HEADER PROTEIN BINDING 17-SEP-19 6SUZ TITLE HUMAN PRION PROTEIN (PRP) FRAGMENT 119-231 (G127V V129 VARIANT) TITLE 2 COMPLEXED TO ICSM 18 (ANTI-PRP THERAPEUTIC ANTIBODY) FAB FRAGMENT COMPND MOL_ID: 1; COMPND 2 MOLECULE: MAJOR PRION PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PRP,ASCR,PRP27-30,PRP33-35C; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: ICSM 18-ANTI-PRP THERAPEUTIC FAB HEAVY CHAIN; COMPND 8 CHAIN: H; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: ICSM 18-ANTI-PRP THERAPEUTIC FAB LIGHT CHAIN; COMPND 11 CHAIN: L SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PRNP, ALTPRP, PRIP, PRP; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 10 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 11 ORGANISM_TAXID: 10090; SOURCE 12 MOL_ID: 3; SOURCE 13 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 14 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 15 ORGANISM_TAXID: 10090 KEYWDS PRION, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR R.CONNERS REVDAT 2 24-JAN-24 6SUZ 1 REMARK REVDAT 1 12-AUG-20 6SUZ 0 JRNL AUTH L.L.P.HOSSZU,R.CONNERS,D.SANGAR,M.BATCHELOR,E.B.SAWYER, JRNL AUTH 2 S.FISHER,M.J.CLIFF,A.M.HOUNSLOW,K.MCAULEY,R.LEO BRADY, JRNL AUTH 3 G.S.JACKSON,J.BIESCHKE,J.P.WALTHO,J.COLLINGE JRNL TITL STRUCTURAL EFFECTS OF THE HIGHLY PROTECTIVE V127 JRNL TITL 2 POLYMORPHISM ON HUMAN PRION PROTEIN. JRNL REF COMMUN BIOL V. 3 402 2020 JRNL REFN ESSN 2399-3642 JRNL PMID 32728168 JRNL DOI 10.1038/S42003-020-01126-6 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 111.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 21923 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.163 REMARK 3 R VALUE (WORKING SET) : 0.161 REMARK 3 FREE R VALUE : 0.212 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1161 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.57 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1599 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.65 REMARK 3 BIN R VALUE (WORKING SET) : 0.2670 REMARK 3 BIN FREE R VALUE SET COUNT : 88 REMARK 3 BIN FREE R VALUE : 0.3440 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4078 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 5 REMARK 3 SOLVENT ATOMS : 66 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 57.01 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.35000 REMARK 3 B22 (A**2) : -0.35000 REMARK 3 B33 (A**2) : 1.14000 REMARK 3 B12 (A**2) : -0.18000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.365 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.236 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.181 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 17.163 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.965 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.946 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4210 ; 0.018 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 3776 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5742 ; 1.882 ; 1.938 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8747 ; 0.922 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 529 ; 7.765 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 179 ;37.025 ;24.413 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 673 ;18.059 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;19.432 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 636 ; 0.099 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4796 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 968 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 125 A 223 REMARK 3 ORIGIN FOR THE GROUP (A): -39.3679 -38.8276 23.8159 REMARK 3 T TENSOR REMARK 3 T11: 0.0825 T22: 0.1075 REMARK 3 T33: 0.0715 T12: -0.0227 REMARK 3 T13: -0.0135 T23: -0.0295 REMARK 3 L TENSOR REMARK 3 L11: 0.6327 L22: 7.2787 REMARK 3 L33: 1.1881 L12: 2.1202 REMARK 3 L13: -0.4173 L23: -1.5947 REMARK 3 S TENSOR REMARK 3 S11: -0.1035 S12: 0.0381 S13: 0.0731 REMARK 3 S21: -0.4139 S22: 0.1009 S23: 0.2967 REMARK 3 S31: 0.1831 S32: -0.2400 S33: 0.0026 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : H 1 H 215 REMARK 3 ORIGIN FOR THE GROUP (A): -42.5768 7.0013 16.5632 REMARK 3 T TENSOR REMARK 3 T11: 0.1755 T22: 0.1687 REMARK 3 T33: 0.2102 T12: 0.0239 REMARK 3 T13: -0.0960 T23: -0.0152 REMARK 3 L TENSOR REMARK 3 L11: 1.0687 L22: 5.1066 REMARK 3 L33: 3.2762 L12: 0.3477 REMARK 3 L13: -0.7034 L23: -1.9249 REMARK 3 S TENSOR REMARK 3 S11: 0.0306 S12: 0.1901 S13: 0.3475 REMARK 3 S21: -0.3386 S22: -0.0457 S23: 0.3723 REMARK 3 S31: -0.4815 S32: -0.1166 S33: 0.0151 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : L 1 L 211 REMARK 3 ORIGIN FOR THE GROUP (A): -25.1872 12.4526 15.1387 REMARK 3 T TENSOR REMARK 3 T11: 0.3151 T22: 0.2078 REMARK 3 T33: 0.2586 T12: -0.0852 REMARK 3 T13: -0.0944 T23: 0.0383 REMARK 3 L TENSOR REMARK 3 L11: 0.9750 L22: 2.9974 REMARK 3 L33: 1.7281 L12: -0.4297 REMARK 3 L13: 0.0220 L23: -0.5700 REMARK 3 S TENSOR REMARK 3 S11: -0.0385 S12: -0.1055 S13: 0.4571 REMARK 3 S21: -0.1308 S22: -0.1619 S23: -0.2784 REMARK 3 S31: -0.6733 S32: 0.2430 S33: 0.2004 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : WITH TLS ADDED HYDROGENS REMARK 3 HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 4 REMARK 4 6SUZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 17-SEP-19. REMARK 100 THE DEPOSITION ID IS D_1292104264. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-JAN-14 REMARK 200 TEMPERATURE (KELVIN) : 300 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9762 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.2.17 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23111 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 111.