HEADER DNA BINDING PROTEIN 27-SEP-19 6SY6 TITLE TETR IN COMPLEX WITH THE TETR-BINDING RNA-APTAMER K2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TETRACYCLINE REPRESSOR PROTEIN CLASS B FROM TRANSPOSON COMPND 3 TN10; COMPND 4 CHAIN: B, A; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: RNA (36-MER); COMPND 8 CHAIN: D; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: TETR; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 MOL_ID: 2; SOURCE 8 SYNTHETIC: YES; SOURCE 9 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 10 ORGANISM_TAXID: 562 KEYWDS TETR, TRANSCRIPTION REGULATOR, APTAMER, RNA, DNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR F.C.GRAU,Y.A.MULLER,B.SUESS,F.GROHER,J.JAEGER REVDAT 4 24-JAN-24 6SY6 1 REMARK REVDAT 3 08-APR-20 6SY6 1 JRNL REVDAT 2 26-FEB-20 6SY6 1 JRNL REVDAT 1 05-FEB-20 6SY6 0 JRNL AUTH F.C.GRAU,J.JAEGER,F.GROHER,B.SUESS,Y.A.MULLER JRNL TITL THE COMPLEX FORMED BETWEEN A SYNTHETIC RNA APTAMER AND THE JRNL TITL 2 TRANSCRIPTION REPRESSOR TETR IS A STRUCTURAL AND FUNCTIONAL JRNL TITL 3 TWIN OF THE OPERATOR DNA-TETR REGULATOR COMPLEX. JRNL REF NUCLEIC ACIDS RES. V. 48 3366 2020 JRNL REFN ESSN 1362-4962 JRNL PMID 32052019 JRNL DOI 10.1093/NAR/GKAA083 REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.13_2998 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 16.11 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 14675 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.250 REMARK 3 R VALUE (WORKING SET) : 0.248 REMARK 3 FREE R VALUE : 0.288 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.040 REMARK 3 FREE R VALUE TEST SET COUNT : 739 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 16.1100 - 4.9200 1.00 2889 159 0.2070 0.2453 REMARK 3 2 4.9200 - 3.9200 1.00 2802 146 0.2157 0.2694 REMARK 3 3 3.9200 - 3.4300 1.00 2746 145 0.2505 0.2919 REMARK 3 4 3.4300 - 3.1200 1.00 2758 146 0.3229 0.3408 REMARK 3 5 3.1200 - 2.9000 1.00 2741 143 0.3913 0.4506 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.651 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 33.897 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 68.05 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 75.31 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 3781 REMARK 3 ANGLE : 0.697 5285 REMARK 3 CHIRALITY : 0.034 622 REMARK 3 PLANARITY : 0.004 544 REMARK 3 DIHEDRAL : 12.986 2164 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 20 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 96 THROUGH 106 ) REMARK 3 ORIGIN FOR THE GROUP (A): 46.9462 2.3536 0.4523 REMARK 3 T TENSOR REMARK 3 T11: 0.7381 T22: 0.5553 REMARK 3 T33: 0.5127 T12: -0.0731 REMARK 3 T13: -0.1401 T23: 0.0090 REMARK 3 L TENSOR REMARK 3 