HEADER OXIDOREDUCTASE 17-SEP-19 6SUY TITLE YEAST CYTOCHROME C IN COMPLEX WITH AN OCTA-ANIONIC CALIX[4]ARENE COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYTOCHROME C ISO-1; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 GENE: CYC1, YJR048W, J1653; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PROTEIN RECOGNITION, POROUS ASSEMBLY, SUPRAMOLECULAR SCAFFOLDS, KEYWDS 2 MOLECULAR GLUE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR J.M.ALEX,P.B.CROWLEY REVDAT 3 06-NOV-24 6SUY 1 REMARK REVDAT 2 24-JAN-24 6SUY 1 LINK REVDAT 1 15-JAN-20 6SUY 0 JRNL AUTH J.M.ALEX,G.BRANCATELLI,S.VOLPI,C.BONACCORSO,A.CASNATI, JRNL AUTH 2 S.GEREMIA,P.B.CROWLEY JRNL TITL PROBING THE DETERMINANTS OF POROSITY IN PROTEIN FRAMEWORKS: JRNL TITL 2 CO-CRYSTALS OF CYTOCHROME C AND AN OCTA-ANIONIC JRNL TITL 3 CALIX[4]ARENE. JRNL REF ORG.BIOMOL.CHEM. V. 18 211 2020 JRNL REFN ESSN 1477-0539 JRNL PMID 31808772 JRNL DOI 10.1039/C9OB02275A REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.3 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.62 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 44621 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.167 REMARK 3 R VALUE (WORKING SET) : 0.167 REMARK 3 FREE R VALUE : 0.179 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.890 REMARK 3 FREE R VALUE TEST SET COUNT : 2182 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 50 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.76 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.89 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 893 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2107 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 853 REMARK 3 BIN R VALUE (WORKING SET) : 0.2111 REMARK 3 BIN FREE R VALUE : 0.1996 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.48 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 40 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1682 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 241 REMARK 3 SOLVENT ATOMS : 280 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 26.02 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.19 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.23780 REMARK 3 B22 (A**2) : -3.23780 REMARK 3 B33 (A**2) : 6.47550 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.200 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.078 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.073 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.072 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.069 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.957 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 1984 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 2711 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 671 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES : 336 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 1984 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 1 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 215 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 2522 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.09 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.61 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 15.93 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): -51.5771 21.9076 -16.7601 REMARK 3 T TENSOR REMARK 3 T11: 0.0279 T22: -0.0138 REMARK 