HEADER METAL TRANSPORT 25-SEP-19 6SXF TITLE CRYSTAL STRUCTURE OF THE VOLTAGE-GATED SODIUM CHANNEL NAVMS (F208L) IN TITLE 2 COMPLEX WITH TAMOXIFEN (2.8 ANGSTROM RESOLUTION) COMPND MOL_ID: 1; COMPND 2 MOLECULE: ION TRANSPORT PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MAGNETOCOCCUS MARINUS MC-1; SOURCE 3 ORGANISM_TAXID: 156889; SOURCE 4 GENE: MMC1_0798; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS VOLTAGE GATED SODIUM CHANNEL, MEMBRANE PROTEIN, METAL TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR A.SULA,D.HOLLINGWORTH,B.A.WALLACE REVDAT 4 24-JAN-24 6SXF 1 REMARK REVDAT 3 31-MAR-21 6SXF 1 JRNL REVDAT 2 10-FEB-21 6SXF 1 JRNL REVDAT 1 03-FEB-21 6SXF 0 JRNL AUTH A.SULA,D.HOLLINGWORTH,L.C.T.NG,M.LARMORE,P.G.DECAEN, JRNL AUTH 2 B.A.WALLACE JRNL TITL A TAMOXIFEN RECEPTOR WITHIN A VOLTAGE-GATED SODIUM CHANNEL. JRNL REF MOL.CELL V. 81 1160 2021 JRNL REFN ISSN 1097-2765 JRNL PMID 33503406 JRNL DOI 10.1016/J.MOLCEL.2020.12.048 REMARK 2 REMARK 2 RESOLUTION. 2.84 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.3 (19-MAR-2020) REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.84 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 76.34 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 30439 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.222 REMARK 3 R VALUE (WORKING SET) : 0.220 REMARK 3 FREE R VALUE : 0.269 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.910 REMARK 3 FREE R VALUE TEST SET COUNT : 1495 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 51 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.84 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.86 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.44 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 609 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2483 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 579 REMARK 3 BIN R VALUE (WORKING SET) : 0.2431 REMARK 3 BIN FREE R VALUE : 0.3401 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.93 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 30 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4183 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 192 REMARK 3 SOLVENT ATOMS : 135 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 97.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -15.19680 REMARK 3 B22 (A**2) : -15.19680 REMARK 3 B33 (A**2) : 30.39360 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.390 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.388 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.293 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.379 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.293 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.861 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.811 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 4496 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 6088 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1602 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES : 800 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 4467 ; 10.