HEADER TRANSCRIPTION 21-SEP-19 6SWI TITLE THE C-TERMINAL DOMAIN OF ARAT, A RESPONSE REGULATOR FROM GEOBACILLUS TITLE 2 STEAROTHERMOPHILUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: TWO-COMPONENT RESPONSE REGULATOR; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GEOBACILLUS STEAROTHERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 1422; SOURCE 4 GENE: ARAT; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS RESPONSE REGULATOR, GEOBACILLUS STEAROTHERMOPHILUS, DNA BINDING, KEYWDS 2 ARABINAN UTILIZATION SYSTEM, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR S.LANSKY,N.LAVID,Y.SHOHAM,G.SHOHAM REVDAT 2 24-JAN-24 6SWI 1 REMARK REVDAT 1 14-OCT-20 6SWI 0 JRNL AUTH S.LANSKY,N.LAVID,Y.SHOHAM,G.SHOHAM JRNL TITL THE C-TERMINAL DOMAIN OF ARAT, A RESPONSE REGULATOR FROM JRNL TITL 2 GEOBACILLUS STEAROTHERMOPHILUS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.13 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.15.2_3472 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.13 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.70 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 36575 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.160 REMARK 3 R VALUE (WORKING SET) : 0.158 REMARK 3 FREE R VALUE : 0.181 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.950 REMARK 3 FREE R VALUE TEST SET COUNT : 1810 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.6950 - 2.6553 1.00 2939 126 0.1709 0.1628 REMARK 3 2 2.6553 - 2.1078 1.00 2785 145 0.1574 0.1925 REMARK 3 3 2.1078 - 1.8414 1.00 2718 154 0.1480 0.1682 REMARK 3 4 1.8414 - 1.6730 1.00 2698 144 0.1505 0.2089 REMARK 3 5 1.6730 - 1.5531 1.00 2716 149 0.1314 0.1472 REMARK 3 6 1.5531 - 1.4616 1.00 2696 153 0.1252 0.1554 REMARK 3 7 1.4616 - 1.3884 1.00 2642 160 0.1361 0.1764 REMARK 3 8 1.3884 - 1.3279 1.00 2700 138 0.1445 0.1734 REMARK 3 9 1.3279 - 1.2768 1.00 2671 137 0.1538 0.1859 REMARK 3 10 1.2768 - 1.2327 1.00 2683 137 0.1614 0.2190 REMARK 3 11 1.2327 - 1.1942 1.00 2675 135 0.1850 0.2223 REMARK 3 12 1.1942 - 1.1601 0.97 2583 127 0.2122 0.2940 REMARK 3 13 1.1601 - 1.1300 0.84 2259 105 0.2150 0.2651 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.100 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.240 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.67 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6SWI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 23-SEP-19. REMARK 100 THE DEPOSITION ID IS D_1292104438. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-DEC-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM14 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.95 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36653 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.130 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 7.400 REMARK 200 R MERGE (I) : 0.06300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 35.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.13 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.15 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.40100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3LSG REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 27.02 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.69 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.95 M KNA-TARTRATE, 0.1 M TRIS PH REMARK 280 8.5, AND 0.5 % PEG MME 5K, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 13.42750 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 46.23150 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 19.37200 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 46.23150 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 13.42750 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 19.37200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7950 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 290 CB OG REMARK 470 ARG A 291 CD NE CZ NH1 NH2 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6SWF RELATED DB: PDB REMARK 900 RELATED ID: 6SWB RELATED DB: PDB DBREF 6SWI A 290 404 UNP B3EYL7 B3EYL7_GEOSE 290 404 SEQADV 6SWI HIS A 405 UNP B3EYL7 EXPRESSION TAG SEQADV 6SWI HIS A 406 UNP B3EYL7 EXPRESSION TAG SEQADV 6SWI HIS A 407 UNP B3EYL7 EXPRESSION TAG SEQADV 6SWI HIS A 408 UNP B3EYL7 EXPRESSION TAG SEQADV 6SWI HIS A 409 UNP B3EYL7 EXPRESSION TAG SEQADV 6SWI HIS A 410 UNP B3EYL7 EXPRESSION TAG SEQRES 1 A 121 SER ARG LEU SER PRO ILE VAL ARG ARG ALA ARG GLN TYR SEQRES 2 A 121 ILE GLN LYS HIS PHE SER GLN SER ASP LEU THR LEU GLU SEQRES 3 A 121 SER VAL ALA GLU PHE LEU ASN VAL SER PRO VAL TYR LEU SEQRES 4 A 121 SER ARG MET ILE LYS GLN GLU LEU GLY ILE SER PHE ILE SEQRES 5 A 121 HIS LEU LEU THR LYS ILE ARG MET GLU LYS ALA ALA GLU SEQRES 6 A 121 LEU LEU LEU SER THR GLU LEU PRO ILE HIS GLU ILE ALA SEQRES 7 A 121 GLU ARG VAL GLY TYR ASP THR GLN HIS TYR PHE SER THR SEQRES 8 A 121 ALA PHE LYS LYS ALA MET GLY VAL SER PRO ASN GLN TYR SEQRES 9 A 121 ARG ARG THR ARG MET ILE SER GLU TYR THR ASP HIS HIS SEQRES 10 A 121 HIS HIS HIS HIS FORMUL 2 HOH *136(H2 O) HELIX 1 AA1 SER A 293 PHE A 307 1 15 HELIX 2 AA2 THR A 313 ASN A 322 1 10 HELIX 3 AA3 SER A 324 GLY A 337 1 14 HELIX 4 AA4 SER A 339 THR A 359 1 21 HELIX 5 AA5 PRO A 362 VAL A 370 1 9 HELIX 6 AA6 THR A 374 GLY A 387 1 14 HELIX 7 AA7 SER A 389 MET A 398 1 10 CRYST1 26.855 38.744 92.463 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.037237 0.000000 0.000000 0.00000 SCALE2 0.000000 0.025810 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010815 0.00000