HEADER LYASE 22-SEP-19 6SWM TITLE SELENOL BOUND CARBONIC ANHYDRASE I COMPND MOL_ID: 1; COMPND 2 MOLECULE: CARBONIC ANHYDRASE 1; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: CARBONATE DEHYDRATASE I,CARBONIC ANHYDRASE B,CAB,CARBONIC COMPND 5 ANHYDRASE I,CA-I; COMPND 6 EC: 4.2.1.1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CA1; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606 KEYWDS CARBONIC ANHYDRASE, INHIBITOR, SELENOL, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR A.ANGELI,M.FERRARONI REVDAT 3 24-JAN-24 6SWM 1 REMARK REVDAT 2 21-APR-21 6SWM 1 JRNL REVDAT 1 07-OCT-20 6SWM 0 JRNL AUTH A.ANGELI,D.TANINI,A.NOCENTINI,A.CAPPERUCCI,M.FERRARONI, JRNL AUTH 2 P.GRATTERI,C.T.SUPURAN JRNL TITL SELENOLS: A NEW CLASS OF CARBONIC ANHYDRASE INHIBITORS. JRNL REF CHEM.COMMUN.(CAMB.) V. 55 648 2019 JRNL REFN ESSN 1364-548X JRNL PMID 30560259 JRNL DOI 10.1039/C8CC08562E REMARK 2 REMARK 2 RESOLUTION. 2.77 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0253 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.77 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.66 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 3 NUMBER OF REFLECTIONS : 12826 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.275 REMARK 3 R VALUE (WORKING SET) : 0.272 REMARK 3 FREE R VALUE : 0.330 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 661 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.77 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.84 REMARK 3 REFLECTION IN BIN (WORKING SET) : 876 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.90 REMARK 3 BIN R VALUE (WORKING SET) : 0.4020 REMARK 3 BIN FREE R VALUE SET COUNT : 43 REMARK 3 BIN FREE R VALUE : 0.3670 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3954 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 20 REMARK 3 SOLVENT ATOMS : 82 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 46.33 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : -0.38000 REMARK 3 B33 (A**2) : 0.38000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.529 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.522 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 30.111 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.881 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.828 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4137 ; 0.006 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5645 ; 1.230 ; 1.633 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 524 ; 8.032 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 200 ;38.540 ;23.650 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 627 ;18.061 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;16.321 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 534 ; 0.090 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3252 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 6SWM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 23-SEP-19. REMARK 100 THE DEPOSITION ID IS D_1292104442. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-AUG-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : SEALED TUBE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : BRUKER IMUS MICROFOCUS REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54184 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : BRUKER PHOTON III REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13857 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.750 REMARK 200 RESOLUTION RANGE LOW (A) : 46.660 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 200 DATA REDUNDANCY : 4.