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 589 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : 6 ; 1.000 ; HARMONIC REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 3866 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 0.89 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.73 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 19.78 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): 4.3215 36.8036 85.4770 REMARK 3 T TENSOR REMARK 3 T11: 0.1191 T22: -0.2301 REMARK 3 T33: -0.1166 T12: 0.0742 REMARK 3 T13: -0.0392 T23: 0.0846 REMARK 3 L TENSOR REMARK 3 L11: 1.0367 L22: 0.5112 REMARK 3 L33: 3.9878 L12: -0.0187 REMARK 3 L13: 0.4779 L23: -0.3284 REMARK 3 S TENSOR REMARK 3 S11: 0.0116 S12: -0.3011 S13: -0.2225 REMARK 3 S21: 0.3122 S22: 0.0158 S23: -0.0502 REMARK 3 S31: 1.0101 S32: 0.1859 S33: -0.0274 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { B|* } REMARK 3 ORIGIN FOR THE GROUP (A): -8.1274 38.3252 20.6731 REMARK 3 T TENSOR REMARK 3 T11: 0.0898 T22: -0.1821 REMARK 3 T33: -0.1209 T12: -0.1984 REMARK 3 T13: -0.0554 T23: -0.0848 REMARK 3 L TENSOR REMARK 3 L11: 0.9881 L22: 0.5490 REMARK 3 L33: 4.7255 L12: -0.1251 REMARK 3 L13: 0.3660 L23: 0.0698 REMARK 3 S TENSOR REMARK 3 S11: 0.0530 S12: 0.2894 S13: -0.2399 REMARK 3 S21: -0.3193 S22: 0.0117 S23: 0.1085 REMARK 3 S31: 1.1707 S32: -0.6355 S33: -0.0647 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6SXF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 26-SEP-19. REMARK 100 THE DEPOSITION ID IS D_1292104504. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-FEB-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I24 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9686 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30492 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.839 REMARK 200 RESOLUTION RANGE LOW (A) : 76.340 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 15.40 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.84 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.91 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 15.80 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5HVX REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 76.32 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 5.19 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.05 M NACL, 0.1 M MES BUFFER, PH 6.5, REMARK 280 37.8% V/V POLYETHYLENE GLYCOL (PEG) 400 AND 4% ETHYLENE GLYCOL, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 4 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y+1/2,X+1/2,Z REMARK 290 4555 Y+1/2,-X+1/2,Z REMARK 290 5555 -X+1/2,Y+1/2,-Z REMARK 290 6555 X+1/2,-Y+1/2,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 53.97800 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 53.97800 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 53.97800 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 53.97800 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 53.97800 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 53.97800 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 53.97800 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 53.97800 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 26550 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 49760 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -244.