L11: 4.0375 L22: 4.3675 REMARK 3 L33: 4.3492 L12: 3.5141 REMARK 3 L13: 2.5898 L23: 3.9201 REMARK 3 S TENSOR REMARK 3 S11: -0.4041 S12: 0.0049 S13: -0.5678 REMARK 3 S21: 0.8965 S22: -0.2636 S23: 0.7528 REMARK 3 S31: -0.1880 S32: 0.9177 S33: -0.1497 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 107 THROUGH 126 ) REMARK 3 ORIGIN FOR THE GROUP (A): 37.6191 18.4859 5.5815 REMARK 3 T TENSOR REMARK 3 T11: 0.7530 T22: 0.4877 REMARK 3 T33: 0.7027 T12: -0.0991 REMARK 3 T13: 0.1164 T23: 0.1011 REMARK 3 L TENSOR REMARK 3 L11: 5.0883 L22: 2.2829 REMARK 3 L33: 5.9081 L12: -0.1241 REMARK 3 L13: -0.3468 L23: -1.5149 REMARK 3 S TENSOR REMARK 3 S11: -0.0581 S12: 0.3403 S13: 1.7506 REMARK 3 S21: 0.1331 S22: 0.0055 S23: -1.2104 REMARK 3 S31: -1.3953 S32: 0.4110 S33: -0.0342 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 127 THROUGH 152 ) REMARK 3 ORIGIN FOR THE GROUP (A): 34.4220 2.1159 0.6936 REMARK 3 T TENSOR REMARK 3 T11: 0.5570 T22: 0.4667 REMARK 3 T33: 0.9980 T12: -0.0920 REMARK 3 T13: -0.0340 T23: -0.0283 REMARK 3 L TENSOR REMARK 3 L11: 2.7694 L22: 2.8595 REMARK 3 L33: 2.7733 L12: -0.7792 REMARK 3 L13: -0.9095 L23: 1.2907 REMARK 3 S TENSOR REMARK 3 S11: -0.1179 S12: -0.3059 S13: 0.3440 REMARK 3 S21: 0.1096 S22: 0.0920 S23: -0.6077 REMARK 3 S31: 0.1592 S32: 0.1593 S33: 0.2029 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 153 THROUGH 182 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.8749 -12.0702 -13.7044 REMARK 3 T TENSOR REMARK 3 T11: 1.2902 T22: 0.7886 REMARK 3 T33: 0.6241 T12: -0.0764 REMARK 3 T13: -0.3010 T23: 0.0384 REMARK 3 L TENSOR REMARK 3 L11: 1.3596 L22: 2.7244 REMARK 3 L33: 0.3232 L12: 0.8039 REMARK 3 L13: -0.5194 L23: -0.9493 REMARK 3 S TENSOR REMARK 3 S11: -0.3320 S12: 0.1572 S13: 0.6227 REMARK 3 S21: 0.6888 S22: 0.5246 S23: 0.0242 REMARK 3 S31: 1.3708 S32: 0.5146 S33: -0.2130 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 183 THROUGH 203 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.0277 7.8330 -1.2990 REMARK 3 T TENSOR REMARK 3 T11: 0.5592 T22: 0.6387 REMARK 3 T33: 0.9928 T12: -0.0060 REMARK 3 T13: -0.1249 T23: -0.0382 REMARK 3 L TENSOR REMARK 3 L11: 3.1799 L22: 3.9499 REMARK 3 L33: 3.6315 L12: 0.2417 REMARK 3 L13: -1.8988 L23: 1.5329 REMARK 3 S TENSOR REMARK 3 S11: -0.2892 S12: -0.0094 S13: -0.2253 REMARK 3 S21: -0.3546 S22: -0.5923 S23: 1.6403 REMARK 3 S31: 0.1190 S32: -1.2185 S33: 0.5934 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 2 THROUGH 6 ) REMARK 3 ORIGIN FOR THE GROUP (A): 65.6651 -37.0093 -11.0209 REMARK 3 T TENSOR REMARK 3 T11: 1.4348 T22: 1.0115 REMARK 3 T33: 1.0585 T12: 0.1978 REMARK 3 T13: -0.1806 T23: -0.1586 REMARK 3 L TENSOR REMARK 3 L11: 0.1887 L22: 0.0026 REMARK 3 L33: 0.0679 L12: 