HEADER BLOOD CLOTTING 02-OCT-19 6SZW TITLE ASYMMETRIC COMPLEX OF FACTOR XII AND KININOGEN WITH GC1QR/C1QBP/P32 IS TITLE 2 GOVERNED BY ALLOSTERY COMPND MOL_ID: 1; COMPND 2 MOLECULE: COMPLEMENT COMPONENT 1 Q SUBCOMPONENT-BINDING PROTEIN, COMPND 3 MITOCHONDRIAL; COMPND 4 CHAIN: A, B, C; COMPND 5 SYNONYM: ASF/SF2-ASSOCIATED PROTEIN P32,GLYCOPROTEIN GC1QBP,C1QBP, COMPND 6 HYALURONAN-BINDING PROTEIN 1,MITOCHONDRIAL MATRIX PROTEIN P32,GC1Q-R COMPND 7 PROTEIN,P33,SF2AP32; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: COAGULATION FACTOR XII; COMPND 11 CHAIN: D; COMPND 12 SYNONYM: HAGEMAN FACTOR,HAF; COMPND 13 EC: 3.4.21.38; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: C1QBP, GC1QBP, HABP1, SF2P32; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: F12; SOURCE 13 EXPRESSION_SYSTEM: DROSOPHILA MELANOGASTER; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 7227 KEYWDS CONTACT ACTIVATION, BLOOD CLOTTING EXPDTA X-RAY DIFFRACTION AUTHOR B.G.KAIRA,J.EMSLEY REVDAT 3 24-JAN-24 6SZW 1 REMARK REVDAT 2 14-OCT-20 6SZW 1 JRNL LINK REVDAT 1 22-JUL-20 6SZW 0 JRNL AUTH B.G.KAIRA,A.SLATER,K.R.MCCRAE,I.DREVENY,U.SUMYA,N.J.MUTCH, JRNL AUTH 2 M.SEARLE,J.EMSLEY JRNL TITL FACTOR XII AND KININOGEN ASYMMETRIC ASSEMBLY WITH JRNL TITL 2 GC1QR/C1QBP/P32 IS GOVERNED BY ALLOSTERY. JRNL REF BLOOD V. 136 1685 2020 JRNL REFN ESSN 1528-0020 JRNL PMID 32559765 JRNL DOI 10.1182/BLOOD.2020004818 REMARK 2 REMARK 2 RESOLUTION. 3.14 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0155 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.14 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 90.99 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 13647 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.251 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 725 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.14 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.22 REMARK 3 REFLECTION IN BIN (WORKING SET) : 988 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.71 REMARK 3 BIN R VALUE (WORKING SET) : 0.3050 REMARK 3 BIN FREE R VALUE SET COUNT : 50 REMARK 3 BIN FREE R VALUE : 0.3430 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4725 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 3 REMARK 3 SOLVENT ATOMS : 11 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 76.67 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.11000 REMARK 3 B22 (A**2) : -2.99000 REMARK 3 B33 (A**2) : 4.45000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -6.41000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.472 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.432 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 25.916 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.936 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.866 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4817 ; 0.011 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4442 ; 0.006 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6513 ; 1.463 ; 1.946 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10271 ; 0.950 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 578 ; 6.043 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 246 ;36.325 ;25.691 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 850 ;20.552 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 15 ;19.703 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 727 ; 0.079 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5415 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1072 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 3 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 74 282 B 74 282 10318 0.120 0.050 REMARK 3 2 A 74 282 C 74 282 10004 0.130 0.050 REMARK 3 3 B 74 282 C 74 282 10058 0.130 0.050 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 6SZW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 03-OCT-19. REMARK 100 THE DEPOSITION ID IS D_1292104621. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-JUN-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : L REMARK 200 WAVELENGTH OR RANGE (A) : 0.69 - 2.07 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14379 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.140 REMARK 200 RESOLUTION RANGE LOW (A) : 90.990 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 3.100 REMARK 200 R MERGE (I) : 0.10900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.14 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.36 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: LAUE REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1P32 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.31 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.58 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM CACODYLATE, 0.1 M CALCIUM REMARK 280 ACETATE, 12% (W/V) PEG 8000, PH 5.5, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 283.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z+1/2 REMARK 290 4555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 32.72549 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.78000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 54.21028 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 32.72549 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 35.78000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 54.21028 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8350 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29940 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -123.