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 107.95600 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 53.97800 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 53.97800 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 -53.97800 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 53.97800 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 31340 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 47640 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -264.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 107.95600 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 53.97800 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 53.97800 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 -53.97800 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 53.97800 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 NA NA A 301 LIES ON A SPECIAL POSITION. REMARK 375 NA NA A 302 LIES ON A SPECIAL POSITION. REMARK 375 NA NA A 303 LIES ON A SPECIAL POSITION. REMARK 375 NA NA B 301 LIES ON A SPECIAL POSITION. REMARK 375 NA NA B 302 LIES ON A SPECIAL POSITION. REMARK 375 NA NA B 303 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 ALA A 92 REMARK 465 GLN A 93 REMARK 465 GLY A 94 REMARK 465 SER A 95 REMARK 465 LEU A 96 REMARK 465 SER A 97 REMARK 465 VAL A 98 REMARK 465 LEU A 99 REMARK 465 GLN A 270 REMARK 465 PRO A 271 REMARK 465 GLN A 272 REMARK 465 LYS A 273 REMARK 465 LYS A 274 REMARK 465 GLY B -2 REMARK 465 ALA B 92 REMARK 465 GLN B 93 REMARK 465 GLY B 94 REMARK 465 SER B 95 REMARK 465 LEU B 96 REMARK 465 SER B 97 REMARK 465 VAL B 98 REMARK 465 LEU B 99 REMARK 465 GLN B 270 REMARK 465 PRO B 271 REMARK 465 GLN B 272 REMARK 465 LYS B 273 REMARK 465 LYS B 274 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR B 209 OG1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 3 -36.50 -135.29 REMARK 500 PHE A 102 33.39 -95.57 REMARK 500 SER A 179 25.50 49.84 REMARK 500 SER A 181 -61.96 -93.01 REMARK 500 LEU B 89 58.06 -96.93 REMARK 500 SER B 179 24.83 48.91 REMARK 500 ILE B 184 -62.83 -121.74 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 461 DISTANCE = 6.89 ANGSTROMS REMARK 525 HOH A 462 DISTANCE = 7.02 ANGSTROMS REMARK 525 HOH A 463 DISTANCE = 8.54 ANGSTROMS REMARK 525 HOH A 464 DISTANCE = 9.24 ANGSTROMS REMARK 525 HOH B 466 DISTANCE = 6.32 ANGSTROMS REMARK 525 HOH B 467 DISTANCE = 6.93 ANGSTROMS REMARK 525 HOH B 468 DISTANCE = 8.11 ANGSTROMS REMARK 525 HOH B 469 DISTANCE = 8.41 ANGSTROMS REMARK 525 HOH B 470 DISTANCE = 8.45 ANGSTROMS REMARK 525 HOH B 471 DISTANCE = 16.05 ANGSTROMS REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 12P A 305 REMARK 610 2CV A 306 REMARK 610 12P B 305 REMARK 610 2CV B 306 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 303 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 407 O REMARK 620 2 HOH A 407 O 55.9 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 2CV A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 12P A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 2CV A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CTX A 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 2CV B 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 12P B 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 