HEADER CELL ADHESION 02-OCT-19 6SZC TITLE NMR STRUCTURE OF REPEAT DOMAIN 13 OF THE FIBRILLAR ADHESIN CSHA FROM TITLE 2 STREPTOCOCCUS GORDONII. COMPND MOL_ID: 1; COMPND 2 MOLECULE: SURFACE-ASSOCIATED PROTEIN CSHA; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: SAMPLE SEQUENCE INCLUDES N-TERMINAL HIS-TAG AND COMPND 6 DISORDERED N-TERMINAL OF THE POLYPEPTIDE. SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS GORDONII (STRAIN CHALLIS / ATCC SOURCE 3 35105 / BCRC 15272 / CH1 / DL1 / V288); SOURCE 4 ORGANISM_TAXID: 467705; SOURCE 5 STRAIN: CHALLIS / ATCC 35105 / BCRC 15272 / CH1 / DL1 / V288; SOURCE 6 GENE: CSHA, SGO_0854; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: POPINF KEYWDS ADHESIN, FIBRIL, NOVEL, REPEAT DOMAIN, STREPTOCOCCUS, CELL ADHESION EXPDTA SOLUTION NMR NUMMDL 15 AUTHOR V.A.HIGMAN,C.BACK,M.P.CRUMP,P.RACE REVDAT 5 19-JUN-24 6SZC 1 REMARK REVDAT 4 14-JUN-23 6SZC 1 REMARK REVDAT 3 30-MAR-22 6SZC 1 REMARK REVDAT 2 20-MAY-20 6SZC 1 JRNL REVDAT 1 08-APR-20 6SZC 0 JRNL AUTH C.R.BACK,V.A.HIGMAN,K.LE VAY,V.V.PATEL,A.E.PARNELL, JRNL AUTH 2 D.FRANKEL,H.F.JENKINSON,S.G.BURSTON,M.P.CRUMP,A.H.NOBBS, JRNL AUTH 3 P.R.RACE JRNL TITL THE STREPTOCOCCAL MULTIDOMAIN FIBRILLAR ADHESIN CSHA HAS AN JRNL TITL 2 ELONGATED POLYMERIC ARCHITECTURE. JRNL REF J.BIOL.CHEM. V. 295 6689 2020 JRNL REFN ESSN 1083-351X JRNL PMID 32229583 JRNL DOI 10.1074/JBC.RA119.011719 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : ARIA REMARK 3 AUTHORS : LINGE, O'DONOGHUE AND NILGES REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: STANDARD ARIA CALCULATION AND WATER REMARK 3 REFINEMENT PROTOCOL REMARK 4 REMARK 4 6SZC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 02-OCT-19. REMARK 100 THE DEPOSITION ID IS D_1292103448. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293 REMARK 210 PH : 7.5 REMARK 210 IONIC STRENGTH : 70 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 20 MG/ML [U-15N] CSHA_RD13, 50 REMARK 210 MM SODIUM CHLORIDE, 20 MM REMARK 210 POTASSIUM PHOSPHATE, 90% H2O/10% REMARK 210 D2O; 20 MG/ML [U-15N] CSHA_RD13, REMARK 210 50 MM SODIUM CHLORIDE, 20 MM REMARK 210 POTASSIUM PHOSPHATE, 100% D2O; REMARK 210 20 MG/ML [U-13C; U-15N] CSHA_ REMARK 210 RD13, 50 MM SODIUM CHLORIDE, 20 REMARK 210 MM POTASSIUM PHOSPHATE, 90% H2O/ REMARK 210 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D HNCACB; 3D REMARK 210 CBCA(CO)NH; 3D HNHA; 3D HN(CO)CA; REMARK 210 3D HNCO; HN(CA)CO; 3D C(CO)NH; REMARK 210 3D HCCH-TOCSY; 15N TOCSY-HSQC; REMARK 210 15N NOESY-HSQC; 13C NOESY-HSQC; REMARK 210 13C NOESY-HSQC AROMATIC; 2D 1H- REMARK 210 1H TOCSY; 2D 1H-1H NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 900 MHZ REMARK 210 SPECTROMETER MODEL : VNMRS; INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CCPNMR ANALYSIS REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 15 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 4830 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-15 REMARK 465 RES C SSSEQI REMARK 465 MET A 2013 REMARK 465 ALA A 2014 REMARK 465 HIS A 2015 REMARK 465 HIS A 2016 REMARK 465 HIS A 2017 REMARK 465 HIS A 2018 REMARK 465 HIS A 2019 REMARK 465 HIS A 2020 REMARK 465 SER A 2021 REMARK 465 SER A 2022 REMARK 465 GLY A 2023 REMARK 465 LEU A 2024 REMARK 465 GLU A 2025 REMARK 465 VAL A 2026 REMARK 465 LEU A 2027 REMARK 465 PHE A 2028 REMARK 465 GLN A 2029 REMARK 465 GLY A 2030 REMARK 465 PRO A 2031 REMARK 465 THR A 2032 REMARK 465 GLY A 2033 REMARK 465 THR A 2034 REMARK 465 GLY A 2035 REMARK 465 ALA A 2036 REMARK 465 THR A 2037 REMARK 465 SER A 2038 REMARK 465 THR A 2039 REMARK 465 GLY A 2040 REMARK 465 PRO A 2041 REMARK 465 GLN A 2042 REMARK 465 GLY A 2043 REMARK 465 LEU A 2044 REMARK 465 PRO A 2045 REMARK 465 GLN A 2046 REMARK 465 THR A 2047 REMARK 465 GLY A 2048 REMARK 465 THR A 2049 REMARK 465 PRO A 2050 REMARK 465 THR A 2051 REMARK 465 PHE A 2052 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP A 2062 HG1 THR A 2064 1.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PRO A2079 108.69 -47.27 REMARK 500 1 PRO A2088 -4.08 -56.99 REMARK 500 1 PRO A2106 102.68 -56.34 REMARK 500 1 PRO A2125 -6.09 -58.50 REMARK 500 1 THR A2128 -81.11 -117.82 REMARK 500 2 LYS A2129 40.49 -178.24 REMARK 500 3 PRO A2079 107.86 -51.73 REMARK 500 3 ASP A2113 -169.13 -110.01 REMARK 500 3 LYS A2129 -165.27 -126.64 REMARK 500 4 PRO A2079 109.67 -47.14 REMARK 500 4 PRO A2088 0.01 -62.18 REMARK 500 4 VAL A2107 119.87 -160.66 REMARK 500 4 PRO A2125 52.11 -69.17 REMARK 500 4 THR A2128 -168.57 -75.57 REMARK 500 5 PRO A2079 109.99 -51.36 REMARK 500 5 PRO A2088 0.52 -61.99 REMARK 500 5 LYS A2103 83.49 60.45 REMARK 500 5 PRO A2106 95.85 -64.10 REMARK 500 5 THR A2128 -149.82 50.29 REMARK 500 5 LYS A2129 -172.94 74.13 REMARK 500 6 PRO A2079 109.48 -52.29 REMARK 500 6 PRO A2088 -6.27 -55.76 REMARK 500 6 PHE A2127 -94.62 63.51 REMARK 500 7 PRO A2079 108.66 -41.91 REMARK 500 7 PRO A2088 -6.42 -59.04 REMARK 500 7 GLN A2099 -52.55 -120.64 REMARK 500 7 PRO A2125 21.13 -75.13 REMARK 500 7 THR A2128 -81.08 -103.59 REMARK 500 7 LYS A2129 -176.40 178.16 REMARK 500 8 PRO A2088 -1.28 -60.00 REMARK 500 8 ASP A2097 48.31 -72.46 REMARK 500 8 THR A2128 -73.71 -135.22 REMARK 500 9 PRO A2079 108.90 -53.76 REMARK 500 9 PRO A2088 -3.90 -58.94 REMARK 500 9 PHE A2100 72.20 65.10 REMARK 500 9 LYS A2103 72.56 55.87 REMARK 500 9 GLU A2126 87.53 