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.1900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.91 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: 3LXE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.33 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.29 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 28-31% PEG4000, 0.2 M SODIUM ACETATE, REMARK 280 0.1 M TRIS PH 8.5-9.0, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 296K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 31.39450 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 59.59550 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 34.79300 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 59.59550 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 31.39450 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 34.79300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 ALA A 1 REMARK 465 SER A 2 REMARK 465 PRO A 3 REMARK 465 ASP A 4 REMARK 465 MET B 0 REMARK 465 ALA B 1 REMARK 465 SER B 2 REMARK 465 PRO B 3 REMARK 465 ASP B 4 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 10 CG CD CE NZ REMARK 470 GLN A 15 OE1 NE2 REMARK 470 LEU A 19 CG CD1 CD2 REMARK 470 LYS A 39 CD CE NZ REMARK 470 LYS A 45 CD CE NZ REMARK 470 ARG A 173 CG CD NE CZ NH1 NH2 REMARK 470 ASP B 9 CB CG OD1 OD2 REMARK 470 LYS B 10 CG CD CE NZ REMARK 470 ILE B 22 CG1 CG2 CD1 REMARK 470 LYS B 34 NZ REMARK 470 ILE B 47 CG1 CG2 CD1 REMARK 470 SER B 85 OG REMARK 470 ASP B 86 CG OD1 OD2 REMARK 470 HIS B 103 CG ND1 CD2 CE1 NE2 REMARK 470 LYS B 113 CE NZ REMARK 470 LYS B 127 CG CD CE NZ REMARK 470 SER B 129 OG REMARK 470 GLU B 133 CG CD OE1 OE2 REMARK 470 LYS B 137 CE NZ REMARK 470 LYS B 213 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CG2 VAL B 143 O LVW B 302 1.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 8 -129.81 -64.50 REMARK 500 PRO A 21 -7.24 -54.14 REMARK 500 ASN A 24 47.94 -96.98 REMARK 500 LYS A 57 -70.07 -113.41 REMARK 500 ASN A 178 58.82 72.88 REMARK 500 LEU A 189 34.01 -89.44 REMARK 500 ASN A 244 40.17 -152.81 REMARK 500 PRO A 250 141.14 -37.77 REMARK 500 ASN B 11 11.28 -141.35 REMARK 500 PRO B 13 1.72 -64.37 REMARK 500 ASN B 24 52.75 -98.81 REMARK 500 ASN B 27 55.89 -113.49 REMARK 500 LYS B 57 -62.45 -147.37 REMARK 500 ASN B 75 53.23 -100.42 REMARK 500 GLN B 92 147.81 179.49 REMARK 500 GLU B 102 -86.65 -82.84 REMARK 500 SER B 129 -82.39 -77.76 REMARK 500 ALA B 135 2.66 -64.24 REMARK 500 ALA B 138 -49.85 -27.46 REMARK 500 ALA B 142 111.36 -166.07 REMARK 500 ASN B 244 38.67 -159.62 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASP B 72 ASN B 73 -148.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 432 DISTANCE = 6.58 ANGSTROMS REMARK 525 HOH A 433 DISTANCE = 6.82 ANGSTROMS REMARK 525 HOH A 434 DISTANCE = 7.46 ANGSTROMS REMARK 525 HOH A 435 DISTANCE = 10.92 ANGSTROMS REMARK 525 HOH B 446 DISTANCE = 6.67 ANGSTROMS REMARK 525 HOH B 447 DISTANCE = 9.83 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 94 NE2 REMARK 620 2 HIS A 96 NE2 102.4 REMARK 620 3 HIS A 119 ND1 101.5 84.2 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 94 NE2 REMARK 620 2 HIS B 96 NE2 96.5 REMARK 620 3 HIS B 119 ND1 111.2 97.0 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LVW