HEADER ANTIBIOTIC 19-SEP-19 6SW1 TITLE CRYSTAL STRUCTURE OF P. AERUGINOSA PQSL: R41Y, I43R, G45R, C105G TITLE 2 MUTANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROBABLE FAD-DEPENDENT MONOOXYGENASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA (STRAIN ATCC 15692 / DSM SOURCE 3 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1); SOURCE 4 ORGANISM_TAXID: 208964; SOURCE 5 STRAIN: ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 SOURCE 6 / 1C / PRS 101 / PAO1; SOURCE 7 GENE: PQSL, PA4190; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 10 EXPRESSION_SYSTEM_STRAIN: LMG194 KEYWDS OXIDOREDUCTASE, PHOTOCATALYSIS, FAD, NAD(P), BIOSYNTHETIC PATHWAY, KEYWDS 2 ANTIBIOTIC EXPDTA X-RAY DIFFRACTION AUTHOR A.MATTEVI,S.ROVIDA REVDAT 3 24-JAN-24 6SW1 1 REMARK REVDAT 2 10-JUN-20 6SW1 1 JRNL REVDAT 1 03-JUN-20 6SW1 0 JRNL AUTH S.ERNST,S.ROVIDA,A.MATTEVI,S.FETZNER,S.L.DREES JRNL TITL PHOTOINDUCED MONOOXYGENATION INVOLVING NAD(P)H-FAD JRNL TITL 2 SEQUENTIAL SINGLE-ELECTRON TRANSFER. JRNL REF NAT COMMUN V. 11 2600 2020 JRNL REFN ESSN 2041-1723 JRNL PMID 32451409 JRNL DOI 10.1038/S41467-020-16450-Y REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0230 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.55 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.9 REMARK 3 NUMBER OF REFLECTIONS : 36923 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.190 REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.222 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1988 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2735 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.14 REMARK 3 BIN R VALUE (WORKING SET) : 0.2290 REMARK 3 BIN FREE R VALUE SET COUNT : 156 REMARK 3 BIN FREE R VALUE : 0.2650 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2878 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 74 REMARK 3 SOLVENT ATOMS : 155 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.91 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.39000 REMARK 3 B22 (A**2) : 0.57000 REMARK 3 B33 (A**2) : -0.18000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.125 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.119 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.079 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.558 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.940 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3017 ; 0.014 ; 0.014 REMARK 3 BOND LENGTHS OTHERS (A): 2660 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4088 ; 1.689 ; 1.688 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6219 ; 1.030 ; 1.647 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 370 ; 6.956 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 196 ;27.462 ;19.184 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 488 ;15.040 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 44 ;18.087 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 373 ; 0.085 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3493 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 552 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 6SW1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 19-SEP-19. REMARK 100 THE DEPOSITION ID IS D_1292104407. