HEADER OXIDOREDUCTASE 03-OCT-19 6T0L TITLE CRYSTAL STRUCTURE OF CYP124 IN COMPLEX WITH INHIBITOR COMPOUND 5' COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYP124 IN COMPLEX WITH INHIBITOR COMPOUND 5'; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS H37RV; SOURCE 3 ORGANISM_TAXID: 83332; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CYTOCHROME, P450, CYP, CYP124, 124, OXIDOREDUCTASE, INHIBITION, KEYWDS 2 INHIBITOR, DRUG, ANTITUBERCULOSIS, TUBERCULOSIS, MYCOBACTERIUM KEYWDS 3 TUBERCULOSIS, COMPOUND, 5' EXPDTA X-RAY DIFFRACTION AUTHOR S.BUKHDRUKER,E.MARIN,T.VARAKSA,A.GILEP,N.STRUSHKEVICH,V.BORSHCHEVSKIY REVDAT 5 24-JAN-24 6T0L 1 REMARK REVDAT 4 17-FEB-21 6T0L 1 JRNL SITE ATOM REVDAT 3 03-FEB-21 6T0L 1 JRNL REVDAT 2 13-JAN-21 6T0L 1 JRNL REVDAT 1 14-OCT-20 6T0L 0 JRNL AUTH T.VARAKSA,S.BUKHDRUKER,I.GRABOVEC,E.MARIN,A.KAVALEUSKI, JRNL AUTH 2 A.GUSACH,K.KOVALEV,I.MASLOV,A.LUGININA,D.ZABELSKII, JRNL AUTH 3 R.ASTASHKIN,M.SHEVTSOV,S.SMOLSKAYA,A.KAVALEUSKAYA, JRNL AUTH 4 P.SHABUNYA,A.BARANOVSKY,V.DOLGOPALETS,Y.CHARNOU,A.SAVACHKA, JRNL AUTH 5 R.LITVINOVSKAYA,A.HURSKI,E.SHEVCHENKO,A.ROGACHEV,A.MISHIN, JRNL AUTH 6 V.GORDELIY,A.GABRIELIAN,D.E.HURT,B.NIKONENKO,K.MAJOROV, JRNL AUTH 7 A.APT,A.ROSENTHAL,A.GILEP,V.BORSHCHEVSKIY,N.STRUSHKEVICH JRNL TITL METABOLIC FATE OF HUMAN IMMUNOACTIVE STEROLS IN JRNL TITL 2 MYCOBACTERIUM TUBERCULOSIS. JRNL REF J.MOL.BIOL. V. 433 66763 2021 JRNL REFN ESSN 1089-8638 JRNL PMID 33359098 JRNL DOI 10.1016/J.JMB.2020.166763 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.16_3549 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.67 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 48050 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.165 REMARK 3 R VALUE (WORKING SET) : 0.163 REMARK 3 FREE R VALUE : 0.192 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2404 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.6700 - 4.6200 1.00 2946 156 0.1618 0.1697 REMARK 3 2 4.6200 - 3.6700 1.00 2784 147 0.1257 0.1416 REMARK 3 3 3.6700 - 3.2100 1.00 2733 143 0.1489 0.1963 REMARK 3 4 3.2100 - 2.9200 1.00 2716 143 0.1601 0.1861 REMARK 3 5 2.9200 - 2.7100 1.00 2699 143 0.1580 0.1769 REMARK 3 6 2.7100 - 2.5500 1.00 2674 140 0.1589 0.2169 REMARK 3 7 2.5500 - 2.4200 1.00 2680 141 0.1663 0.2086 REMARK 3 8 2.4200 - 2.3100 1.00 2656 140 0.1686 0.2250 REMARK 3 9 2.3100 - 2.2200 1.00 2665 140 0.1759 0.2156 REMARK 3 10 2.2200 - 2.1500 1.00 2665 139 0.1733 0.2117 REMARK 3 11 2.1500 - 2.0800 1.00 2644 139 0.1780 0.2256 REMARK 3 12 2.0800 - 2.0200 1.00 2636 138 0.1866 0.2051 REMARK 3 13 2.0200 - 1.9700 1.00 2639 139 0.2060 0.2367 REMARK 3 14 1.9700 - 1.9200 1.00 2644 139 0.2260 0.3029 REMARK 3 15 1.9200 - 1.8800 1.00 2623 140 0.2498 0.2698 REMARK 3 16 1.8800 - 1.8400 0.99 2602 137 0.2725 0.3160 REMARK 3 17 1.8400 - 1.8000 1.00 2640 140 0.2866 0.3037 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.172 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.060 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 28.85 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.58 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 3733 REMARK 3 ANGLE : 1.055 5117 REMARK 3 CHIRALITY : 0.060 542 REMARK 3 PLANARITY : 0.008 682 REMARK 3 DIHEDRAL : 20.701 1375 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 7 THROUGH 105 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.4946 -0.3940 47.4670 REMARK 3 T TENSOR REMARK 3 T11: 0.2974 T22: 0.2939 REMARK 3 T33: 0.2447 T12: -0.0841 REMARK 3 T13: 0.0036 T23: -0.0304 REMARK 3 L TENSOR REMARK 3 L11: 1.6968 L22: 2.1797 REMARK 3 L33: 2.3693 L12: -0.4519 REMARK 3 L13: 0.0002 L23: 0.3287 REMARK 3 S TENSOR REMARK 3 S11: -0.1489 S12: 0.1912 S13: 0.1187 REMARK 3 S21: -0.2192 S22: 0.1775 S23: -0.2368 REMARK 3 S31: -0.2590 S32: 0.2964 S33: -0.0190 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 106 THROUGH 428 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.0111 3.6414 66.0803 REMARK 3 T TENSOR REMARK 3 T11: 0.2177 T22: 0.2160 REMARK 3 T33: 0.2259 T12: -0.0132 REMARK 3 T13: -0.0245 T23: -0.0080 REMARK 3 L TENSOR REMARK 3 L11: 0.6886 L22: 0.9837 REMARK 3 L33: 1.5716 L12: -0.0079 REMARK 3 L13: -0.0306 L23: 0.4958 REMARK 3 S TENSOR REMARK 3 S11: -0.1019 S12: -0.0199 S13: 0.0113 REMARK 3 S21: 0.0644 S22: 0.1367 S23: -0.1061 REMARK 3 S31: -0.1220 S32: 0.2983 S33: -0.0248 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6T0L COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 04-OCT-19. REMARK 100 THE DEPOSITION ID IS D_1292104002. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-OCT-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : MASSIF-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.966 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS 20190315 REMARK 200 DATA SCALING SOFTWARE : XSCALE 20190315 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 60287 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.660 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 11.70 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 7.42 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 30.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.7 REMARK 200 DATA REDUNDANCY IN SHELL : 12.00 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 48.60 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.3 REMARK 200 STARTING MODEL: 6T0F REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.53 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.65 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG 3350, 0.1 M BIS-TRIS, PH 6.5, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 97.80500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 35.78500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 35.78500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 146.70750 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 35.78500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 35.78500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 48.90250 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 35.78500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 35.78500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 146.70750 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 35.78500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 35.78500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 48.90250 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 97.80500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2110 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16900 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -23.