HEADER RNA 18-SEP-19 6SVS TITLE CRYSTAL STRUCTURE OF U:A-U-RICH RNA TRIPLE HELIX WITH 11 CONSECUTIVE TITLE 2 BASE TRIPLES COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA (79-MER); COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 4 ORGANISM_TAXID: 9606 KEYWDS RNA TRIPLE HELIX POLY(U:A-U) BASE TRIPLE, RNA EXPDTA X-RAY DIFFRACTION AUTHOR A.RUSZKOWSKA,M.RUSZKOWSKI,J.P.HULEWICZ,Z.DAUTER,J.A.BROWN REVDAT 5 24-JAN-24 6SVS 1 REMARK REVDAT 4 30-MAR-22 6SVS 1 LINK REVDAT 3 08-APR-20 6SVS 1 JRNL REVDAT 2 29-JAN-20 6SVS 1 JRNL REVDAT 1 01-JAN-20 6SVS 0 JRNL AUTH A.RUSZKOWSKA,M.RUSZKOWSKI,J.P.HULEWICZ,Z.DAUTER,J.A.BROWN JRNL TITL MOLECULAR STRUCTURE OF A U•A-U-RICH RNA TRIPLE HELIX JRNL TITL 2 WITH 11 CONSECUTIVE BASE TRIPLES. JRNL REF NUCLEIC ACIDS RES. V. 48 3304 2020 JRNL REFN ESSN 1362-4962 JRNL PMID 31930330 JRNL DOI 10.1093/NAR/GKZ1222 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.15.2_3472 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.70 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 54.3 REMARK 3 NUMBER OF REFLECTIONS : 13011 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.169 REMARK 3 R VALUE (WORKING SET) : 0.167 REMARK 3 FREE R VALUE : 0.213 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.870 REMARK 3 FREE R VALUE TEST SET COUNT : 633 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 40.7000 - 4.2695 0.98 4542 228 0.1472 0.2008 REMARK 3 2 4.2695 - 3.3894 0.82 3711 197 0.1752 0.2102 REMARK 3 3 3.3894 - 2.9611 0.52 2399 121 0.1858 0.2337 REMARK 3 4 2.9611 - 2.6904 0.26 1177 56 0.3087 0.3433 REMARK 3 5 2.6904 - 2.5000 0.12 549 31 0.4353 0.4680 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.360 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 91.96 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 2 THROUGH 21 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.1200 32.7079 11.0830 REMARK 3 T TENSOR REMARK 3 T11: 0.4260 T22: 0.8149 REMARK 3 T33: 0.6336 T12: -0.2280 REMARK 3 T13: 0.0432 T23: -0.1747 REMARK 3 L TENSOR REMARK 3 L11: 0.8497 L22: 1.9361 REMARK 3 L33: 0.6564 L12: 0.7639 REMARK 3 L13: -0.6231 L23: -1.0493 REMARK 3 S TENSOR REMARK 3 S11: -0.0557 S12: -0.2274 S13: 0.2256 REMARK 3 S21: -0.2917 S22: -0.1083 S23: 0.5670 REMARK 3 S31: 0.4050 S32: -0.5525 S33: 0.0869 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 22 THROUGH 46 ) REMARK 3 ORIGIN FOR THE GROUP (A): -25.0501 25.8934 21.2077 REMARK 3 T TENSOR REMARK 3 T11: 0.3052 T22: 1.2971 REMARK 3 T33: 0.7676 T12: -0.2565 REMARK 3 T13: 0.0226 T23: 0.0717 REMARK 3 L TENSOR REMARK 3 L11: 4.1203 L22: 0.8603 REMARK 3 L33: 0.0088 L12: 1.8409 REMARK 3 L13: 0.0467 L23: 0.0475 REMARK 3 S TENSOR REMARK 3 S11: 0.0734 S12: -0.9879 S13: -0.6968 REMARK 3 S21: 0.1357 S22: 0.2032 S23: -0.3469 REMARK 3 S31: 0.2687 S32: -0.3638 S33: -0.1654 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 47 THROUGH 78 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.1055 40.1422 4.4485 REMARK 3 T TENSOR REMARK 3 T11: 0.3679 T22: 0.5820 REMARK 3 T33: 0.4526 T12: -0.0732 REMARK 3 T13: 0.0707 T23: -0.1199 REMARK 3 L TENSOR REMARK 3 L11: 3.9299 L22: 3.3204 REMARK 3 L33: 1.7629 L12: 1.4057 REMARK 3 L13: -1.8734 L23: -1.2973 REMARK 3 S TENSOR REMARK 3 S11: 0.0309 S12: 0.1440 S13: 0.3552 REMARK 3 S21: -0.7892 S22: -0.3509 S23: 0.2156 REMARK 3 S31: -0.0014 S32: -0.7405 S33: 0.0213 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 2 THROUGH 21 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.2414 0.8971 22.4421 REMARK 3 T TENSOR REMARK 3 T11: 0.9496 T22: 1.3447 REMARK 3 T33: 0.8473 T12: 0.0565 REMARK 3 T13: 0.4062 T23: 0.0642 REMARK 3 L TENSOR REMARK 3 L11: 4.2141 L22: 1.7143 REMARK 3 L33: 6.3867 L12: -2.1372 REMARK 3 L13: -5.1763 L23: 2.6505 REMARK 3 S TENSOR REMARK 3 S11: 0.3432 S12: -0.4006 S13: 0.9110 REMARK 3 S21: 