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO A 140 REMARK 465 PRO A 141 REMARK 465 THR A 142 REMARK 465 PHE A 143 REMARK 465 ASP A 144 REMARK 465 GLY A 145 REMARK 465 GLU A 146 REMARK 465 GLU A 147 REMARK 465 GLU A 148 REMARK 465 PRO A 149 REMARK 465 SER A 150 REMARK 465 GLN A 151 REMARK 465 GLY A 152 REMARK 465 GLN A 153 REMARK 465 LYS A 154 REMARK 465 VAL A 155 REMARK 465 GLU A 156 REMARK 465 GLU A 157 REMARK 465 GLN A 158 REMARK 465 GLU A 159 REMARK 465 PRO A 160 REMARK 465 GLU A 161 REMARK 465 ASP A 191 REMARK 465 GLU A 192 REMARK 465 VAL A 193 REMARK 465 GLY A 194 REMARK 465 GLN A 195 REMARK 465 GLU A 196 REMARK 465 ASP A 197 REMARK 465 GLU A 198 REMARK 465 ALA A 199 REMARK 465 GLU A 200 REMARK 465 SER A 201 REMARK 465 PRO B 140 REMARK 465 PRO B 141 REMARK 465 THR B 142 REMARK 465 PHE B 143 REMARK 465 ASP B 144 REMARK 465 GLY B 145 REMARK 465 GLU B 146 REMARK 465 GLU B 147 REMARK 465 GLU B 148 REMARK 465 PRO B 149 REMARK 465 SER B 150 REMARK 465 GLN B 151 REMARK 465 GLY B 152 REMARK 465 GLN B 153 REMARK 465 LYS B 154 REMARK 465 VAL B 155 REMARK 465 GLU B 156 REMARK 465 GLU B 157 REMARK 465 GLN B 158 REMARK 465 GLU B 159 REMARK 465 PRO B 160 REMARK 465 GLU B 161 REMARK 465 LEU B 162 REMARK 465 GLU B 190 REMARK 465 ASP B 191 REMARK 465 GLU B 192 REMARK 465 VAL B 193 REMARK 465 GLY B 194 REMARK 465 GLN B 195 REMARK 465 GLU B 196 REMARK 465 ASP B 197 REMARK 465 GLU B 198 REMARK 465 ALA B 199 REMARK 465 GLU B 200 REMARK 465 SER B 201 REMARK 465 HIS C 99 REMARK 465 PRO C 140 REMARK 465 PRO C 141 REMARK 465 THR C 142 REMARK 465 PHE C 143 REMARK 465 ASP C 144 REMARK 465 GLY C 145 REMARK 465 GLU C 146 REMARK 465 GLU C 147 REMARK 465 GLU C 148 REMARK 465 PRO C 149 REMARK 465 SER C 150 REMARK 465 GLN C 151 REMARK 465 GLY C 152 REMARK 465 GLN C 153 REMARK 465 LYS C 154 REMARK 465 VAL C 155 REMARK 465 GLU C 156 REMARK 465 GLU C 157 REMARK 465 GLN C 158 REMARK 465 GLU C 159 REMARK 465 PRO C 160 REMARK 465 GLU C 161 REMARK 465 ILE D 1 REMARK 465 PRO D 2 REMARK 465 PRO D 3 REMARK 465 TRP D 4 REMARK 465 GLU D 5 REMARK 465 ALA D 6 REMARK 465 PRO D 7 REMARK 465 LYS D 8 REMARK 465 GLU D 9 REMARK 465 HIS D 10 REMARK 465 LYS D 11 REMARK 465 TYR D 12 REMARK 465 LYS D 13 REMARK 465 ALA D 14 REMARK 465 GLU D 15 REMARK 465 GLU D 16 REMARK 465 HIS D 17 REMARK 465 THR D 18 REMARK 465 GLU D 71 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS C 98 CG CD CE NZ REMARK 470 LYS C 100 CG CD CE NZ REMARK 470 LEU C 162 CG CD1 CD2 REMARK 470 GLU C 218 CG CD OE1 OE2 REMARK 470 TRP C 219 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP C 219 CZ3 CH2 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLU C 218 CB REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 100 118.63 -26.79 REMARK 500 THR A 101 75.55 52.45 REMARK 500 LEU A 102 160.97 -43.27 REMARK 500 VAL A 