0.1274 REMARK 3 L13: -0.1910 L23: -0.0696 REMARK 3 S TENSOR REMARK 3 S11: 0.4279 S12: 0.9381 S13: -0.3807 REMARK 3 S21: -1.1006 S22: -0.2742 S23: -0.0567 REMARK 3 S31: 1.6618 S32: 0.8044 S33: -0.0668 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 7 THROUGH 11 ) REMARK 3 ORIGIN FOR THE GROUP (A): 62.7768 -27.0265 0.3525 REMARK 3 T TENSOR REMARK 3 T11: 0.7188 T22: 0.6196 REMARK 3 T33: 1.1181 T12: -0.0553 REMARK 3 T13: -0.1179 T23: 0.0375 REMARK 3 L TENSOR REMARK 3 L11: 1.6316 L22: 4.0686 REMARK 3 L33: 3.1609 L12: 0.9682 REMARK 3 L13: 1.3244 L23: 0.7190 REMARK 3 S TENSOR REMARK 3 S11: 0.5945 S12: -0.1938 S13: -0.0890 REMARK 3 S21: -0.2522 S22: -0.8426 S23: 0.4093 REMARK 3 S31: 0.2495 S32: 0.0711 S33: -0.0585 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 12 THROUGH 16 ) REMARK 3 ORIGIN FOR THE GROUP (A): 65.3960 -9.5262 -0.7207 REMARK 3 T TENSOR REMARK 3 T11: 0.7761 T22: 0.6036 REMARK 3 T33: 1.0929 T12: -0.0969 REMARK 3 T13: -0.0417 T23: -0.0533 REMARK 3 L TENSOR REMARK 3 L11: 1.1069 L22: 1.3299 REMARK 3 L33: 0.6275 L12: 0.8737 REMARK 3 L13: -0.7158 L23: -0.9786 REMARK 3 S TENSOR REMARK 3 S11: -0.1655 S12: 0.0661 S13: 1.1043 REMARK 3 S21: 0.5845 S22: 0.5394 S23: 0.7439 REMARK 3 S31: 0.2526 S32: 0.3904 S33: -0.0607 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 17 THROUGH 31 ) REMARK 3 ORIGIN FOR THE GROUP (A): 70.6134 -17.5104 -10.9392 REMARK 3 T TENSOR REMARK 3 T11: 0.6887 T22: 0.7256 REMARK 3 T33: 0.7665 T12: -0.0553 REMARK 3 T13: 0.0527 T23: 0.0246 REMARK 3 L TENSOR REMARK 3 L11: 0.7584 L22: 2.1959 REMARK 3 L33: 0.3262 L12: -1.2709 REMARK 3 L13: -0.7096 L23: -1.1354 REMARK 3 S TENSOR REMARK 3 S11: 0.1902 S12: 0.1608 S13: -0.4357 REMARK 3 S21: -0.3689 S22: -0.4503 S23: -0.0722 REMARK 3 S31: 0.2498 S32: 0.2670 S33: 0.3082 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 32 THROUGH 36 ) REMARK 3 ORIGIN FOR THE GROUP (A): 72.2106 -28.7267 -5.7990 REMARK 3 T TENSOR REMARK 3 T11: 0.6240 T22: 0.5671 REMARK 3 T33: 0.7282 T12: -0.1014 REMARK 3 T13: 0.0229 T23: 0.0352 REMARK 3 L TENSOR REMARK 3 L11: 5.1017 L22: 0.8534 REMARK 3 L33: 5.1723 L12: 0.9604 REMARK 3 L13: 1.1681 L23: -1.3907 REMARK 3 S TENSOR REMARK 3 S11: 1.0188 S12: 0.1231 S13: 0.0447 REMARK 3 S21: 0.4296 S22: -0.4505 S23: 0.5950 REMARK 3 S31: 0.2193 S32: 0.5862 S33: -0.1238 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 37 THROUGH 37 ) REMARK 3 ORIGIN FOR THE GROUP (A): 73.9145 -41.4453 -9.3824 REMARK 3 T TENSOR REMARK 3 T11: 1.1520 T22: 1.2771 REMARK 3 T33: 1.8217 T12: 0.3737 REMARK 3 T13: -0.0781 T23: 0.4905 REMARK 3 L TENSOR REMARK 3 L11: 0.3963 L22: 2.8530 REMARK 3 L33: 2.2330 L12: -1.0612 REMARK 3 L13: 0.8815 L23: -2.2317 REMARK 3 S TENSOR REMARK 3 S11: 1.2005 S12: 