58.70 REMARK 500 9 LYS A2129 47.55 -84.67 REMARK 500 10 PRO A2060 119.71 -38.66 REMARK 500 10 PRO A2079 109.52 -47.84 REMARK 500 10 THR A2128 144.46 70.55 REMARK 500 11 PRO A2088 0.69 -62.38 REMARK 500 11 LYS A2103 159.33 68.69 REMARK 500 11 PRO A2125 97.93 -55.86 REMARK 500 11 GLU A2126 -56.03 -161.59 REMARK 500 11 THR A2128 -56.74 74.53 REMARK 500 12 PRO A2088 0.17 -61.67 REMARK 500 12 GLU A2126 -145.92 -124.63 REMARK 500 12 PHE A2127 83.36 59.52 REMARK 500 13 PRO A2079 108.97 -51.04 REMARK 500 REMARK 500 THIS ENTRY HAS 57 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 34439 RELATED DB: BMRB REMARK 900 NMR STRUCTURE OF REPEAT DOMAIN 13 OF THE FIBRILLAR ADHESIN CSHA REMARK 900 FROM STREPTOCOCCUS GORDONII. DBREF 6SZC A 2031 2130 UNP A8AWJ3 A8AWJ3_STRGC 2031 2130 SEQADV 6SZC MET A 2013 UNP A8AWJ3 INITIATING METHIONINE SEQADV 6SZC ALA A 2014 UNP A8AWJ3 EXPRESSION TAG SEQADV 6SZC HIS A 2015 UNP A8AWJ3 EXPRESSION TAG SEQADV 6SZC HIS A 2016 UNP A8AWJ3 EXPRESSION TAG SEQADV 6SZC HIS A 2017 UNP A8AWJ3 EXPRESSION TAG SEQADV 6SZC HIS A 2018 UNP A8AWJ3 EXPRESSION TAG SEQADV 6SZC HIS A 2019 UNP A8AWJ3 EXPRESSION TAG SEQADV 6SZC HIS A 2020 UNP A8AWJ3 EXPRESSION TAG SEQADV 6SZC SER A 2021 UNP A8AWJ3 EXPRESSION TAG SEQADV 6SZC SER A 2022 UNP A8AWJ3 EXPRESSION TAG SEQADV 6SZC GLY A 2023 UNP A8AWJ3 EXPRESSION TAG SEQADV 6SZC LEU A 2024 UNP A8AWJ3 EXPRESSION TAG SEQADV 6SZC GLU A 2025 UNP A8AWJ3 EXPRESSION TAG SEQADV 6SZC VAL A 2026 UNP A8AWJ3 EXPRESSION TAG SEQADV 6SZC LEU A 2027 UNP A8AWJ3 EXPRESSION TAG SEQADV 6SZC PHE A 2028 UNP A8AWJ3 EXPRESSION TAG SEQADV 6SZC GLN A 2029 UNP A8AWJ3 EXPRESSION TAG SEQADV 6SZC GLY A 2030 UNP A8AWJ3 EXPRESSION TAG SEQRES 1 A 118 MET ALA HIS HIS HIS HIS HIS HIS SER SER GLY LEU GLU SEQRES 2 A 118 VAL LEU PHE GLN GLY PRO THR GLY THR GLY ALA THR SER SEQRES 3 A 118 THR GLY PRO GLN GLY LEU PRO GLN THR GLY THR PRO THR SEQRES 4 A 118 PHE GLN GLY GLY ASP PRO LEU VAL PRO ILE ASP GLU THR SEQRES 5 A 118 VAL GLU PRO THR PHE GLU ASP GLY SER LYS GLU LYS THR SEQRES 6 A 118 ILE PRO GLY GLN GLY THR TYR THR ILE VAL PRO ASP GLY SEQRES 7 A 118 THR VAL THR PHE THR PRO ASP LYS GLN PHE VAL GLY LYS SEQRES 8 A 118 PRO ASP PRO VAL THR VAL LYS ARG VAL ASP LYS ASN GLY SEQRES 9 A 118 THR PRO VAL THR ALA THR TYR SER PRO GLU PHE THR LYS SEQRES 10 A 118 VAL SHEET 1 AA1 3 PRO A2067 PHE A2069 0 SHEET 2 AA1 3 VAL A2107 VAL A2112 -1 O LYS A2110 N THR A2068 SHEET 3 AA1 3 PRO A2118 TYR A2123 -1 O TYR A2123 N VAL A2107 SHEET 1 AA2 3 GLU A2075 ILE A2078 0 SHEET 2 AA2 3 GLY A2082 VAL A2087 -1 O GLY A2082 N ILE A2078 SHEET 3 AA2 3 THR A2091 PRO A2096 -1 O THR A2093 N THR A2085 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1