3 T33: -0.0317 T12: 0.0075 REMARK 3 T13: -0.0059 T23: -0.0001 REMARK 3 L TENSOR REMARK 3 L11: 0.8168 L22: 1.1523 REMARK 3 L33: 1.1959 L12: 0.0720 REMARK 3 L13: -0.0003 L23: 0.2181 REMARK 3 S TENSOR REMARK 3 S11: 0.0129 S12: 0.0093 S13: -0.0616 REMARK 3 S21: -0.0891 S22: 0.0113 S23: -0.0304 REMARK 3 S31: 0.0115 S32: -0.0119 S33: -0.0242 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { B|* } REMARK 3 ORIGIN FOR THE GROUP (A): -76.0537 42.5220 -23.1168 REMARK 3 T TENSOR REMARK 3 T11: -0.0044 T22: 0.0262 REMARK 3 T33: -0.0251 T12: 0.0464 REMARK 3 T13: -0.0041 T23: -0.0129 REMARK 3 L TENSOR REMARK 3 L11: 0.8338 L22: 1.5067 REMARK 3 L33: 0.2123 L12: -0.6874 REMARK 3 L13: 0.1309 L23: -0.1767 REMARK 3 S TENSOR REMARK 3 S11: 0.0421 S12: 0.0031 S13: -0.0373 REMARK 3 S21: -0.0083 S22: -0.0304 S23: 0.0097 REMARK 3 S31: 0.0274 S32: 0.0317 S33: -0.0117 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6SUY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 17-SEP-19. REMARK 100 THE DEPOSITION ID IS D_1292103747. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-FEB-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97624 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44640 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.747 REMARK 200 RESOLUTION RANGE LOW (A) : 56.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 20.30 REMARK 200 R MERGE (I) : 0.14900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.78 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 19.10 REMARK 200 R MERGE FOR SHELL (I) : 1.88800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 5LYC REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 73.09 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.57 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 3.15 M AMMONIUM SULFATE + 0.1 M SODIUM REMARK 280 CITRATE PH 5.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 48.12000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 24.06000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 24.06000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 48.12000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4050 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11830 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -94.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 302 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 359 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A -5 REMARK 465 ALA B -5 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 27 -132.66 -130.37 REMARK 500 ASN A 70 86.26 -159.77 REMARK 500 LYS B 27 -131.61 -128.26 REMARK 500 ASN B 70 87.25 -160.46 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 435 DISTANCE = 6.64 ANGSTROMS REMARK 525 HOH B 444 DISTANCE = 6.10 ANGSTROMS REMARK 525 HOH B 445 DISTANCE = 8.16 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEC A 201 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 18 NE2 REMARK 620 2 HEC A 201 NA 90.1 REMARK 620 3 HEC A 201 NB 87.5 89.0 REMARK 620 4 HEC A 201 NC 90.4 178.0 89.1 REMARK 620 5 HEC A 201 ND 88.5 91.2 176.0 90.7 REMARK 620 6 MET A 80 SD 174.3 85.5 96.0 94.1 88.