0.2168 S13: 0.8143 REMARK 3 S21: 0.4923 S22: 1.5163 S23: 1.4014 REMARK 3 S31: -0.7300 S32: -1.4875 S33: -0.9283 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 3 THROUGH 26 ) REMARK 3 ORIGIN FOR THE GROUP (A): 46.4661 -23.3853 11.5443 REMARK 3 T TENSOR REMARK 3 T11: 0.7323 T22: 0.5793 REMARK 3 T33: 0.7597 T12: -0.0511 REMARK 3 T13: -0.0506 T23: -0.0110 REMARK 3 L TENSOR REMARK 3 L11: 5.6291 L22: 2.6537 REMARK 3 L33: 2.0209 L12: 0.4196 REMARK 3 L13: 0.7928 L23: -0.7955 REMARK 3 S TENSOR REMARK 3 S11: -0.4956 S12: -0.6145 S13: 0.7879 REMARK 3 S21: 0.4426 S22: 0.5719 S23: -0.9903 REMARK 3 S31: -0.6994 S32: 0.1833 S33: 0.1972 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 27 THROUGH 74 ) REMARK 3 ORIGIN FOR THE GROUP (A): 40.0769 -23.4110 6.9118 REMARK 3 T TENSOR REMARK 3 T11: 0.6386 T22: 0.4542 REMARK 3 T33: 0.6618 T12: -0.1957 REMARK 3 T13: -0.1369 T23: 0.0064 REMARK 3 L TENSOR REMARK 3 L11: 6.5686 L22: 3.4640 REMARK 3 L33: 1.3276 L12: -2.7947 REMARK 3 L13: -1.2083 L23: -0.3399 REMARK 3 S TENSOR REMARK 3 S11: 0.4101 S12: -0.7125 S13: -0.4572 REMARK 3 S21: 0.0077 S22: -0.2623 S23: 0.1531 REMARK 3 S31: 0.0631 S32: 0.1304 S33: 0.0040 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 75 THROUGH 100 ) REMARK 3 ORIGIN FOR THE GROUP (A): 30.0793 -9.2159 8.8400 REMARK 3 T TENSOR REMARK 3 T11: 0.6136 T22: 0.6259 REMARK 3 T33: 0.2004 T12: -0.1909 REMARK 3 T13: 0.0104 T23: -0.1031 REMARK 3 L TENSOR REMARK 3 L11: 5.0721 L22: 3.1968 REMARK 3 L33: 2.4285 L12: -1.0608 REMARK 3 L13: 0.0647 L23: -2.3142 REMARK 3 S TENSOR REMARK 3 S11: 0.4226 S12: -0.0225 S13: 0.7823 REMARK 3 S21: 0.4561 S22: -0.1076 S23: -0.4555 REMARK 3 S31: 0.3991 S32: -0.3972 S33: -0.0832 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 101 THROUGH 203 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.9517 -5.7191 2.0690 REMARK 3 T TENSOR REMARK 3 T11: 0.4932 T22: 0.4139 REMARK 3 T33: 0.7056 T12: -0.0967 REMARK 3 T13: 0.0201 T23: 0.1067 REMARK 3 L TENSOR REMARK 3 L11: 5.4304 L22: 4.3097 REMARK 3 L33: 1.8262 L12: 2.4296 REMARK 3 L13: 0.8450 L23: 0.6480 REMARK 3 S TENSOR REMARK 3 S11: 0.0626 S12: -0.3975 S13: 0.2887 REMARK 3 S21: -0.1150 S22: 0.1431 S23: 0.5893 REMARK 3 S31: 0.0471 S32: -0.2149 S33: -0.1422 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 3 THROUGH 24 ) REMARK 3 ORIGIN FOR THE GROUP (A): 56.9641 0.8123 -13.1235 REMARK 3 T TENSOR REMARK 3 T11: 0.6140 T22: 0.5324 REMARK 3 T33: 0.3133 T12: -0.0493 REMARK 3 T13: -0.0373 T23: 0.0876 REMARK 3 L TENSOR REMARK 3 L11: 3.2400 L22: 3.0313 REMARK 3 L33: 2.4530 L12: 0.9731 REMARK 3 L13: -1.2769 L23: -0.9243 REMARK 3 S TENSOR REMARK 3 S11: -0.0889 S12: 0.2058 S13: -0.4892 REMARK 3 S21: 0.4094 S22: 0.2361 S23: -0.3581 