2CV B 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CTX B 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CTX B 308 DBREF 6SXF A 1 274 UNP A0L5S6 A0L5S6_MAGMM 1 274 DBREF 6SXF B 1 274 UNP A0L5S6 A0L5S6_MAGMM 1 274 SEQADV 6SXF GLY A -2 UNP A0L5S6 EXPRESSION TAG SEQADV 6SXF SER A -1 UNP A0L5S6 EXPRESSION TAG SEQADV 6SXF HIS A 0 UNP A0L5S6 EXPRESSION TAG SEQADV 6SXF LEU A 208 UNP A0L5S6 PHE 208 ENGINEERED MUTATION SEQADV 6SXF GLY B -2 UNP A0L5S6 EXPRESSION TAG SEQADV 6SXF SER B -1 UNP A0L5S6 EXPRESSION TAG SEQADV 6SXF HIS B 0 UNP A0L5S6 EXPRESSION TAG SEQADV 6SXF LEU B 208 UNP A0L5S6 PHE 208 ENGINEERED MUTATION SEQRES 1 A 277 GLY SER HIS MET SER ARG LYS ILE ARG ASP LEU ILE GLU SEQRES 2 A 277 SER LYS ARG PHE GLN ASN VAL ILE THR ALA ILE ILE VAL SEQRES 3 A 277 LEU ASN GLY ALA VAL LEU GLY LEU LEU THR ASP THR THR SEQRES 4 A 277 LEU SER ALA SER SER GLN ASN LEU LEU GLU ARG VAL ASP SEQRES 5 A 277 GLN LEU CYS LEU THR ILE PHE ILE VAL GLU ILE SER LEU SEQRES 6 A 277 LYS ILE TYR ALA TYR GLY VAL ARG GLY PHE PHE ARG SER SEQRES 7 A 277 GLY TRP ASN LEU PHE ASP PHE VAL ILE VAL ALA ILE ALA SEQRES 8 A 277 LEU MET PRO ALA GLN GLY SER LEU SER VAL LEU ARG THR SEQRES 9 A 277 PHE ARG ILE PHE ARG VAL MET ARG LEU VAL SER VAL ILE SEQRES 10 A 277 PRO THR MET ARG ARG VAL VAL GLN GLY MET LEU LEU ALA SEQRES 11 A 277 LEU PRO GLY VAL GLY SER VAL ALA ALA LEU LEU THR VAL SEQRES 12 A 277 VAL PHE TYR ILE ALA ALA VAL MET ALA THR ASN LEU TYR SEQRES 13 A 277 GLY ALA THR PHE PRO GLU TRP PHE GLY ASP LEU SER LYS SEQRES 14 A 277 SER LEU TYR THR LEU PHE GLN VAL MET THR LEU GLU SER SEQRES 15 A 277 TRP SER MET GLY ILE VAL ARG PRO VAL MET ASN VAL HIS SEQRES 16 A 277 PRO ASN ALA TRP VAL PHE PHE ILE PRO PHE ILE MET LEU SEQRES 17 A 277 THR THR LEU THR VAL LEU ASN LEU PHE ILE GLY ILE ILE SEQRES 18 A 277 VAL ASP ALA MET ALA ILE THR LYS GLU GLN GLU GLU GLU SEQRES 19 A 277 ALA LYS THR GLY HIS HIS GLN GLU PRO ILE SER GLN THR SEQRES 20 A 277 LEU LEU HIS LEU GLY ASP ARG LEU ASP ARG ILE GLU LYS SEQRES 21 A 277 GLN LEU ALA GLN ASN ASN GLU LEU LEU GLN ARG GLN GLN SEQRES 22 A 277 PRO GLN LYS LYS SEQRES 1 B 277 GLY SER HIS MET SER ARG LYS ILE ARG ASP LEU ILE GLU SEQRES 2 B 277 SER LYS ARG PHE GLN ASN VAL ILE THR ALA ILE ILE VAL SEQRES 3 B 277 LEU ASN GLY ALA VAL LEU GLY LEU LEU THR ASP THR THR SEQRES 4 B 277 LEU SER ALA SER SER GLN ASN LEU LEU GLU ARG VAL ASP SEQRES 5 B 277 GLN LEU CYS LEU THR ILE PHE ILE VAL GLU ILE SER LEU SEQRES 6 B 277 LYS ILE TYR ALA TYR GLY VAL ARG GLY PHE PHE ARG SER SEQRES 7 B 277 GLY TRP ASN LEU PHE ASP PHE VAL ILE VAL ALA ILE ALA SEQRES 8 B 277 LEU MET PRO ALA GLN GLY SER LEU SER VAL LEU ARG THR SEQRES 9 B 277 PHE ARG ILE PHE ARG VAL MET ARG LEU VAL SER VAL ILE SEQRES 10 B 277 PRO THR MET ARG ARG VAL VAL GLN GLY MET LEU LEU ALA SEQRES 11 B 277 LEU PRO GLY VAL GLY SER VAL ALA ALA LEU LEU THR VAL SEQRES 12 B 277 VAL PHE TYR ILE ALA ALA VAL MET ALA THR ASN LEU TYR SEQRES 13 B 277 GLY ALA THR PHE PRO GLU TRP PHE GLY ASP LEU SER LYS SEQRES 14 B 277 SER LEU TYR THR LEU PHE GLN VAL MET THR LEU GLU SER SEQRES 15 B 277 TRP SER MET GLY ILE VAL ARG PRO VAL MET ASN VAL HIS SEQRES 16 B 277 PRO ASN ALA TRP VAL PHE PHE ILE PRO PHE ILE MET LEU SEQRES 17 B 277 THR THR LEU THR VAL LEU ASN LEU PHE ILE GLY ILE ILE SEQRES 