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-APR-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.96770 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.1 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 54463 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.610 REMARK 200 RESOLUTION RANGE LOW (A) : 45.080 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 200 DATA REDUNDANCY : 5.600 REMARK 200 R MERGE (I) : 0.04400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.61 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.5 REMARK 200 DATA REDUNDANCY IN SHELL : 5.90 REMARK 200 R MERGE FOR SHELL (I) : 0.74300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2X3N REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.68 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.11 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20,000 (5-10 % W/V), MES BUFFER PH REMARK 280 6.5., VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 23.76650 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 67.61850 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 32.87550 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 67.61850 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 23.76650 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 32.87550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2630 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15580 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 ASP A 3 REMARK 465 ALA A 371 REMARK 465 LEU A 372 REMARK 465 GLN A 373 REMARK 465 GLY A 374 REMARK 465 SER A 375 REMARK 465 SER A 376 REMARK 465 ARG A 377 REMARK 465 THR A 378 REMARK 465 PRO A 379 REMARK 465 GLU A 380 REMARK 465 ALA A 381 REMARK 465 LEU A 382 REMARK 465 GLY A 383 REMARK 465 GLY A 384 REMARK 465 GLU A 385 REMARK 465 ARG A 386 REMARK 465 SER A 387 REMARK 465 TYR A 388 REMARK 465 GLN A 389 REMARK 465 PRO A 390 REMARK 465 VAL A 391 REMARK 465 ARG A 392 REMARK 465 SER A 393 REMARK 465 PRO A 394 REMARK 465 ALA A 395 REMARK 465 PRO A 396 REMARK 465 LEU A 397 REMARK 465 GLY A 398 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 625 O HOH A 732 1.41 REMARK 500 OE2 GLU A 258 O HOH A 601 1.72 REMARK 500 CG ARG A 45 O HOH A 726 2.05 REMARK 500 NH1 ARG A 43 O HOH A 602 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 74 NE - CZ - NH1 ANGL. DEV. = -3.1 DEGREES REMARK 500 ARG A 109 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG A 109 NE - CZ - NH2 ANGL. DEV. = -4.3 DEGREES REMARK 500 ARG A 199 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 41 110.09 -29.11 REMARK 500 HIS A 75 15.67 -144.58 REMARK 500 SER A 165 116.96 -27.38 REMARK 500 ASP A 219 28.65 -150.00 REMARK 500 ASP A 285 -129.05 58.26 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASP A 369 THR A 370 141.42 