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 5.900 REMARK 200 R MERGE (I) : 0.14200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.60 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 5.90 REMARK 200 R MERGE FOR SHELL (I) : 1.05900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2W9E REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.47 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.76 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 5 - 6 MG/ML PRP IN 0.4 M AND 0.75 M REMARK 280 AMMONIUM SULPHATE, 0.05 M TRIS (PH 7.5 AND 8.0) WERE REMARK 280 EQUILIBRATED OVER WELLS CONTAINING 0.8 M AND 1.5 M AMMONIUM REMARK 280 SULPHATE, 0.1 M TRIS (PH 7.5 AND 8.0)., VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 300K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z REMARK 290 10555 -Y,-X,-Z+1/2 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 67.89850 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 67.89850 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 67.89850 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 67.89850 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 67.89850 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 67.89850 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4970 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23980 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -35.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, H, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH L 314 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE1 GLN L 1 OG SER L 92 12555 2.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 164 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG A 164 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR H 30 -93.94 -78.86 REMARK 500 HIS H 41 51.54 32.14 REMARK 500 LYS H 43 -79.95 -130.44 REMARK 500 PRO H 53 23.76 -67.97 REMARK 500 ASN H 54 72.11 174.91 REMARK 500 TYR H 101 -121.64 43.04 REMARK 500 ALA H 132 88.04 -62.31 REMARK 500 ALA H 133 75.81 -110.41 REMARK 500 GLN H 134 135.37 56.76 REMARK 500 ASN H 136 -110.30 76.41 REMARK 500 ASN H 157 11.83 45.88 REMARK 500 SER H 158 11.41 104.22 REMARK 500 SER H 162 22.44 -143.84 REMARK 500 THR L 50 -49.26 75.28 REMARK 500 ALA L 83 -176.22 -174.69 REMARK 500 LYS L 168 -80.33 -79.26 REMARK 500 ARG L 210 6.43 -65.40 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASN H 55 GLY H 56 147.19 REMARK 500 GLN H 134 THR H 135 142.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 301 DBREF 6SUZ A 125 223 UNP P04156 PRIO_HUMAN 125 223 DBREF 6SUZ H 1 215 PDB 6SUZ 6SUZ 1 215 DBREF 6SUZ L 1 211 PDB 6SUZ 6SUZ 1 211 SEQADV 6SUZ VAL A 127 UNP P04156 GLY 127 ENGINEERED MUTATION SEQADV 6SUZ VAL A 129 UNP P04156 MET 129 ENGINEERED MUTATION SEQRES 1 A 99 LEU GLY VAL TYR VAL LEU GLY SER ALA MET SER ARG PRO SEQRES 2 A 99 ILE ILE HIS PHE GLY SER ASP TYR GLU ASP ARG TYR TYR SEQRES 3 A 99 ARG GLU ASN MET HIS ARG TYR PRO ASN GLN VAL TYR TYR SEQRES 4 A 99 ARG PRO MET ASP GLU TYR SER ASN GLN ASN ASN PHE VAL SEQRES 5 A 99 HIS ASP CYS VAL ASN ILE THR ILE LYS GLN HIS THR VAL SEQRES 6 A 99 THR THR THR THR LYS GLY GLU ASN PHE THR GLU THR ASP SEQRES 7 A 99 VAL LYS MET MET GLU ARG VAL VAL GLU GLN MET CYS ILE SEQRES 8 A 99 THR GLN TYR GLU ARG GLU SER GLN SEQRES 1 H 215 GLU VAL GLN LEU GLN GLN SER GLY PRO GLU LEU VAL LYS SEQRES 2 H 215 PRO GLY SER SER VAL LYS ILE SER CYS