18 B 277 VAL ASP ALA MET ALA ILE THR LYS GLU GLN GLU GLU GLU SEQRES 19 B 277 ALA LYS THR GLY HIS HIS GLN GLU PRO ILE SER GLN THR SEQRES 20 B 277 LEU LEU HIS LEU GLY ASP ARG LEU ASP ARG ILE GLU LYS SEQRES 21 B 277 GLN LEU ALA GLN ASN ASN GLU LEU LEU GLN ARG GLN GLN SEQRES 22 B 277 PRO GLN LYS LYS HET NA A 301 1 HET NA A 302 1 HET NA A 303 1 HET 2CV A 304 26 HET 12P A 305 16 HET 2CV A 306 8 HET CTX A 307 28 HET NA B 301 1 HET NA B 302 1 HET NA B 303 1 HET 2CV B 304 26 HET 12P B 305 18 HET 2CV B 306 8 HET CTX B 307 28 HET CTX B 308 57 HETNAM NA SODIUM ION HETNAM 2CV HEGA-10 HETNAM 12P DODECAETHYLENE GLYCOL HETNAM CTX (Z)-2-[4-(1,2)-DIPHENYL-1-BUTENYL)-PHENOXY]-N,N- HETNAM 2 CTX DIMETHYLETHANAMINE HETSYN 12P POLYETHYLENE GLYCOL PEG400 HETSYN CTX TRANS FORM OF TAMOXIFEN FORMUL 3 NA 6(NA 1+) FORMUL 6 2CV 4(C18 H37 N O7) FORMUL 7 12P 2(C24 H50 O13) FORMUL 9 CTX 3(C26 H29 N O) FORMUL 18 HOH *135(H2 O) HELIX 1 AA1 HIS A 0 GLU A 10 1 11 HELIX 2 AA2 SER A 11 LEU A 32 1 22 HELIX 3 AA3 SER A 38 GLY A 68 1 31 HELIX 4 AA4 GLY A 68 PHE A 73 1 6 HELIX 5 AA5 SER A 75 ALA A 88 1 14 HELIX 6 AA6 ARG A 103 VAL A 107 5 5 HELIX 7 AA7 MET A 108 ILE A 114 1 7 HELIX 8 AA8 ILE A 114 LEU A 128 1 15 HELIX 9 AA9 VAL A 131 GLY A 154 1 24 HELIX 10 AB1 PHE A 157 GLY A 162 1 6 HELIX 11 AB2 ASP A 163 THR A 176 1 14 HELIX 12 AB3 ILE A 184 HIS A 192 1 9 HELIX 13 AB4 ALA A 195 GLY A 235 1 41 HELIX 14 AB5 PRO A 240 ARG A 268 1 29 HELIX 15 AB6 HIS B 0 GLU B 10 1 11 HELIX 16 AB7 SER B 11 LEU B 32 1 22 HELIX 17 AB8 SER B 38 GLY B 68 1 31 HELIX 18 AB9 GLY B 68 PHE B 73 1 6 HELIX 19 AC1 SER B 75 LEU B 89 1 15 HELIX 20 AC2 ARG B 100 VAL B 107 5 8 HELIX 21 AC3 MET B 108 ILE B 114 1 7 HELIX 22 AC4 ILE B 114 ALA B 127 1 14 HELIX 23 AC5 ALA B 127 GLY B 154 1 28 HELIX 24 AC6 PHE B 157 GLY B 162 1 6 HELIX 25 AC7 ASP B 163 THR B 176 1 14 HELIX 26 AC8 ILE B 184 HIS B 192 1 9 HELIX 27 AC9 ALA B 195 GLY B 235 1 41 HELIX 28 AD1 PRO B 240 HIS B 247 1 8 HELIX 29 AD2 HIS B 247 ARG B 268 1 22 LINK NA NA A 303 O HOH A 407 1555 1555 2.95 LINK NA NA A 303 O HOH A 407 1555 3555 2.95 SITE 1 AC1 1 NA A 302 SITE 1 AC2 1 NA A 301 SITE 1 AC3 1 HOH A 407 SITE 1 AC4 9 GLU A 159 SER A 165 LYS A 166 TYR A 169 SITE 2 AC4 9 THR A 170 ARG A 186 PRO A 193 ASN A 194 SITE 3 AC4 9 TRP A 196 SITE 1 AC5 8 PHE A 102 MET A 148 TYR A 153 HIS A 192 SITE 2 AC5 8 PRO A 193 ASN A 194 ALA A 195 PHE A 198 SITE 1 AC6 2 MET A 204 THR A 207 SITE 1 AC7 8 ASP A 220 ILE A 224 THR A 225 LYS A 226 SITE 2 AC7 8 GLU A 227 GLU A 229 PRO A 240 SER A 242 SITE 1 AC8 1 NA B 302 SITE 1 AC9 2 NA B 301 NA B 303 SITE 1 AD1 1 NA B 302 SITE 1 AD2 5 SER B 165 LEU B 168 ASN B 194 TRP B 196 SITE 2 AD2 5 HOH B 405 SITE 1 AD3 5 PHE B 102 TYR B 153 HIS B 192 PRO B 193 SITE 2 AD3 5 ASN B 194 SITE 1 AD4 2 MET B 175 MET B 204 SITE 1 AD5 10 PRO B 129 GLY B 130 ASP B 220 ALA B 223 SITE 2 AD5 10 ILE B 224 LYS B 226 GLU B 227 PRO B 240 SITE 3 AD5 10 SER B 242 CTX B 308 SITE 1 AD6 7 GLY B 130 VAL B 131 ASP B 220 MET B 222 SITE 2 AD6 7 LYS B 226 LEU B 245 CTX B 307 CRYST1 107.956 107.956 212.224 90.00 90.00 90.00 P 4 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009263 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009263 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004712 0.00000