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 203 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LVT A 202 O1 REMARK 620 2 LVT A 202 O17 132.7 REMARK 620 3 LVT A 202 O19 64.2 155.1 REMARK 620 4 LVT A 202 O21 82.4 78.7 87.3 REMARK 620 5 LVT A 202 O23 154.5 63.5 109.3 122.8 REMARK 620 6 LVT A 202 O24 124.8 89.9 66.2 72.8 66.3 REMARK 620 7 LVT A 202 O33 90.1 122.5 67.9 154.9 65.5 92.6 REMARK 620 8 LVT A 202 O5 81.0 78.5 125.8 129.5 84.6 150.7 72.1 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEC B 201 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 18 NE2 REMARK 620 2 HEC B 201 NA 88.9 REMARK 620 3 HEC B 201 NB 86.7 88.3 REMARK 620 4 HEC B 201 NC 90.8 177.3 89.0 REMARK 620 5 HEC B 201 ND 88.7 91.3 175.4 91.4 REMARK 620 6 MET B 80 SD 174.5 86.2 95.6 94.2 88.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 203 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LVT B 202 O1 REMARK 620 2 LVT B 202 O17 126.7 REMARK 620 3 LVT B 202 O19 74.4 152.8 REMARK 620 4 LVT B 202 O21 82.0 80.2 123.4 REMARK 620 5 LVT B 202 O22 148.6 73.3 80.6 128.3 REMARK 620 6 LVT B 202 O24 114.3 103.2 78.3 66.0 77.9 REMARK 620 7 LVT B 202 O5 79.4 77.4 92.0 133.2 82.8 159.5 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEC A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LVT A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 207 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LVT B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA B 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide HEC B 201 and CYS B REMARK 800 17 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide HEC B 201 and CYS B REMARK 800 14 DBREF 6SUY A -5 103 UNP P00044 CYC1_YEAST 2 109 DBREF 6SUY B -5 103 UNP P00044 CYC1_YEAST 2 109 SEQADV 6SUY ALA A -5 UNP P00044 THR 2 ENGINEERED MUTATION SEQADV 6SUY THR A 102 UNP P00044 CYS 108 ENGINEERED MUTATION SEQADV 6SUY ALA B -5 UNP P00044 THR 2 ENGINEERED MUTATION SEQADV 6SUY THR B 102 UNP P00044 CYS 108 ENGINEERED MUTATION SEQRES 1 A 108 ALA GLU PHE LYS ALA GLY SER ALA LYS LYS GLY ALA THR SEQRES 2 A 108 LEU PHE LYS THR ARG CYS LEU GLN CYS HIS THR VAL GLU SEQRES 3 A 108 LYS GLY GLY PRO HIS LYS VAL GLY PRO ASN LEU HIS GLY SEQRES 4 A 108 ILE PHE GLY ARG HIS SER GLY GLN ALA GLU GLY TYR SER SEQRES 5 A 108 TYR THR ASP ALA ASN ILE LYS LYS ASN VAL LEU TRP ASP SEQRES 6 A 108 GLU ASN ASN MET SER GLU TYR LEU THR ASN PRO LYS LYS SEQRES 7 A 108 TYR ILE PRO GLY THR LYS MET ALA PHE GLY GLY LEU LYS SEQRES 8 A 108 LYS GLU LYS ASP ARG ASN ASP LEU ILE THR TYR LEU LYS SEQRES 9 A 108 LYS ALA THR GLU SEQRES 1 B 108 ALA GLU PHE LYS ALA GLY SER ALA LYS LYS GLY ALA THR SEQRES 2 B 108 LEU PHE LYS THR ARG CYS LEU GLN CYS HIS THR VAL GLU SEQRES 3 B 108 LYS GLY GLY PRO HIS LYS VAL GLY PRO ASN LEU HIS GLY SEQRES 4 B 108 ILE PHE GLY ARG HIS SER GLY GLN ALA GLU GLY TYR SER SEQRES 5 B 108 TYR THR ASP ALA ASN ILE LYS LYS ASN VAL LEU TRP ASP SEQRES 6 B 108 GLU ASN ASN MET SER GLU TYR LEU THR ASN PRO LYS LYS SEQRES 7 B 108 TYR ILE PRO GLY THR LYS MET ALA PHE GLY GLY LEU LYS SEQRES 8 B 108 LYS GLU LYS ASP ARG ASN ASP LEU ILE THR TYR LEU LYS SEQRES 9 B 108 LYS ALA THR GLU HET HEC A 201 43 HET LVT A 202 64 HET NA A 203 1 HET SO4 A 204 5 HET SO4 A 205 5 HET SO4 A 206 5 HET SO4 A 207 5 HET HEC B 201 43 HET LVT B 202 64 HET NA B 203 1 HET SO4 B 204 5 HETNAM HEC HEME C HETNAM LVT OCTA-ANIONIC CALIX[4]ARENE HETNAM NA SODIUM ION HETNAM SO4 SULFATE ION FORMUL 3 HEC 2(C34 H34 FE N4 O4) FORMUL 4 LVT 2(C36 H32 O24 S4) FORMUL 5 NA 2(NA 1+) FORMUL 6 SO4 5(O4 S 2-) FORMUL 14 HOH *280(H2 O) HELIX 1 AA1 SER A 2 CYS A 14 1 13 HELIX 2 AA2 THR A 49 ASN A 56 1 8 HELIX 3 AA3 ASP A 60 ASN A 70 1 11 HELIX 4 AA4 ASN