0.1427 S22: 0.3201 S23: 0.3107 REMARK 3 S31: -0.4157 S32: -1.0776 S33: -0.5825 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 22 THROUGH 36 ) REMARK 3 ORIGIN FOR THE GROUP (A): -23.2358 4.7903 46.3654 REMARK 3 T TENSOR REMARK 3 T11: 0.7120 T22: 1.7574 REMARK 3 T33: 0.9439 T12: 0.5341 REMARK 3 T13: 0.4485 T23: 0.6959 REMARK 3 L TENSOR REMARK 3 L11: 0.0678 L22: 0.0501 REMARK 3 L33: 0.5017 L12: -0.0603 REMARK 3 L13: -0.1855 L23: 0.1581 REMARK 3 S TENSOR REMARK 3 S11: 0.5605 S12: 1.3371 S13: 1.4072 REMARK 3 S21: -0.5701 S22: -0.2140 S23: -0.2495 REMARK 3 S31: -0.6886 S32: -0.6022 S33: -0.8491 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 37 THROUGH 78 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.5670 -3.1969 19.4441 REMARK 3 T TENSOR REMARK 3 T11: 0.9175 T22: 0.9140 REMARK 3 T33: 0.7116 T12: 0.0322 REMARK 3 T13: 0.3595 T23: 0.1432 REMARK 3 L TENSOR REMARK 3 L11: 3.9675 L22: 2.5043 REMARK 3 L33: 3.5432 L12: -1.2968 REMARK 3 L13: -2.2374 L23: 1.0163 REMARK 3 S TENSOR REMARK 3 S11: 0.1581 S12: -0.4759 S13: 0.4340 REMARK 3 S21: 0.2360 S22: 0.2176 S23: 0.2705 REMARK 3 S31: -0.1056 S32: -0.9023 S33: -0.2672 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6SVS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 18-SEP-19. REMARK 100 THE DEPOSITION ID IS D_1292103965. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-OCT-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : STARANISO REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13040 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 40.700 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 54.4 REMARK 200 DATA REDUNDANCY : 3.900 REMARK 200 R MERGE (I) : 0.03900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.70 REMARK 200 COMPLETENESS FOR SHELL (%) : 13.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.47000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4PLX REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.28 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.44 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: THE CRYSTALLIZATION DROP INCLUDED 1.5 REMARK 280 UL OF MALAT1_TH11 RNA AND 1 UL RESERVOIR SOLUTION CONTAINING 50 REMARK 280 MM SODIUM CACODYLATE PH 6.0-6.3, 200 MM CALCIUM ACETATE, AND 2.5 REMARK 280 M SODIUM CHLORIDE. CRYSTALS WERE CRYOPROTECTED BY STEPWISE REMARK 280 ADDITION OF CRYSTALLIZATION SOLUTION SUPPLEMENTED WITH GLYCEROL REMARK 280 UNTIL THE FINAL CONCENTRATION OF 20% GLYCEROL WAS REACHED., REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 39.05700 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 102 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G A 2 OP2 REMARK 620 2 GTP A 106 O1A 76.1 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 105 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G A 52 OP1 REMARK 620 2 GTP A 106 O2A 116.7 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 103 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 U A 57 OP1 REMARK 620 2 U A 59 OP1 77.8 REMARK 620 3 U A 60 OP2 140.7 71.2 REMARK 620 4 A A 62 OP2 127.2 153.1 88.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 104 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 A A 63 OP1 REMARK 620 2 A A 64 OP2 79.4 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 102 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G B 2 OP2 REMARK 620 2 GTP B 106 O1A 111.6 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 105 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G B 52 OP1 REMARK 620 2 GTP B 106 O2A 117.6 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 103 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 U B 57 OP1 REMARK 620 2 U B 59 OP1 95.7 REMARK 620 3 U B 60 OP2 174.1 78.4 REMARK 620 4 A B 62 OP2 78.0 172.6 107.