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 LEU A 3 REMARK 465 ASN A 4 REMARK 465 THR A 5 REMARK 465 ALA A 6 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 102 CG CD OE1 OE2 REMARK 470 LYS A 132 CG CD CE NZ REMARK 470 ILE A 137 CD1 REMARK 470 GLU A 250 OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 50 65.93 -155.59 REMARK 500 LEU A 167 -61.12 -139.83 REMARK 500 ALA A 206 124.33 -171.56 REMARK 500 ASP A 296 71.51 -154.98 REMARK 500 SER A 313 68.91 33.76 REMARK 500 ASN A 366 73.34 -150.46 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 980 DISTANCE = 5.88 ANGSTROMS REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 PG4 A 503 REMARK 610 PG4 A 505 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 501 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 379 SG REMARK 620 2 HEM A 501 NA 95.7 REMARK 620 3 HEM A 501 NB 86.2 91.6 REMARK 620 4 HEM A 501 NC 84.7 176.7 91.7 REMARK 620 5 HEM A 501 ND 92.8 87.0 178.2 89.7 REMARK 620 6 M8N A 502 N2 171.2 92.2 89.6 87.6 91.6 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEM A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue M8N A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PG4 A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PG4 A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 507 DBREF 6T0L A 1 428 UNP P9WPP3 CP124_MYCTU 1 428 SEQADV 6T0L MET A -6 UNP P9WPP3 INITIATING METHIONINE SEQADV 6T0L HIS A -5 UNP P9WPP3 EXPRESSION TAG SEQADV 6T0L HIS A -4 UNP P9WPP3 EXPRESSION TAG SEQADV 6T0L HIS A -3 UNP P9WPP3 EXPRESSION TAG SEQADV 6T0L HIS A -2 UNP P9WPP3 EXPRESSION TAG SEQADV 6T0L HIS A -1 UNP P9WPP3 EXPRESSION TAG SEQADV 6T0L HIS A 0 UNP P9WPP3 EXPRESSION TAG SEQADV 6T0L THR A 65 UNP P9WPP3 ALA 65 ENGINEERED MUTATION SEQRES 1 A 435 MET HIS HIS HIS HIS HIS HIS MET GLY LEU ASN THR ALA SEQRES 2 A 435 ILE ALA THR ARG VAL ASN GLY THR PRO PRO PRO GLU VAL SEQRES 3 A 435 PRO ILE ALA ASP ILE GLU LEU GLY SER LEU ASP PHE TRP SEQRES 4 A 435 ALA LEU ASP ASP ASP VAL ARG ASP GLY ALA PHE ALA THR SEQRES 5 A 435 LEU ARG ARG GLU ALA PRO ILE SER PHE TRP PRO THR ILE SEQRES 6 A 435 GLU LEU PRO GLY PHE VAL THR GLY ASN GLY HIS TRP ALA SEQRES 7 A 435 LEU THR LYS TYR ASP ASP VAL PHE TYR ALA SER ARG HIS SEQRES 8 A 435 PRO ASP ILE PHE SER SER TYR PRO ASN ILE THR ILE ASN SEQRES 9 A 435 ASP GLN THR PRO GLU LEU ALA GLU TYR PHE GLY SER MET SEQRES 10 A 435 ILE VAL LEU ASP ASP PRO ARG HIS GLN ARG LEU ARG SER SEQRES 11 A 435 ILE VAL SER ARG ALA PHE THR PRO LYS VAL VAL ALA ARG SEQRES 12 A 435 ILE GLU ALA ALA VAL ARG ASP ARG ALA HIS ARG LEU VAL SEQRES 13 A 435 SER SER MET ILE ALA ASN ASN PRO ASP ARG GLN ALA ASP SEQRES 14 A 435 LEU VAL SER GLU LEU ALA GLY PRO LEU PRO LEU GLN ILE SEQRES 15 A 435 ILE CYS ASP MET MET GLY ILE PRO LYS ALA ASP HIS GLN SEQRES 16 A 435 ARG ILE PHE HIS TRP THR ASN VAL ILE LEU GLY PHE GLY SEQRES 17 A 435 ASP PRO ASP LEU ALA THR ASP PHE ASP GLU PHE MET GLN SEQRES 18 A 435 VAL SER ALA ASP ILE GLY ALA TYR ALA THR ALA LEU ALA SEQRES 19 A 435 GLU ASP ARG ARG VAL ASN HIS HIS ASP ASP LEU THR SER SEQRES 20 A 435 SER LEU VAL GLU ALA GLU VAL ASP GLY GLU ARG LEU SER SEQRES 21 A 435 SER ARG GLU ILE ALA SER PHE PHE ILE LEU LEU VAL VAL SEQRES 22 A 435 ALA GLY ASN GLU THR THR ARG ASN ALA ILE THR HIS GLY SEQRES 23 A 435 VAL LEU ALA LEU SER ARG TYR PRO GLU GLN ARG ASP ARG SEQRES 24 A 435 TRP TRP SER ASP PHE ASP GLY LEU ALA PRO THR ALA VAL SEQRES 25 A 435 GLU GLU ILE VAL ARG TRP ALA SER PRO VAL VAL TYR MET SEQRES 26 A 435 ARG ARG THR LEU THR GLN ASP ILE GLU LEU ARG GLY THR