REMARK 3 S31: -0.0296 S32: -0.1358 S33: 0.1266 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 25 THROUGH 34 ) REMARK 3 ORIGIN FOR THE GROUP (A): 62.0305 -5.1882 -11.8016 REMARK 3 T TENSOR REMARK 3 T11: 0.6049 T22: 0.3896 REMARK 3 T33: 1.0445 T12: -0.1122 REMARK 3 T13: -0.0160 T23: 0.0202 REMARK 3 L TENSOR REMARK 3 L11: 2.8981 L22: 3.2226 REMARK 3 L33: 6.7769 L12: 0.2088 REMARK 3 L13: -2.4840 L23: -2.0335 REMARK 3 S TENSOR REMARK 3 S11: -0.5332 S12: -0.6617 S13: -1.3952 REMARK 3 S21: -0.8357 S22: -1.1468 S23: -0.6370 REMARK 3 S31: -0.1134 S32: 0.5191 S33: 0.7920 REMARK 3 TLS GROUP : 18 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 35 THROUGH 47 ) REMARK 3 ORIGIN FOR THE GROUP (A): 68.1908 0.5948 -6.5184 REMARK 3 T TENSOR REMARK 3 T11: 0.7041 T22: 0.3686 REMARK 3 T33: 0.5363 T12: -0.3639 REMARK 3 T13: 0.0763 T23: 0.2047 REMARK 3 L TENSOR REMARK 3 L11: 6.7251 L22: 1.2225 REMARK 3 L33: 5.1689 L12: -1.3517 REMARK 3 L13: 2.4776 L23: 1.3980 REMARK 3 S TENSOR REMARK 3 S11: -1.0662 S12: -0.8848 S13: 2.0025 REMARK 3 S21: -0.1463 S22: 0.3977 S23: 0.3942 REMARK 3 S31: 0.2744 S32: 0.2323 S33: 0.6617 REMARK 3 TLS GROUP : 19 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 48 THROUGH 63 ) REMARK 3 ORIGIN FOR THE GROUP (A): 51.4189 5.2331 -5.9732 REMARK 3 T TENSOR REMARK 3 T11: 0.7033 T22: 0.5833 REMARK 3 T33: 0.1237 T12: -0.0781 REMARK 3 T13: 0.0899 T23: -0.0212 REMARK 3 L TENSOR REMARK 3 L11: 2.2320 L22: 3.5187 REMARK 3 L33: 0.0077 L12: -1.6479 REMARK 3 L13: -0.1043 L23: -0.4536 REMARK 3 S TENSOR REMARK 3 S11: 0.2457 S12: 0.2224 S13: 0.6049 REMARK 3 S21: 0.3707 S22: -0.1342 S23: 0.4528 REMARK 3 S31: -0.9106 S32: -0.0018 S33: 0.4352 REMARK 3 TLS GROUP : 20 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 64 THROUGH 95 ) REMARK 3 ORIGIN FOR THE GROUP (A): 35.5127 11.7355 -6.8234 REMARK 3 T TENSOR REMARK 3 T11: 0.5126 T22: 0.4717 REMARK 3 T33: 0.6380 T12: -0.0851 REMARK 3 T13: -0.0089 T23: 0.0902 REMARK 3 L TENSOR REMARK 3 L11: 4.4765 L22: 4.5206 REMARK 3 L33: 4.3205 L12: 0.1236 REMARK 3 L13: -2.0303 L23: 0.8720 REMARK 3 S TENSOR REMARK 3 S11: 0.6289 S12: 0.0476 S13: 1.3366 REMARK 3 S21: -0.7615 S22: 0.3447 S23: -0.5060 REMARK 3 S31: -0.2648 S32: -0.1660 S33: -0.8067 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (CHAIN 'A' AND (RESID 4 THROUGH 5 OR REMARK 3 RESID 7 THROUGH 41 OR RESID 43 THROUGH 45 REMARK 3 OR RESID 47 THROUGH 70 OR RESID 72 REMARK 3 THROUGH 103 OR RESID 105 THROUGH 106 OR REMARK 3 RESID 108 THROUGH 146 OR RESID 148 REMARK 3 THROUGH 150 OR RESID 152 THROUGH 154 OR REMARK 3 RESID 181 THROUGH 203)) REMARK 3 SELECTION : (CHAIN 'B' AND (RESID 4 THROUGH 5 OR REMARK 3 RESID 7 THROUGH 41 OR RESID 43 THROUGH 45 REMARK 3 OR RESID 47 THROUGH 70 OR RESID 72 REMARK 3 THROUGH 103 OR RESID 105 THROUGH 106 OR REMARK 3 RESID 108 THROUGH 146 OR RESID 148 REMARK 3 THROUGH 150 OR RESID 152 THROUGH 154 OR REMARK 3 RESID 181 THROUGH 203)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6SY6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 27-SEP-19. REMARK 100 THE DEPOSITION ID IS D_1292104543. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-MAY-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9184 REMARK 200 MONOCHROMATOR : KMC-2 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14683 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 16.110 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 20.30 REMARK 200 R MERGE (I) : 0.81420 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 4.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 21.40 REMARK 200 R MERGE FOR SHELL (I) : 5.66200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.470 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2NS7 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15 % (V/V) PENTAERYTHRITOL PROPOXYLATE REMARK 280 (5/4 PO/OH), 0.2 M NACL, PH 6.0, 0.1 M MES-NAOH, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 39.99033 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 79.98067 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 79.98067 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 39.99033 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4840 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23510 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -34.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 GLU B 156 REMARK 465 GLU B 157 REMARK 465 ARG B 158 REMARK 465 GLU B 159 REMARK 465 THR B 160 REMARK 465 PRO B 161 REMARK 465 THR B 162 REMARK 465 THR B 163 REMARK 465 ASP B 164 REMARK 465 SER B 165 REMARK 465 MET B 166 REMARK 465 PRO B 167 REMARK 465 PRO B 168 REMARK 465 LEU B 169 REMARK 465 LEU B 170 REMARK 465 ARG B 171 REMARK 465 GLN B 172 REMARK 465 ALA B 173 REMARK 465 ILE B 174 REMARK 465 GLU B 175 REMARK 465 LEU B 176 REMARK 465 PHE B 177 REMARK 465 ASP B 178 REMARK 465 HIS B 179 REMARK 465 GLN B 180 REMARK 465 LEU B 204 REMARK 465 LEU B 205 REMARK 465 GLN B 206 REMARK 465 ILE B 207 REMARK 465 VAL B 208 REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 LYS A 155 REMARK 465 GLU A 156 REMARK 465 GLU A 157 REMARK 465 ARG A 158 REMARK 465 GLU A 159 REMARK 465 THR A 160 REMARK 465 PRO A 161 REMARK 465 THR A 162 REMARK 465 THR A 163 REMARK 465 ASP A 164 REMARK 465 SER A 165 REMARK 465 MET A 166 REMARK 465 PRO A 167 REMARK 465 PRO A 168 REMARK 465 LEU A 169 REMARK 465 ASP A 178 REMARK 465 HIS A 179 REMARK 465 GLN A 180 REMARK 465 LEU A 204 REMARK 465 LEU A 205 REMARK 465 GLN A 206 REMARK 465 ILE A 207 REMARK 465 VAL A 208 REMARK 465 G D 1 REMARK 465 U D 38 REMARK 465 C D 39 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR B 202 84.42 -66.05 REMARK 500 HIS A 151 35.57 -95.