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 55 0.13 SIDE CHAIN REMARK 500 ARG A 138 0.13 SIDE CHAIN REMARK 500 ARG A 179 0.09 SIDE CHAIN REMARK 500 ARG A 199 0.22 SIDE CHAIN REMARK 500 ARG A 233 0.08 SIDE CHAIN REMARK 500 ARG A 245 0.22 SIDE CHAIN REMARK 500 ARG A 246 0.08 SIDE CHAIN REMARK 500 ARG A 361 0.11 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 PEG A 504 REMARK 610 PEG A 505 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FAD A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 505 DBREF 6SW1 A 1 398 UNP Q9HWJ1 Q9HWJ1_PSEAE 1 398 SEQADV 6SW1 TYR A 41 UNP Q9HWJ1 ARG 41 ENGINEERED MUTATION SEQADV 6SW1 ARG A 43 UNP Q9HWJ1 ILE 43 ENGINEERED MUTATION SEQADV 6SW1 ARG A 45 UNP Q9HWJ1 GLY 45 ENGINEERED MUTATION SEQADV 6SW1 GLY A 105 UNP Q9HWJ1 CYS 105 ENGINEERED MUTATION SEQRES 1 A 398 MET THR ASP ASN HIS ILE ASP VAL LEU ILE ASN GLY CYS SEQRES 2 A 398 GLY ILE GLY GLY ALA MET LEU ALA TYR LEU LEU GLY ARG SEQRES 3 A 398 GLN GLY HIS ARG VAL VAL VAL VAL GLU GLN ALA ARG ARG SEQRES 4 A 398 GLU TYR ALA ARG ASN ARG ALA ASP LEU LEU LYS PRO ALA SEQRES 5 A 398 GLY ILE ARG VAL VAL GLU ALA ALA GLY LEU LEU ALA GLU SEQRES 6 A 398 VAL THR ARG ARG GLY GLY ARG VAL ARG HIS GLU LEU GLU SEQRES 7 A 398 VAL TYR HIS ASP GLY GLU LEU LEU ARG TYR PHE ASN TYR SEQRES 8 A 398 SER SER VAL ASP ALA ARG GLY TYR PHE ILE LEU MET PRO SEQRES 9 A 398 GLY GLU SER LEU ARG ARG LEU VAL LEU GLU LYS ILE ASP SEQRES 10 A 398 GLY GLU ALA THR VAL GLU MET LEU PHE GLU THR ARG ILE SEQRES 11 A 398 GLU ALA VAL GLN ARG ASP GLU ARG HIS ALA ILE ASP GLN SEQRES 12 A 398 VAL ARG LEU ASN ASP GLY ARG VAL LEU ARG PRO ARG VAL SEQRES 13 A 398 VAL VAL GLY ALA ASP GLY ILE ALA SER TYR VAL ARG ARG SEQRES 14 A 398 ARG LEU LEU ASP ILE ASP VAL GLU ARG ARG PRO TYR PRO SEQRES 15 A 398 SER PRO MET LEU VAL GLY THR PHE ALA LEU ALA PRO CYS SEQRES 16 A 398 VAL ALA GLU ARG ASN ARG LEU TYR VAL ASP SER GLN GLY SEQRES 17 A 398 GLY LEU ALA TYR PHE TYR PRO ILE GLY PHE ASP ARG ALA SEQRES 18 A 398 ARG LEU VAL VAL SER PHE PRO ARG GLU GLU ALA ARG GLU SEQRES 19 A 398 LEU MET ALA ASP THR ARG GLY GLU SER LEU ARG ARG ARG SEQRES 20 A 398 LEU GLN ARG PHE VAL GLY ASP GLU SER ALA GLU ALA ILE SEQRES 21 A 398 ALA ALA VAL THR GLY THR SER ARG PHE LYS GLY ILE PRO SEQRES 22 A 398 ILE GLY TYR LEU ASN LEU ASP ARG TYR TRP ALA ASP ASN SEQRES 23 A 398 VAL ALA MET LEU GLY ASP ALA ILE HIS ASN VAL HIS PRO SEQRES 24 A 398 ILE THR GLY GLN GLY MET ASN LEU ALA ILE GLU ASP ALA SEQRES 25 A 398 SER ALA LEU ALA ASP ALA LEU ASP LEU ALA LEU ARG ASP SEQRES 26 A 398 ALA CYS ALA LEU GLU ASP ALA LEU ALA GLY TYR GLN ALA SEQRES 27 A 398 GLU ARG PHE PRO VAL ASN GLN ALA ILE VAL SER TYR GLY SEQRES 28 A 398 HIS ALA LEU ALA THR SER LEU GLU ASP ARG GLN ARG PHE SEQRES 29 A 398 ALA GLY VAL PHE ASP THR ALA LEU GLN GLY SER SER ARG SEQRES 30 A 398 THR PRO GLU ALA LEU GLY GLY GLU ARG SER TYR GLN PRO SEQRES 31 A 398 VAL ARG SER PRO ALA PRO LEU GLY HET FAD A 501 53 HET GOL A 502 6 HET PO4 A 503 5 HET PEG A 504 5 HET PEG A 505 5 HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM GOL GLYCEROL HETNAM PO4 