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 104 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 A B 63 OP1 REMARK 620 2 A B 64 OP2 82.5 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 104 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 105 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GTP A 106 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue A23 A 107 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA B 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA B 103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA B 104 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA B 105 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-nucleotide GTP B 106 and G B REMARK 800 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-nucleotide A23 B 107 and A B REMARK 800 78 DBREF 6SVS A 2 78 PDB 6SVS 6SVS 2 78 DBREF 6SVS B 2 78 PDB 6SVS 6SVS 2 78 SEQRES 1 A 77 G A A G G U U U U U C U U SEQRES 2 A 77 U U U C C U G A A G G C G SEQRES 3 A 77 A A A G U C U U C A G G U SEQRES 4 A 77 U U U U C U U U U U G G C SEQRES 5 A 77 C U U U C U U A A A A A A SEQRES 6 A 77 A A A A A A A G A A A A SEQRES 1 B 77 G A A G G U U U U U C U U SEQRES 2 B 77 U U U C C U G A A G G C G SEQRES 3 B 77 A A A G U C U U C A G G U SEQRES 4 B 77 U U U U C U U U U U G G C SEQRES 5 B 77 C U U U C U U A A A A A A SEQRES 6 B 77 A A A A A A A G A A A A HET GOL A 101 6 HET CA A 102 1 HET CA A 103 1 HET CA A 104 1 HET CA A 105 1 HET GTP A 106 32 HET A23 A 107 25 HET GOL B 101 6 HET CA B 102 1 HET CA B 103 1 HET CA B 104 1 HET CA B 105 1 HET GTP B 106 32 HET A23 B 107 25 HETNAM GOL GLYCEROL HETNAM CA CALCIUM ION HETNAM GTP GUANOSINE-5'-TRIPHOSPHATE HETNAM A23 ADENOSINE-5'-PHOSPHATE-2',3'-CYCLIC PHOSPHATE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GOL 2(C3 H8 O3) FORMUL 4 CA 8(CA 2+) FORMUL 8 GTP 2(C10 H16 N5 O14 P3) FORMUL 9 A23 2(C10 H13 N5 O9 P2) FORMUL 17 HOH *5(H2 O) LINK P G A 2 O3' GTP A 106 1555 1555 1.60 LINK O3' A A 78 P A23 A 107 1555 1555 1.58 LINK P G B 2 O3' GTP B 106 1555 1555 1.61 LINK O3' A B 78 P A23 B 107 1555 1555 1.60 LINK OP2 G A 2 CA CA A 102 1555 1555 2.38 LINK OP1 G A 52 CA CA A 105 1555 1555 2.39 LINK OP1 U A 57 CA CA A 103 1555 1555 2.36 LINK OP1 U A 59 CA CA A 103 1555 1555 2.38 LINK OP2 U A 60 CA CA A 103 1555 1555 2.38 LINK OP2 A A 62 CA CA A 103 1555 1555 2.37 LINK OP1 A A 63 CA CA A 104 1555 1555 2.39 LINK OP2 A A 64 CA CA A 104 1555 1555 2.38 LINK CA CA A 102 O1A GTP A 106 1555 1555 2.41 LINK CA CA A 105 O2A GTP A 106 1555 1555 2.39 LINK OP2 G B 2 CA CA B 102 1555 1555 2.37 LINK OP1 G B 52 CA CA B 105 1555 1555 2.39 LINK OP1 U B 57 CA CA B 103 1555 1555 2.37 LINK OP1 U B 59 CA CA B 103 1555 1555 2.38 LINK OP2 U B 60 CA CA B 103 1555 1555 2.36 LINK OP2 A B 62 CA CA B 103 1555 1555 2.35 LINK OP1 A B 63 CA CA B 104 1555 1555 2.38 LINK OP2 A B 64 CA CA B 104 1555 1555 2.38 LINK CA CA B 102 O1A GTP B 106 1555 1555 2.40 LINK CA CA B 105 O2A GTP B 106 1555 1555 2.38 SITE 1 AC1 5 G A 5 G A 6 U A 7 U A 49 SITE 2 AC1 5 U A 50 SITE 1 AC2 3 G A 2 CA A 105 GTP A 106 SITE 1 AC3 4 U A 57 U A 59 U A 60 A A 62 SITE 1 AC4 2 A A 63 A A 64 SITE 1 AC5 3 G A 52 CA A 102 GTP A 106 SITE 1 AC6 6 G A 2 U A 57 C A 58 CA A 102 SITE 2 AC6 6 CA A 105 HOH A 201 SITE 1 AC7 6 U A 17 C A 18 G A 39 U A 40 SITE 2 AC7 6 U A 41 A A 78 SITE 1 AC8 1 G B 6 SITE 1 AC9 3 G B 2 CA B 105 GTP B 106 SITE 1 AD1 4 U B 57 U B 59 U B 60 A B 62 SITE 1 AD2 2 A B 63 A B 64 SITE 1 AD3 3 G B 52 CA B 102 GTP B 106 SITE 1 AD4 5 A B 3 U B 57 C B 58 CA B 102 SITE 2 AD4 5 CA B 105 SITE 1 AD5 8 U B 16 U B 17 C B 18 G B 39 SITE 2 AD5 8 U B 40 U B 41 U B 42 A B 77 CRYST1 54.716 78.114 84.018 90.00 104.20 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018276 0.000000 0.004626 0.00000 SCALE2 0.000000 0.012802 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012278 0.00000