LYS ALA SER ARG SEQRES 3 H 215 ASN THR PHE THR ASP TYR ASN LEU ASP TRP VAL LYS GLN SEQRES 4 H 215 SER HIS GLY LYS THR LEU GLU TRP ILE GLY ASN VAL TYR SEQRES 5 H 215 PRO ASN ASN GLY VAL THR GLY TYR ASN GLN LYS PHE ARG SEQRES 6 H 215 GLY LYS ALA THR LEU THR VAL ASP LYS SER SER SER THR SEQRES 7 H 215 ALA TYR MET GLU LEU HIS SER LEU THR SER GLU ASP SER SEQRES 8 H 215 ALA VAL TYR TYR CYS ALA LEU TYR TYR TYR ASP VAL SER SEQRES 9 H 215 TYR TRP GLY GLN GLY THR LEU VAL THR VAL SER SER ALA SEQRES 10 H 215 LYS THR THR PRO PRO SER VAL TYR PRO LEU ALA PRO GLY SEQRES 11 H 215 SER ALA ALA GLN THR ASN SER VAL THR LEU GLY CYS LEU SEQRES 12 H 215 VAL LYS GLY TYR PHE PRO GLU PRO VAL THR VAL THR TRP SEQRES 13 H 215 ASN SER GLY SER LEU SER SER GLY VAL HIS THR PHE PRO SEQRES 14 H 215 ALA VAL LEU GLN SER ASP LEU TYR THR LEU SER SER SER SEQRES 15 H 215 VAL THR VAL PRO SER SER THR TRP PRO SER GLN SER VAL SEQRES 16 H 215 THR CYS ASN VAL ALA HIS PRO ALA SER SER THR ALA VAL SEQRES 17 H 215 ASP LYS LYS ILE ALA PRO ALA SEQRES 1 L 211 GLN ILE VAL LEU THR GLN SER PRO ALA ILE MET SER ALA SEQRES 2 L 211 SER PRO GLY GLU LYS VAL THR MET THR CYS SER ALA SER SEQRES 3 L 211 SER SER VAL SER TYR MET HIS TRP TYR GLN GLN LYS SER SEQRES 4 L 211 GLY THR SER PRO LYS ARG TRP ILE TYR ASP THR SER LYS SEQRES 5 L 211 LEU ALA SER GLY VAL PRO ALA ARG PHE SER GLY SER GLY SEQRES 6 L 211 SER GLY THR SER TYR SER LEU THR ILE SER SER MET GLU SEQRES 7 L 211 ALA GLU ASP ALA ALA THR TYR PHE CYS HIS GLN TRP ARG SEQRES 8 L 211 SER ASN PRO TYR THR PHE GLY GLY GLY THR LYS LEU GLU SEQRES 9 L 211 ILE LYS ARG ALA ASP ALA ALA PRO THR VAL SER ILE PHE SEQRES 10 L 211 PRO PRO SER SER GLU GLN LEU THR GLY GLY GLY ALA SER SEQRES 11 L 211 VAL VAL CYS PHE LEU ASN ASN PHE TYR PRO LYS ASP ILE SEQRES 12 L 211 ASN VAL LYS TRP LYS ILE ASP GLY SER GLU ARG GLN ASN SEQRES 13 L 211 GLY VAL LEU ASN SER TRP THR ASP GLN ASP SER LYS ASP SEQRES 14 L 211 SER THR TYR SER MET SER SER THR LEU THR LEU THR LYS SEQRES 15 L 211 ASP GLU TYR GLU ARG HIS ASN SER TYR THR CYS GLU ALA SEQRES 16 L 211 THR HIS LYS THR SER THR SER PRO ILE VAL LYS SER PHE SEQRES 17 L 211 ASN ARG ASN HET SO4 A 301 5 HETNAM SO4 SULFATE ION FORMUL 4 SO4 O4 S 2- FORMUL 5 HOH *66(H2 O) HELIX 1 AA1 SER A 143 MET A 154 1 12 HELIX 2 AA2 HIS A 155 TYR A 157 5 3 HELIX 3 AA3 PRO A 165 TYR A 169 5 5 HELIX 4 AA4 ASN A 171 THR A 193 1 23 HELIX 5 AA5 THR A 199 SER A 222 1 24 HELIX 6 AA6 GLN H 62 ARG H 65 5 4 HELIX 7 AA7 LYS H 74 SER H 76 5 3 HELIX 8 AA8 THR H 87 SER H 91 5 5 HELIX 9 AA9 SER H 188 TRP H 190 5 3 HELIX 10 AB1 PRO H 202 SER H 205 5 4 HELIX 11 AB2 GLU L 78 ALA L 82 5 5 HELIX 12 AB3 SER L 120 THR L 125 1 6 HELIX 13 AB4 LYS L 182 ARG L 187 1 6 SHEET 1 AA1 2 VAL A 129 LEU A 130 0 SHEET 2 AA1 2 TYR A 162 TYR A 163 -1 O TYR A 163 N VAL A 129 SHEET 1 AA2 4 LEU H 4 GLN H 6 0 SHEET 2 AA2 4 VAL H 18 ALA H 24 -1 O LYS H 23 N GLN H 5 SHEET 3 AA2 4 THR H 78 LEU H 83 -1 O ALA H 79 N CYS H 22 SHEET 4 AA2 4 ALA H 68 ASP H 73 -1 N ASP H 73 O THR H 78 SHEET 1 AA3 6 GLU H 10 VAL H 12 0 SHEET 2 AA3 6 THR H 