124 -164.99 -126.77 REMARK 500 ALA A 125 90.39 -61.83 REMARK 500 THR A 165 79.58 -110.65 REMARK 500 GLU A 218 -107.53 31.37 REMARK 500 TRP A 219 68.52 38.01 REMARK 500 LYS B 98 -76.79 -73.84 REMARK 500 HIS B 99 75.48 -105.66 REMARK 500 VAL B 124 -159.86 -132.70 REMARK 500 ALA B 125 87.99 -61.69 REMARK 500 THR B 165 77.94 -111.01 REMARK 500 VAL B 248 75.42 -103.44 REMARK 500 VAL C 124 -166.28 -125.53 REMARK 500 ALA C 125 89.64 -65.01 REMARK 500 THR C 165 78.13 -110.43 REMARK 500 PRO C 189 93.95 -68.14 REMARK 500 ASP C 191 84.22 -57.48 REMARK 500 GLN C 195 52.22 -94.89 REMARK 500 GLU C 198 -3.31 54.03 REMARK 500 GLU C 216 73.18 -26.23 REMARK 500 SER C 230 55.92 82.68 REMARK 500 VAL C 248 77.79 -104.75 REMARK 500 CYS D 42 151.19 -40.11 REMARK 500 PRO D 50 4.79 -62.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 403 DISTANCE = 7.07 ANGSTROMS REMARK 525 HOH B 404 DISTANCE = 8.94 ANGSTROMS REMARK 525 HOH C 406 DISTANCE = 7.34 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 185 OD2 REMARK 620 2 HIS A 187 NE2 94.0 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 185 OD2 REMARK 620 2 HIS B 187 NE2 92.7 REMARK 620 3 HOH B 401 O 85.0 100.6 REMARK 620 4 HOH B 402 O 110.1 128.8 125.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP C 185 OD2 REMARK 620 2 HIS C 187 NE2 109.7 REMARK 620 3 HOH C 402 O 88.6 128.6 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN C 301 DBREF 6SZW A 75 282 UNP Q07021 C1QBP_HUMAN 75 282 DBREF 6SZW B 75 282 UNP Q07021 C1QBP_HUMAN 75 282 DBREF 6SZW C 75 282 UNP Q07021 C1QBP_HUMAN 75 282 DBREF 6SZW D 1 71 UNP P00748 FA12_HUMAN 20 90 SEQADV 6SZW MET A 74 UNP Q07021 INITIATING METHIONINE SEQADV 6SZW MET B 74 UNP Q07021 INITIATING METHIONINE SEQADV 6SZW MET C 74 UNP Q07021 INITIATING METHIONINE SEQRES 1 A 209 MET HIS THR ASP GLY ASP LYS ALA PHE VAL ASP PHE LEU SEQRES 2 A 209 SER ASP GLU ILE LYS GLU GLU ARG LYS ILE GLN LYS HIS SEQRES 3 A 209 LYS THR LEU PRO LYS MET SER GLY GLY TRP GLU LEU GLU SEQRES 4 A 209 LEU ASN GLY THR GLU ALA LYS LEU VAL ARG LYS VAL ALA SEQRES 5 A 209 GLY GLU LYS ILE THR VAL THR PHE ASN ILE ASN ASN SER SEQRES 6 A 209 ILE PRO PRO THR PHE ASP GLY GLU GLU GLU PRO SER GLN SEQRES 7 A 209 GLY GLN LYS VAL GLU GLU GLN GLU PRO GLU LEU THR SER SEQRES 8 A 209 THR PRO ASN PHE VAL VAL GLU VAL ILE LYS ASN ASP ASP SEQRES 9 A 209 GLY LYS LYS ALA LEU VAL LEU ASP CYS HIS TYR PRO GLU SEQRES 10 A 209 ASP GLU VAL GLY GLN GLU ASP GLU ALA GLU SER ASP ILE SEQRES 11 A 209 PHE SER ILE ARG GLU VAL SER PHE GLN SER THR GLY GLU SEQRES 12 A 209 SER GLU TRP LYS ASP THR ASN TYR THR LEU ASN THR ASP SEQRES 13 A 209 SER LEU ASP TRP ALA LEU TYR ASP HIS LEU MET ASP PHE SEQRES 14 A 209 LEU ALA ASP ARG GLY VAL ASP ASN THR PHE ALA ASP GLU SEQRES 15 A 209 LEU VAL GLU LEU SER THR ALA LEU GLU HIS GLN GLU TYR