A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LVW B 302 DBREF 6SWM A 0 260 UNP P00915 CAH1_HUMAN 1 261 DBREF 6SWM B 0 260 UNP P00915 CAH1_HUMAN 1 261 SEQRES 1 A 261 MET ALA SER PRO ASP TRP GLY TYR ASP ASP LYS ASN GLY SEQRES 2 A 261 PRO GLU GLN TRP SER LYS LEU TYR PRO ILE ALA ASN GLY SEQRES 3 A 261 ASN ASN GLN SER PRO VAL ASP ILE LYS THR SER GLU THR SEQRES 4 A 261 LYS HIS ASP THR SER LEU LYS PRO ILE SER VAL SER TYR SEQRES 5 A 261 ASN PRO ALA THR ALA LYS GLU ILE ILE ASN VAL GLY HIS SEQRES 6 A 261 SER PHE HIS VAL ASN PHE GLU ASP ASN ASP ASN ARG SER SEQRES 7 A 261 VAL LEU LYS GLY GLY PRO PHE SER ASP SER TYR ARG LEU SEQRES 8 A 261 PHE GLN PHE HIS PHE HIS TRP GLY SER THR ASN GLU HIS SEQRES 9 A 261 GLY SER GLU HIS THR VAL ASP GLY VAL LYS TYR SER ALA SEQRES 10 A 261 GLU LEU HIS VAL ALA HIS TRP ASN SER ALA LYS TYR SER SEQRES 11 A 261 SER LEU ALA GLU ALA ALA SER LYS ALA ASP GLY LEU ALA SEQRES 12 A 261 VAL ILE GLY VAL LEU MET LYS VAL GLY GLU ALA ASN PRO SEQRES 13 A 261 LYS LEU GLN LYS VAL LEU ASP ALA LEU GLN ALA ILE LYS SEQRES 14 A 261 THR LYS GLY LYS ARG ALA PRO PHE THR ASN PHE ASP PRO SEQRES 15 A 261 SER THR LEU LEU PRO SER SER LEU ASP PHE TRP THR TYR SEQRES 16 A 261 PRO GLY SER LEU THR HIS PRO PRO LEU TYR GLU SER VAL SEQRES 17 A 261 THR TRP ILE ILE CYS LYS GLU SER ILE SER VAL SER SER SEQRES 18 A 261 GLU GLN LEU ALA GLN PHE ARG SER LEU LEU SER ASN VAL SEQRES 19 A 261 GLU GLY ASP ASN ALA VAL PRO MET GLN HIS ASN ASN ARG SEQRES 20 A 261 PRO THR GLN PRO LEU LYS GLY ARG THR VAL ARG ALA SER SEQRES 21 A 261 PHE SEQRES 1 B 261 MET ALA SER PRO ASP TRP GLY TYR ASP ASP LYS ASN GLY SEQRES 2 B 261 PRO GLU GLN TRP SER LYS LEU TYR PRO ILE ALA ASN GLY SEQRES 3 B 261 ASN ASN GLN SER PRO VAL ASP ILE LYS THR SER GLU THR SEQRES 4 B 261 LYS HIS ASP THR SER LEU LYS PRO ILE SER VAL SER TYR SEQRES 5 B 261 ASN PRO ALA THR ALA LYS GLU ILE ILE ASN VAL GLY HIS SEQRES 6 B 261 SER PHE HIS VAL ASN PHE GLU ASP ASN ASP ASN ARG SER SEQRES 7 B 261 VAL LEU LYS GLY GLY PRO PHE SER ASP SER TYR ARG LEU SEQRES 8 B 261 PHE GLN PHE HIS PHE HIS TRP GLY SER THR ASN GLU HIS SEQRES 9 B 261 GLY SER GLU HIS THR VAL ASP GLY VAL LYS TYR SER ALA SEQRES 10 B 261 GLU LEU HIS VAL ALA HIS TRP ASN SER ALA LYS TYR SER SEQRES 11 B 261 SER LEU ALA GLU ALA ALA SER LYS ALA ASP GLY LEU ALA SEQRES 12 B 261 VAL ILE GLY VAL LEU MET LYS VAL GLY GLU ALA ASN PRO SEQRES 13 B 261 LYS LEU GLN LYS VAL LEU ASP ALA LEU GLN ALA ILE LYS SEQRES 14 B 261 THR LYS GLY LYS ARG ALA PRO PHE THR ASN PHE ASP PRO SEQRES 15 B 261 SER THR LEU LEU PRO SER SER LEU ASP PHE TRP THR TYR SEQRES 16 B 261 PRO GLY SER LEU THR HIS PRO PRO LEU TYR GLU SER VAL SEQRES 17 B 261 THR TRP ILE ILE CYS LYS GLU SER ILE SER VAL SER SER SEQRES 18 B 261 GLU GLN LEU ALA GLN PHE ARG SER LEU LEU SER ASN VAL SEQRES 19 B 261 GLU GLY ASP ASN ALA VAL PRO MET GLN HIS ASN ASN ARG SEQRES 20 B 261 PRO THR GLN PRO LEU LYS GLY ARG THR VAL ARG ALA SER SEQRES 21 B 261 PHE HET ZN A 301 1 HET LVW A 302 9 HET ZN B 301 1 HET LVW B 302 9 HETNAM ZN ZINC ION HETNAM LVW (2~{R})-1-PROP-2-ENOXY-3-SELANYL-PROPAN-2-OL FORMUL 3 ZN 2(ZN 2+) FORMUL 4 LVW 2(C6 H12 O2 SE) FORMUL 7 HOH *82(H2 O) HELIX 1 AA1 GLY A 12 GLU A 14 5 3 HELIX 2 AA2 GLN A 15 TYR A 20 1 6 HELIX 3 AA3 PRO A 21 GLY A 25 5 5 HELIX 4 AA4 SER A 130 ALA A 135 1 6 HELIX 5 AA5 ASN A 154 LYS A 156 5 3 HELIX 6 AA6 LEU A 157 LEU A 164 1 8 HELIX 7 AA7 GLN A 165 ILE A 167 5 3 HELIX 8 AA8 ASP A 180 LEU A 185 5 6 HELIX 9 AA9 SER A 219 SER A 228 1 10 HELIX 