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6SY4 RELATED DB: PDB REMARK 900 6SY4 CONTAINS THE SAME PROTEIN COMPLEXED WITH THE TETR-BINDING REMARK 900 APTAMER K1 DBREF 6SY6 B 1 203 UNP P04483 TETR2_ECOLX 1 203 DBREF 6SY6 A 1 203 UNP P04483 TETR2_ECOLX 1 203 DBREF 6SY6 D 1 39 PDB 6SY6 6SY6 1 39 SEQADV 6SY6 SER B 68 UNP P04483 CYS 68 CONFLICT SEQADV 6SY6 ASN B 88 UNP P04483 CYS 88 CONFLICT SEQADV 6SY6 THR B 121 UNP P04483 CYS 121 CONFLICT SEQADV 6SY6 SER B 144 UNP P04483 CYS 144 CONFLICT SEQADV 6SY6 HIS B 188 UNP P04483 PHE 188 CONFLICT SEQADV 6SY6 SER B 192 UNP P04483 LEU 192 CONFLICT SEQADV 6SY6 LEU B 193 UNP P04483 ILE 193 CONFLICT SEQADV 6SY6 ARG B 195 UNP P04483 CYS 195 CONFLICT SEQADV 6SY6 PHE B 197 UNP P04483 LEU 197 CONFLICT SEQADV 6SY6 VAL B 199 UNP P04483 LYS 199 CONFLICT SEQADV 6SY6 THR B 202 UNP P04483 LYS 202 CONFLICT SEQADV 6SY6 ALA B 203 UNP P04483 CYS 203 CONFLICT SEQADV 6SY6 LEU B 204 UNP P04483 EXPRESSION TAG SEQADV 6SY6 LEU B 205 UNP P04483 EXPRESSION TAG SEQADV 6SY6 GLN B 206 UNP P04483 EXPRESSION TAG SEQADV 6SY6 ILE B 207 UNP P04483 EXPRESSION TAG SEQADV 6SY6 VAL B 208 UNP P04483 EXPRESSION TAG SEQADV 6SY6 SER A 68 UNP P04483 CYS 68 CONFLICT SEQADV 6SY6 ASN A 88 UNP P04483 CYS 88 CONFLICT SEQADV 6SY6 THR A 121 UNP P04483 CYS 121 CONFLICT SEQADV 6SY6 SER A 144 UNP P04483 CYS 144 CONFLICT SEQADV 6SY6 HIS A 188 UNP P04483 PHE 188 CONFLICT SEQADV 6SY6 SER A 192 UNP P04483 LEU 192 CONFLICT SEQADV 6SY6 LEU A 193 UNP P04483 ILE 193 CONFLICT SEQADV 6SY6 ARG A 195 UNP P04483 CYS 195 CONFLICT SEQADV 6SY6 PHE A 197 UNP P04483 LEU 197 CONFLICT SEQADV 6SY6 VAL A 199 UNP P04483 LYS 199 CONFLICT SEQADV 6SY6 THR A 202 UNP P04483 LYS 202 CONFLICT SEQADV 6SY6 ALA A 203 UNP P04483 CYS 203 CONFLICT SEQADV 6SY6 LEU A 204 UNP P04483 EXPRESSION TAG SEQADV 6SY6 LEU A 205 UNP P04483 EXPRESSION TAG SEQADV 6SY6 GLN A 206 UNP P04483 EXPRESSION TAG SEQADV 6SY6 ILE A 207 UNP P04483 EXPRESSION TAG SEQADV 6SY6 VAL A 208 UNP P04483 EXPRESSION TAG SEQRES 1 B 208 MET SER ARG LEU ASP LYS SER LYS VAL ILE ASN SER ALA SEQRES 2 B 208 LEU GLU LEU LEU ASN GLU VAL GLY ILE GLU GLY LEU THR SEQRES 3 B 208 THR ARG LYS LEU ALA GLN LYS LEU GLY VAL GLU GLN PRO SEQRES 4 B 208 THR LEU TYR TRP HIS VAL LYS ASN LYS ARG ALA LEU LEU SEQRES 5 B 208 ASP ALA LEU ALA ILE GLU MET LEU ASP ARG HIS HIS THR SEQRES 6 B 208 HIS PHE SER PRO LEU GLU GLY GLU SER TRP GLN ASP PHE SEQRES 7 B 208 LEU ARG ASN ASN ALA LYS SER PHE ARG ASN ALA LEU LEU SEQRES 8 B 208 SER HIS