SEQRES 16 A 209 ILE THR PHE LEU GLU ASP LEU LYS SER PHE VAL LYS SER SEQRES 17 A 209 GLN SEQRES 1 B 209 MET HIS THR ASP GLY ASP LYS ALA PHE VAL ASP PHE LEU SEQRES 2 B 209 SER ASP GLU ILE LYS GLU GLU ARG LYS ILE GLN LYS HIS SEQRES 3 B 209 LYS THR LEU PRO LYS MET SER GLY GLY TRP GLU LEU GLU SEQRES 4 B 209 LEU ASN GLY THR GLU ALA LYS LEU VAL ARG LYS VAL ALA SEQRES 5 B 209 GLY GLU LYS ILE THR VAL THR PHE ASN ILE ASN ASN SER SEQRES 6 B 209 ILE PRO PRO THR PHE ASP GLY GLU GLU GLU PRO SER GLN SEQRES 7 B 209 GLY GLN LYS VAL GLU GLU GLN GLU PRO GLU LEU THR SER SEQRES 8 B 209 THR PRO ASN PHE VAL VAL GLU VAL ILE LYS ASN ASP ASP SEQRES 9 B 209 GLY LYS LYS ALA LEU VAL LEU ASP CYS HIS TYR PRO GLU SEQRES 10 B 209 ASP GLU VAL GLY GLN GLU ASP GLU ALA GLU SER ASP ILE SEQRES 11 B 209 PHE SER ILE ARG GLU VAL SER PHE GLN SER THR GLY GLU SEQRES 12 B 209 SER GLU TRP LYS ASP THR ASN TYR THR LEU ASN THR ASP SEQRES 13 B 209 SER LEU ASP TRP ALA LEU TYR ASP HIS LEU MET ASP PHE SEQRES 14 B 209 LEU ALA ASP ARG GLY VAL ASP ASN THR PHE ALA ASP GLU SEQRES 15 B 209 LEU VAL GLU LEU SER THR ALA LEU GLU HIS GLN GLU TYR SEQRES 16 B 209 ILE THR PHE LEU GLU ASP LEU LYS SER PHE VAL LYS SER SEQRES 17 B 209 GLN SEQRES 1 C 209 MET HIS THR ASP GLY ASP LYS ALA PHE VAL ASP PHE LEU SEQRES 2 C 209 SER ASP GLU ILE LYS GLU GLU ARG LYS ILE GLN LYS HIS SEQRES 3 C 209 LYS THR LEU PRO LYS MET SER GLY GLY TRP GLU LEU GLU SEQRES 4 C 209 LEU ASN GLY THR GLU ALA LYS LEU VAL ARG LYS VAL ALA SEQRES 5 C 209 GLY GLU LYS ILE THR VAL THR PHE ASN ILE ASN ASN SER SEQRES 6 C 209 ILE PRO PRO THR PHE ASP GLY GLU GLU GLU PRO SER GLN SEQRES 7 C 209 GLY GLN LYS VAL GLU GLU GLN GLU PRO GLU LEU THR SER SEQRES 8 C 209 THR PRO ASN PHE VAL VAL GLU VAL ILE LYS ASN ASP ASP SEQRES 9 C 209 GLY LYS LYS ALA LEU VAL LEU ASP CYS HIS TYR PRO GLU SEQRES 10 C 209 ASP GLU VAL GLY GLN GLU ASP GLU ALA GLU SER ASP ILE SEQRES 11 C 209 PHE SER ILE ARG GLU VAL SER PHE GLN SER THR GLY GLU SEQRES 12 C 209 SER GLU TRP LYS ASP THR ASN TYR THR LEU ASN THR ASP SEQRES 13 C 209 SER LEU ASP TRP ALA LEU TYR ASP HIS LEU MET ASP PHE SEQRES 14 C 209 LEU ALA ASP ARG GLY VAL ASP ASN THR PHE ALA ASP GLU SEQRES 15 C 209 LEU VAL GLU LEU SER THR ALA LEU GLU HIS GLN GLU TYR SEQRES 16 C 209 ILE THR PHE LEU GLU ASP LEU LYS SER PHE VAL LYS SER SEQRES 17 C 209 GLN SEQRES 1 D 71 ILE PRO PRO TRP GLU ALA PRO LYS GLU HIS LYS TYR LYS SEQRES 2 D 71 ALA GLU GLU HIS THR VAL VAL LEU THR VAL THR GLY GLU SEQRES 3 D 71 PRO CYS HIS PHE PRO PHE GLN TYR HIS ARG GLN LEU TYR SEQRES 4 D 71 HIS LYS CYS THR HIS LYS GLY ARG PRO GLY PRO GLN PRO SEQRES 5 D 71 TRP CYS ALA THR THR PRO ASN PHE ASP GLN ASP GLN ARG SEQRES 6 D 71 TRP GLY TYR CYS LEU GLU HET ZN A 301 1 HET ZN B 301 1 HET ZN C 301 1 HETNAM ZN ZINC ION FORMUL 5 ZN 3(ZN 2+) FORMUL 8 HOH *11(H2 O) HELIX 1 