110 VAL H 114 1 O THR H 113 N GLU H 10 SHEET 3 AA3 6 ALA H 92 TYR H 100 -1 N ALA H 92 O VAL H 112 SHEET 4 AA3 6 ASN H 33 SER H 40 -1 N VAL H 37 O TYR H 95 SHEET 5 AA3 6 THR H 44 VAL H 51 -1 O GLU H 46 N LYS H 38 SHEET 6 AA3 6 THR H 58 TYR H 60 -1 O GLY H 59 N ASN H 50 SHEET 1 AA4 4 GLU H 10 VAL H 12 0 SHEET 2 AA4 4 THR H 110 VAL H 114 1 O THR H 113 N GLU H 10 SHEET 3 AA4 4 ALA H 92 TYR H 100 -1 N ALA H 92 O VAL H 112 SHEET 4 AA4 4 VAL H 103 TRP H 106 -1 O TYR H 105 N LEU H 98 SHEET 1 AA5 4 SER H 123 LEU H 127 0 SHEET 2 AA5 4 SER H 137 TYR H 147 -1 O LEU H 143 N TYR H 125 SHEET 3 AA5 4 LEU H 176 PRO H 186 -1 O LEU H 179 N VAL H 144 SHEET 4 AA5 4 VAL H 165 THR H 167 -1 N HIS H 166 O SER H 182 SHEET 1 AA6 4 SER H 123 LEU H 127 0 SHEET 2 AA6 4 SER H 137 TYR H 147 -1 O LEU H 143 N TYR H 125 SHEET 3 AA6 4 LEU H 176 PRO H 186 -1 O LEU H 179 N VAL H 144 SHEET 4 AA6 4 VAL H 171 GLN H 173 -1 N GLN H 173 O LEU H 176 SHEET 1 AA7 3 THR H 153 TRP H 156 0 SHEET 2 AA7 3 VAL H 195 ALA H 200 -1 O ASN H 198 N THR H 155 SHEET 3 AA7 3 ALA H 207 ILE H 212 -1 O VAL H 208 N VAL H 199 SHEET 1 AA8 4 LEU L 4 SER L 7 0 SHEET 2 AA8 4 VAL L 19 ALA L 25 -1 O SER L 24 N THR L 5 SHEET 3 AA8 4 SER L 69 ILE L 74 -1 O TYR L 70 N CYS L 23 SHEET 4 AA8 4 PHE L 61 SER L 66 -1 N SER L 62 O THR L 73 SHEET 1 AA9 6 ILE L 10 ALA L 13 0 SHEET 2 AA9 6 THR L 101 ILE L 105 1 O GLU L 104 N MET L 11 SHEET 3 AA9 6 ALA L 83 GLN L 89 -1 N ALA L 83 O LEU L 103 SHEET 4 AA9 6 HIS L 33 GLN L 37 -1 N TYR L 35 O PHE L 86 SHEET 5 AA9 6 LYS L 44 TYR L 48 -1 O ILE L 47 N TRP L 34 SHEET 6 AA9 6 LYS L 52 LEU L 53 -1 O LYS L 52 N TYR L 48 SHEET 1 AB1 4 ILE L 10 ALA L 13 0 SHEET 2 AB1 4 THR L 101 ILE L 105 1 O GLU L 104 N MET L 11 SHEET 3 AB1 4 ALA L 83 GLN L 89 -1 N ALA L 83 O LEU L 103 SHEET 4 AB1 4 THR L 96 PHE L 97 -1 O THR L 96 N GLN L 89 SHEET 1 AB2 4 THR L 113 PHE L 117 0 SHEET 2 AB2 4 GLY L 128 PHE L 138 -1 O VAL L 132 N PHE L 117 SHEET 3 AB2 4 TYR L 172 THR L 181 -1 O MET L 174 N LEU L 135 SHEET 4 AB2 4 VAL L 158 TRP L 162 -1 N LEU L 159 O THR L 177 SHEET 1 AB3 4 SER L 152 ARG L 154 0 SHEET 2 AB3 4 ILE L 143 ILE L 149 -1 N ILE L 149 O SER L 152 SHEET 3 AB3 4 SER L 190 HIS L 197 -1 O THR L 192 N LYS L 148 SHEET 4 AB3 4 SER L 200 ASN L 209 -1 O ILE L 204 N ALA L 195 SSBOND 1 CYS A 179 CYS A 214 1555 1555 2.05 SSBOND 2 CYS H 22 CYS H 96 1555 1555 2.04 SSBOND 3 CYS H 142 CYS H 197 1555 1555 2.05 SSBOND 4 CYS L 23 CYS L 87 1555 1555 2.04 SSBOND 5 CYS L 133 CYS L 193 1555 1555 2.05 CISPEP 1 ASN H 54 ASN H 55 0 2.64 CISPEP 2 PHE H 148 PRO H 149 0 8.85 CISPEP 3 GLU H 150 PRO H 151 0 -3.94 CISPEP 4 TRP H 190 PRO H 191 0 6.64 CISPEP 5 SER L 7 PRO L 8 0 -3.19 CISPEP 6 ASN L 93 PRO L 94 0 3.05 CISPEP 7 TYR L 139 PRO L 140 0 5.89 SITE 1 AC1 5 SER A 135 ARG A 136 ASN A 159 TYR H 60 SITE 2 AC1 5 ARG H 65 CRYST1 127.951 127.951 135.797 90.00 90.00 120.00 P 63 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007815 0.004512 0.000000 0.00000 SCALE2 0.000000 0.009025 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007364 0.00000