PHOSPHATE ION HETNAM PEG DI(HYDROXYETHYL)ETHER HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 FAD C27 H33 N9 O15 P2 FORMUL 3 GOL C3 H8 O3 FORMUL 4 PO4 O4 P 3- FORMUL 5 PEG 2(C4 H10 O3) FORMUL 7 HOH *155(H2 O) HELIX 1 AA1 GLY A 14 GLN A 27 1 14 HELIX 2 AA2 LYS A 50 ALA A 60 1 11 HELIX 3 AA3 LEU A 62 ARG A 69 1 8 HELIX 4 AA4 ASP A 95 TYR A 99 5 5 HELIX 5 AA5 PRO A 104 GLY A 118 1 15 HELIX 6 AA6 SER A 165 LEU A 171 1 7 HELIX 7 AA7 ALA A 193 ARG A 199 1 7 HELIX 8 AA8 PRO A 228 MET A 236 1 9 HELIX 9 AA9 GLY A 241 ARG A 250 1 10 HELIX 10 AB1 GLY A 253 GLU A 255 5 3 HELIX 11 AB2 SER A 256 ALA A 262 1 7 HELIX 12 AB3 GLY A 291 ALA A 293 5 3 HELIX 13 AB4 HIS A 298 GLY A 302 5 5 HELIX 14 AB5 GLN A 303 ARG A 324 1 22 HELIX 15 AB6 ALA A 328 LEU A 358 1 31 HELIX 16 AB7 ASP A 360 THR A 370 1 11 SHEET 1 AA1 6 VAL A 122 LEU A 125 0 SHEET 2 AA1 6 VAL A 31 VAL A 34 1 N VAL A 33 O LEU A 125 SHEET 3 AA1 6 HIS A 5 ASN A 11 1 N ILE A 10 O VAL A 34 SHEET 4 AA1 6 VAL A 151 GLY A 159 1 O VAL A 158 N ASN A 11 SHEET 5 AA1 6 ILE A 141 LEU A 146 -1 N VAL A 144 O LEU A 152 SHEET 6 AA1 6 ILE A 130 ARG A 135 -1 N GLU A 131 O ARG A 145 SHEET 1 AA2 6 VAL A 122 LEU A 125 0 SHEET 2 AA2 6 VAL A 31 VAL A 34 1 N VAL A 33 O LEU A 125 SHEET 3 AA2 6 HIS A 5 ASN A 11 1 N ILE A 10 O VAL A 34 SHEET 4 AA2 6 VAL A 151 GLY A 159 1 O VAL A 158 N ASN A 11 SHEET 5 AA2 6 VAL A 287 MET A 289 1 O ALA A 288 N GLY A 159 SHEET 6 AA2 6 TRP A 283 ALA A 284 -1 N ALA A 284 O VAL A 287 SHEET 1 AA3 3 LEU A 48 LEU A 49 0 SHEET 2 AA3 3 PHE A 100 LEU A 102 -1 O ILE A 101 N LEU A 49 SHEET 3 AA3 3 ARG A 72 ARG A 74 -1 N ARG A 72 O LEU A 102 SHEET 1 AA4 7 GLU A 84 ASN A 90 0 SHEET 2 AA4 7 GLU A 76 HIS A 81 -1 N VAL A 79 O LEU A 86 SHEET 3 AA4 7 ASN A 200 VAL A 204 1 O LEU A 202 N GLU A 78 SHEET 4 AA4 7 LEU A 210 ILE A 216 -1 O ALA A 211 N TYR A 203 SHEET 5 AA4 7 ARG A 220 SER A 226 -1 O ARG A 222 N TYR A 214 SHEET 6 AA4 7 MET A 185 ALA A 191 -1 N PHE A 190 O ALA A 221 SHEET 7 AA4 7 LYS A 270 ILE A 272 -1 O ILE A 272 N MET A 185 SHEET 1 AA5 2 LEU A 277 ASN A 278 0 SHEET 2 AA5 2 HIS A 295 ASN A 296 -1 O ASN A 296 N LEU A 277 SITE 1 AC1 32 ASN A 11 GLY A 12 GLY A 14 ILE A 15 SITE 2 AC1 32 GLY A 16 VAL A 34 GLU A 35 GLN A 36 SITE 3 AC1 32 ASN A 44 ARG A 45 ALA A 46 ALA A 160 SITE 4 AC1 32 ASP A 161 GLY A 162 TYR A 166 ILE A 272 SITE 5 AC1 32 PRO A 273 GLY A 291 ASP A 292 GLY A 302 SITE 6 AC1 32 GLY A 304 HOH A 604 HOH A 607 HOH A 612 SITE 7 AC1 32 HOH A 619 HOH A 636 HOH A 656 HOH A 664 SITE 8 AC1 32 HOH A 681 HOH A 687 HOH A 692 HOH A 726 SITE 1 AC2 5 ILE A 300 TYR A 350 PEG A 504 PEG A 505 SITE 2 AC2 5 HOH A 666 SITE 1 AC3 6 THR A 239 THR A 264 GLY A 265 THR A 266 SITE 2 AC3 6 SER A 267 ARG A 268 SITE 1 AC4 6 LEU A 48 LYS A 50 PHE A 100 TYR A 212 SITE 2 AC4 6 GOL A 502 PEG A 505 SITE 1 AC5 4 LYS A 50 TYR A 91 GOL A 502 PEG A 504 CRYST1 47.533 65.751 135.237 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021038 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015209 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007394 0.00000