AA1 THR A 76 GLN A 97 1 22 HELIX 2 AA2 ASP A 176 GLY A 178 5 3 HELIX 3 AA3 ASP A 232 ARG A 246 1 15 HELIX 4 AA4 ASP A 249 SER A 281 1 33 HELIX 5 AA5 THR B 76 GLN B 97 1 22 HELIX 6 AA6 ASP B 232 ARG B 246 1 15 HELIX 7 AA7 ASP B 249 SER B 281 1 33 HELIX 8 AA8 THR C 76 LYS C 98 1 23 HELIX 9 AA9 ASP C 232 ARG C 246 1 15 HELIX 10 AB1 ASP C 249 SER C 281 1 33 HELIX 11 AB2 THR D 22 GLU D 26 5 5 HELIX 12 AB3 ASN D 59 GLN D 64 1 6 SHEET 1 AA1 7 GLU A 110 ASN A 114 0 SHEET 2 AA1 7 GLU A 117 VAL A 124 -1 O LYS A 119 N GLU A 112 SHEET 3 AA1 7 GLU A 127 ASN A 134 -1 O VAL A 131 N LEU A 120 SHEET 4 AA1 7 PHE A 168 LYS A 174 -1 O GLU A 171 N THR A 130 SHEET 5 AA1 7 LYS A 180 HIS A 187 -1 O LEU A 182 N VAL A 172 SHEET 6 AA1 7 SER A 205 SER A 213 -1 O ARG A 207 N ASP A 185 SHEET 7 AA1 7 THR A 225 ASN A 227 -1 O LEU A 226 N VAL A 209 SHEET 1 AA2 7 GLU B 110 ASN B 114 0 SHEET 2 AA2 7 GLU B 117 LYS B 123 -1 O LYS B 119 N GLU B 112 SHEET 3 AA2 7 GLU B 127 ASN B 134 -1 O VAL B 131 N LEU B 120 SHEET 4 AA2 7 PHE B 168 LYS B 174 -1 O GLU B 171 N THR B 130 SHEET 5 AA2 7 LYS B 180 HIS B 187 -1 O LEU B 182 N VAL B 172 SHEET 6 AA2 7 SER B 205 SER B 213 -1 O ARG B 207 N ASP B 185 SHEET 7 AA2 7 THR B 225 ASN B 227 -1 O LEU B 226 N VAL B 209 SHEET 1 AA3 7 GLU C 110 ASN C 114 0 SHEET 2 AA3 7 GLU C 117 LYS C 123 -1 O LYS C 119 N GLU C 112 SHEET 3 AA3 7 GLU C 127 ASN C 134 -1 O VAL C 131 N LEU C 120 SHEET 4 AA3 7 PHE C 168 LYS C 174 -1 O GLU C 171 N THR C 130 SHEET 5 AA3 7 LYS C 180 HIS C 187 -1 O LEU C 182 N VAL C 172 SHEET 6 AA3 7 SER C 205 SER C 213 -1 O ARG C 207 N ASP C 185 SHEET 7 AA3 7 THR C 225 ASN C 227 -1 O LEU C 226 N VAL C 209 SHEET 1 AA4 3 ALA C 199 SER C 201 0 SHEET 2 AA4 3 GLN D 37 TYR D 39 -1 O LEU D 38 N GLU C 200 SHEET 3 AA4 3 PHE D 32 TYR D 34 -1 N PHE D 32 O TYR D 39 SHEET 1 AA5 2 TRP D 53 CYS D 54 0 SHEET 2 AA5 2 GLY D 67 TYR D 68 -1 O GLY D 67 N CYS D 54 SSBOND 1 CYS D 28 CYS D 54 1555 1555 2.03 SSBOND 2 CYS D 42 CYS D 69 1555 1555 2.04 LINK OD2 ASP A 185 ZN ZN A 301 1555 1555 2.05 LINK NE2 HIS A 187 ZN ZN A 301 1555 1555 2.20 LINK OD2 ASP B 185 ZN ZN B 301 1555 1555 2.04 LINK NE2 HIS B 187 ZN ZN B 301 1555 1555 2.28 LINK ZN ZN B 301 O HOH B 401 1555 1555 2.40 LINK ZN ZN B 301 O HOH B 402 1555 1555 2.69 LINK OD2 ASP C 185 ZN ZN C 301 1555 1555 2.00 LINK NE2 HIS C 187 ZN ZN C 301 1555 1555 2.11 LINK ZN ZN C 301 O HOH C 402 1555 1555 2.40 CISPEP 1 PHE D 30 PRO D 31 0 -5.03 SITE 1 AC1 2 ASP A 185 HIS A 187 SITE 1 AC2 4 ASP B 185 HIS B 187 HOH B 401 HOH B 402 SITE 1 AC3 4 ASP C 185 HIS C 187 HOH C 402 HOH C 404 CRYST1 106.290 71.560 115.857 90.00 110.64 90.00 I 1 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009408 0.000000 0.003543 0.00000 SCALE2 0.000000 0.013974 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009223 0.00000