ARG ASP GLY ALA LYS VAL HIS LEU GLY THR ARG SEQRES 9 B 208 PRO THR GLU LYS GLN TYR GLU THR LEU GLU ASN GLN LEU SEQRES 10 B 208 ALA PHE LEU THR GLN GLN GLY PHE SER LEU GLU ASN ALA SEQRES 11 B 208 LEU TYR ALA LEU SER ALA VAL GLY HIS PHE THR LEU GLY SEQRES 12 B 208 SER VAL LEU GLU ASP GLN GLU HIS GLN VAL ALA LYS GLU SEQRES 13 B 208 GLU ARG GLU THR PRO THR THR ASP SER MET PRO PRO LEU SEQRES 14 B 208 LEU ARG GLN ALA ILE GLU LEU PHE ASP HIS GLN GLY ALA SEQRES 15 B 208 GLU PRO ALA PHE LEU HIS GLY LEU GLU SER LEU ILE ARG SEQRES 16 B 208 GLY PHE GLU VAL GLN LEU THR ALA LEU LEU GLN ILE VAL SEQRES 1 A 208 MET SER ARG LEU ASP LYS SER LYS VAL ILE ASN SER ALA SEQRES 2 A 208 LEU GLU LEU LEU ASN GLU VAL GLY ILE GLU GLY LEU THR SEQRES 3 A 208 THR ARG LYS LEU ALA GLN LYS LEU GLY VAL GLU GLN PRO SEQRES 4 A 208 THR LEU TYR TRP HIS VAL LYS ASN LYS ARG ALA LEU LEU SEQRES 5 A 208 ASP ALA LEU ALA ILE GLU MET LEU ASP ARG HIS HIS THR SEQRES 6 A 208 HIS PHE SER PRO LEU GLU GLY GLU SER TRP GLN ASP PHE SEQRES 7 A 208 LEU ARG ASN ASN ALA LYS SER PHE ARG ASN ALA LEU LEU SEQRES 8 A 208 SER HIS ARG ASP GLY ALA LYS VAL HIS LEU GLY THR ARG SEQRES 9 A 208 PRO THR GLU LYS GLN TYR GLU THR LEU GLU ASN GLN LEU SEQRES 10 A 208 ALA PHE LEU THR GLN GLN GLY PHE SER LEU GLU ASN ALA SEQRES 11 A 208 LEU TYR ALA LEU SER ALA VAL GLY HIS PHE THR LEU GLY SEQRES 12 A 208 SER VAL LEU GLU ASP GLN GLU HIS GLN VAL ALA LYS GLU SEQRES 13 A 208 GLU ARG GLU THR PRO THR THR ASP SER MET PRO PRO LEU SEQRES 14 A 208 LEU ARG GLN ALA ILE GLU LEU PHE ASP HIS GLN GLY ALA SEQRES 15 A 208 GLU PRO ALA PHE LEU HIS GLY LEU GLU SER LEU ILE ARG SEQRES 16 A 208 GLY PHE GLU VAL GLN LEU THR ALA LEU LEU GLN ILE VAL SEQRES 1 D 39 G G C G G A G A A U G U U SEQRES 2 D 39 A U G G C C U U C G G G C SEQRES 3 D 39 A G A G A A A A C C G U C HELIX 1 AA1 ASP B 5 GLY B 21 1 17 HELIX 2 AA2 THR B 26 GLY B 35 1 10 HELIX 3 AA3 GLU B 37 TYR B 42 1 6 HELIX 4 AA4 ASN B 47 HIS B 64 1 18 HELIX 5 AA5 SER B 74 LEU B 91 1 18 HELIX 6 AA6 ASP B 95 LEU B 101 1 7 HELIX 7 AA7 THR B 106 GLN B 123 1 18 HELIX 8 AA8 SER B 126 GLN B 152 1 27 HELIX 9 AA9 ALA B 182 THR B 202 1 21 HELIX 10 AB1 ASP A 5 GLY A 21 1 17 HELIX 11 AB2 THR A 26 GLY A 35 1 10 HELIX 12 AB3 GLU A 37 TRP A 43 1 7 HELIX 13 AB4 ASN A 47 HIS A 64 1 18 HELIX 14 AB5 SER A 74 LEU A 91 1 18 HELIX 15 AB6 ASP A 95 LEU A 101 1 7 HELIX 16 AB7 THR A 106 GLN A 123 1 18 HELIX 17 AB8 SER A 126 HIS A 151 1 26 HELIX 18 AB9 ARG A 171 LEU A 176 1 6 HELIX 19 AC1 ALA A 182 THR A 202 1 21 CRYST1 96.564 96.564 119.971 90.00 90.00 120.00 P 31 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010356 0.005979 0.000000 0.00000 SCALE2 0.000000 0.011958 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008335 0.00000