10 AB1 GLN B 15 LEU B 19 5 5 HELIX 11 AB2 TYR B 20 GLY B 25 5 6 HELIX 12 AB3 LYS B 34 THR B 38 5 5 HELIX 13 AB4 ASN B 52 ALA B 54 5 3 HELIX 14 AB5 SER B 130 ALA B 135 1 6 HELIX 15 AB6 ASN B 154 LYS B 156 5 3 HELIX 16 AB7 LEU B 157 LEU B 164 1 8 HELIX 17 AB8 GLN B 165 ILE B 167 5 3 HELIX 18 AB9 ASP B 180 LEU B 184 5 5 HELIX 19 AC1 SER B 219 ARG B 227 1 9 SHEET 1 AA1 2 ASP A 32 ILE A 33 0 SHEET 2 AA1 2 THR A 108 VAL A 109 1 O THR A 108 N ILE A 33 SHEET 1 AA2 2 LYS A 39 HIS A 40 0 SHEET 2 AA2 2 ARG A 257 ALA A 258 1 O ALA A 258 N LYS A 39 SHEET 1 AA3 7 SER A 48 SER A 50 0 SHEET 2 AA3 7 VAL A 78 LYS A 80 -1 O VAL A 78 N SER A 50 SHEET 3 AA3 7 TYR A 88 TRP A 97 -1 O TYR A 88 N LEU A 79 SHEET 4 AA3 7 ALA A 116 ASN A 124 -1 O TRP A 123 N ARG A 89 SHEET 5 AA3 7 LEU A 141 VAL A 150 -1 O ILE A 144 N VAL A 120 SHEET 6 AA3 7 VAL A 207 CYS A 212 1 O ILE A 210 N GLY A 145 SHEET 7 AA3 7 PHE A 191 PRO A 195 -1 N TRP A 192 O ILE A 211 SHEET 1 AA4 7 ARG A 173 PRO A 175 0 SHEET 2 AA4 7 ALA A 56 ASN A 61 -1 N ILE A 59 O ALA A 174 SHEET 3 AA4 7 PHE A 66 PHE A 70 -1 O HIS A 67 N ILE A 60 SHEET 4 AA4 7 TYR A 88 TRP A 97 -1 O PHE A 91 N PHE A 70 SHEET 5 AA4 7 ALA A 116 ASN A 124 -1 O TRP A 123 N ARG A 89 SHEET 6 AA4 7 LEU A 141 VAL A 150 -1 O ILE A 144 N VAL A 120 SHEET 7 AA4 7 ILE A 216 VAL A 218 1 O ILE A 216 N LYS A 149 SHEET 1 AA5 3 ASP B 32 ILE B 33 0 SHEET 2 AA5 3 THR B 108 VAL B 109 1 O THR B 108 N ILE B 33 SHEET 3 AA5 3 VAL B 112 LYS B 113 -1 O VAL B 112 N VAL B 109 SHEET 1 AA610 LYS B 39 HIS B 40 0 SHEET 2 AA610 ARG B 257 ALA B 258 1 O ALA B 258 N LYS B 39 SHEET 3 AA610 PHE B 191 GLY B 196 -1 N THR B 193 O ARG B 257 SHEET 4 AA610 VAL B 207 CYS B 212 -1 O ILE B 211 N TRP B 192 SHEET 5 AA610 LEU B 141 VAL B 150 1 N GLY B 145 O ILE B 210 SHEET 6 AA610 ALA B 116 TRP B 123 -1 N ALA B 116 O MET B 148 SHEET 7 AA610 TYR B 88 TRP B 97 -1 N GLN B 92 O ALA B 121 SHEET 8 AA610 PHE B 66 PHE B 70 -1 N PHE B 70 O PHE B 91 SHEET 9 AA610 ALA B 56 ASN B 61 -1 N GLU B 58 O ASN B 69 SHEET 10 AA610 ARG B 173 PRO B 175 -1 O ALA B 174 N ILE B 59 SHEET 1 AA7 6 ILE B 47 SER B 50 0 SHEET 2 AA7 6 VAL B 78 GLY B 81 -1 O LYS B 80 N SER B 48 SHEET 3 AA7 6 TYR B 88 TRP B 97 -1 O TYR B 88 N LEU B 79 SHEET 4 AA7 6 ALA B 116 TRP B 123 -1 O ALA B 121 N GLN B 92 SHEET 5 AA7 6 LEU B 141 VAL B 150 -1 O MET B 148 N ALA B 116 SHEET 6 AA7 6 ILE B 216 VAL B 218 1 O ILE B 216 N LEU B 147 LINK OG1 THR A 199 SE LVW A 302 1555 1555 2.75 LINK NE2 HIS A 94 ZN ZN A 301 1555 1555 1.97 LINK NE2 HIS A 96 ZN ZN A 301 1555 1555 1.90 LINK ND1 HIS A 119 ZN ZN A 301 1555 1555 2.16 LINK NE2 HIS B 94 ZN ZN B 301 1555 1555 1.89 LINK NE2 HIS B 96 ZN ZN B 301 1555 1555 2.07 LINK ND1 HIS B 119 ZN ZN B 301 1555 1555 2.01 CISPEP 1 SER A 29 PRO A 30 0 4.12 CISPEP 2 PRO A 201 PRO A 202 0 10.30 CISPEP 3 SER B 29 PRO B 30 0 12.84 CISPEP 4 PRO B 201 PRO B 202 0 12.61 SITE 1 AC1 5 HIS A 94 HIS A 96 HIS A 119 THR A 199 SITE 2 AC1 5 LVW A 302 SITE 1 AC2 7 GLN A 92 HIS A 94 HIS A 119 VAL A 143 SITE 2 AC2 7 THR A 199 TRP A 209 ZN A 301 SITE 1 AC3 5 HIS B 94 HIS B 96 HIS B 119 THR B 199 SITE 2 AC3 5 LVW B 302 SITE 1 AC4 9 GLN B 92 HIS B 94 HIS B 119 VAL B 143 SITE 2 AC4 9 LEU B 198 THR B 199 TRP B 209 ZN B 301 SITE 3 AC4 9 HOH B 432 CRYST1 62.789 69.586 119.191 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015926 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014371 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008390 0.00000