A 70 ILE A 75 1 6 HELIX 5 AA5 LYS A 87 THR A 102 1 16 HELIX 6 AA6 SER B 2 CYS B 14 1 13 HELIX 7 AA7 THR B 49 ASN B 56 1 8 HELIX 8 AA8 ASP B 60 ASN B 70 1 11 HELIX 9 AA9 ASN B 70 ILE B 75 1 6 HELIX 10 AB1 LYS B 87 THR B 102 1 16 LINK SG CYS A 14 CAB HEC A 201 1555 1555 1.83 LINK SG CYS A 17 CAC HEC A 201 1555 1555 1.90 LINK SG CYS B 14 CAB HEC B 201 1555 1555 1.82 LINK SG CYS B 17 CAC HEC B 201 1555 1555 1.88 LINK NE2 HIS A 18 FE HEC A 201 1555 1555 2.05 LINK SD MET A 80 FE HEC A 201 1555 1555 2.32 LINK O1 LVT A 202 NA NA A 203 1555 1555 2.39 LINK O17 LVT A 202 NA NA A 203 1555 1555 2.42 LINK O19 LVT A 202 NA NA A 203 1555 1555 2.79 LINK O21 LVT A 202 NA NA A 203 1555 1555 2.35 LINK O23 LVT A 202 NA NA A 203 1555 1555 2.96 LINK O24 LVT A 202 NA NA A 203 1555 1555 2.34 LINK O33 LVT A 202 NA NA A 203 1555 1555 2.33 LINK O5 LVT A 202 NA NA A 203 1555 1555 2.34 LINK NE2 HIS B 18 FE HEC B 201 1555 1555 2.05 LINK SD MET B 80 FE HEC B 201 1555 1555 2.33 LINK O1 LVT B 202 NA NA B 203 1555 1555 2.30 LINK O17 LVT B 202 NA NA B 203 1555 1555 2.37 LINK O19 LVT B 202 NA NA B 203 1555 1555 2.33 LINK O21 LVT B 202 NA NA B 203 1555 1555 2.48 LINK O22 LVT B 202 NA NA B 203 1555 1555 2.24 LINK O24 LVT B 202 NA NA B 203 1555 1555 2.44 LINK O5 LVT B 202 NA NA B 203 1555 1555 2.49 SITE 1 AC1 22 ARG A 13 CYS A 14 CYS A 17 HIS A 18 SITE 2 AC1 22 VAL A 28 ILE A 35 SER A 40 GLY A 41 SITE 3 AC1 22 TYR A 46 TYR A 48 THR A 49 ASN A 52 SITE 4 AC1 22 TRP A 59 MET A 64 THR A 78 LYS A 79 SITE 5 AC1 22 MET A 80 ALA A 81 PHE A 82 HOH A 303 SITE 6 AC1 22 HOH A 330 LVT B 202 SITE 1 AC2 23 ARG A 13 PHE A 82 GLY A 83 GLY A 84 SITE 2 AC2 23 LEU A 85 LYS A 86 LYS A 87 NA A 203 SITE 3 AC2 23 HOH A 353 HOH A 360 HOH A 370 HOH A 374 SITE 4 AC2 23 HOH A 376 HOH A 378 HOH A 380 ARG B 13 SITE 5 AC2 23 PHE B 82 GLY B 83 GLY B 84 LEU B 85 SITE 6 AC2 23 LYS B 86 LYS B 87 HOH B 365 SITE 1 AC3 1 LVT A 202 SITE 1 AC4 5 ASN A 70 LYS A 86 HOH A 326 HOH A 342 SITE 2 AC4 5 HOH A 366 SITE 1 AC5 5 ARG A 38 HIS A 39 GLN A 42 HOH A 348 SITE 2 AC5 5 HOH A 352 SITE 1 AC6 5 THR A 8 LYS A 11 HOH A 321 THR B 8 SITE 2 AC6 5 LYS B 11 SITE 1 AC7 4 SER A 2 ALA A 3 LYS A 4 HOH A 322 SITE 1 AC8 24 GLU A -4 GLN A 16 VAL A 28 ASP A 60 SITE 2 AC8 24 ASN A 62 ASN A 63 GLU A 66 TYR A 74 SITE 3 AC8 24 HEC A 201 HOH A 331 LYS B 87 GLU B 88 SITE 4 AC8 24 LYS B 89 NA B 203 HOH B 318 HOH B 322 SITE 5 AC8 24 HOH B 329 HOH B 330 HOH B 333 HOH B 339 SITE 6 AC8 24 HOH B 343 HOH B 380 HOH B 392 HOH B 394 SITE 1 AC9 1 LVT B 202 SITE 1 AD1 4 THR B 69 ASN B 70 LYS B 86 HOH B 328 SITE 1 AD2 25 ARG B 13 CYS B 14 LEU B 15 GLN B 16 SITE 2 AD2 25 HIS B 18 LYS B 27 VAL B 28 GLY B 29 SITE 3 AD2 25 ILE B 35 SER B 40 GLY B 41 TYR B 46 SITE 4 AD2 25 TYR B 48 THR B 49 ASN B 52 TRP B 59 SITE 5 AD2 25 MET B 64 TYR B 67 THR B 78 LYS B 79 SITE 6 AD2 25 MET B 80 PHE B 82 LEU B 94 HOH B 334 SITE 7 AD2 25 HOH B 357 SITE 1 AD3 24 PHE B 10 ARG B 13 LEU B 15 GLN B 16 SITE 2 AD3 24 CYS B 17 HIS B 18 VAL B 28 ILE B 35 SITE 3 AD3 24 SER B 40 GLY B 41 TYR B 46 TYR B 48 SITE 4 AD3 24 THR B 49 ASN B 52 TRP B 59 MET B 64 SITE 5 AD3 24 TYR B 67 THR B 78 LYS B 79 MET B 80 SITE 6 AD3 24 PHE B 82 LEU B 94 HOH B 334 HOH B 357 CRYST1 102.489 102.489 72.180 90.00 90.00 120.00 P 32 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009757 0.005633 0.000000 0.00000 SCALE2 0.000000 0.011267 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013854 0.00000