SEQRES 27 A 435 LYS MET ALA ALA GLY ASP LYS VAL SER LEU TRP TYR CYS SEQRES 28 A 435 SER ALA ASN ARG ASP GLU SER LYS PHE ALA ASP PRO TRP SEQRES 29 A 435 THR PHE ASP LEU ALA ARG ASN PRO ASN PRO HIS LEU GLY SEQRES 30 A 435 PHE GLY GLY GLY GLY ALA HIS PHE CYS LEU GLY ALA ASN SEQRES 31 A 435 LEU ALA ARG ARG GLU ILE ARG VAL ALA PHE ASP GLU LEU SEQRES 32 A 435 ARG ARG GLN MET PRO ASP VAL VAL ALA THR GLU GLU PRO SEQRES 33 A 435 ALA ARG LEU LEU SER GLN PHE ILE HIS GLY ILE LYS THR SEQRES 34 A 435 LEU PRO VAL THR TRP SER HET HEM A 501 43 HET M8N A 502 16 HET PG4 A 503 9 HET PEG A 504 7 HET PG4 A 505 12 HET GOL A 506 6 HET CL A 507 1 HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM M8N ~{N}-[[[2-METHYL-4-(3-METHYLBUTYL) HETNAM 2 M8N PHENYL]AMINO]METHYL]HYDROXYLAMINE HETNAM PG4 TETRAETHYLENE GLYCOL HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM GOL GLYCEROL HETNAM CL CHLORIDE ION HETSYN HEM HEME HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 HEM C34 H32 FE N4 O4 FORMUL 3 M8N C13 H22 N2 O FORMUL 4 PG4 2(C8 H18 O5) FORMUL 5 PEG C4 H10 O3 FORMUL 7 GOL C3 H8 O3 FORMUL 8 CL CL 1- FORMUL 9 HOH *380(H2 O) HELIX 1 AA1 PRO A 20 ILE A 24 5 5 HELIX 2 AA2 SER A 28 LEU A 34 1 7 HELIX 3 AA3 ASP A 35 ALA A 50 1 16 HELIX 4 AA4 LYS A 74 HIS A 84 1 11 HELIX 5 AA5 SER A 109 LEU A 113 5 5 HELIX 6 AA6 PRO A 116 SER A 126 1 11 HELIX 7 AA7 ARG A 127 PHE A 129 5 3 HELIX 8 AA8 THR A 130 ASN A 156 1 27 HELIX 9 AA9 LEU A 163 LEU A 167 1 5 HELIX 10 AB1 GLY A 169 GLY A 181 1 13 HELIX 11 AB2 PRO A 183 ALA A 185 5 3 HELIX 12 AB3 ASP A 186 PHE A 200 1 15 HELIX 13 AB4 ASP A 208 ASN A 233 1 26 HELIX 14 AB5 ASP A 237 ALA A 245 1 9 HELIX 15 AB6 SER A 253 TYR A 286 1 34 HELIX 16 AB7 TYR A 286 ASP A 296 1 11 HELIX 17 AB8 ASP A 296 SER A 313 1 18 HELIX 18 AB9 TYR A 343 ASN A 347 1 5 HELIX 19 AC1 GLY A 381 MET A 400 1 20 SHEET 1 AA1 5 ILE A 52 TRP A 55 0 SHEET 2 AA1 5 HIS A 69 LEU A 72 -1 O ALA A 71 N SER A 53 SHEET 3 AA1 5 LYS A 338 TRP A 342 1 O SER A 340 N TRP A 70 SHEET 4 AA1 5 TYR A 317 LEU A 322 -1 N ARG A 320 O VAL A 339 SHEET 5 AA1 5 PHE A 88 SER A 89 -1 N SER A 89 O THR A 321 SHEET 1 AA2 3 GLN A 160 ASP A 162 0 SHEET 2 AA2 3 PRO A 424 THR A 426 -1 O VAL A 425 N ALA A 161 SHEET 3 AA2 3 VAL A 404 ALA A 405 -1 N VAL A 404 O THR A 426 SHEET 1 AA3 2 GLU A 246 VAL A 247 0 SHEET 2 AA3 2 GLU A 250 ARG A 251 -1 O GLU A 250 N VAL A 247 SHEET 1 AA4 2 ILE A 326 LEU A 328 0 SHEET 2 AA4 2 THR A 331 MET A 333 -1 O MET A 333 N ILE A 326 SHEET 1 AA5 2 ALA A 410 ARG A 411 0 SHEET 2 AA5 2 ILE A 420 THR A 422 -1 O LYS A 421 N ALA A 410 LINK SG CYS A 379 FE HEM A 501 1555 1555 2.33 LINK FE HEM A 501 N2 M8N A 502 1555 1555 2.03 CISPEP 1 TYR A 91 PRO A 92 0 6.73 CISPEP 2 ASP A 115 PRO A 116 0 6.91 CISPEP 3 ASN A 364 PRO A 365 0 -8.20 SITE 1 AC1 22 ILE A 111 HIS A 118 ARG A 122 LEU A 264 SITE 2 AC1 22 ALA A 267 GLY A 268 THR A 271 ARG A 320 SITE 3 AC1 22 TYR A 343 GLY A 370 PHE A 371 GLY A 372 SITE 4 AC1 22 HIS A 377 CYS A 379 LEU A 380 GLY A 381 SITE 5 AC1 22 ALA A 385 M8N A 502 HOH A 620 HOH A 652 SITE 6 AC1 22 HOH A 685 HOH A 687 SITE 1 AC2 9 ILE A 94 ILE A 111 VAL A 266 ALA A 267 SITE 2 AC2 9 THR A 271 PHE A 416 ILE A 417 HEM A 501 SITE 3 AC2 9 HOH A 608 SITE 1 AC3 6 ALA A 354 ASP A 355 ASP A 360 ALA A 362 SITE 2 AC3 6 ARG A 363 ASN A 364 SITE 1 AC4 3 ASP A 77 ARG A 329 HOH A 688 SITE 1 AC5 9 TRP A 294 LYS A 332 ARG A 397 ARG A 398 SITE 2 AC5 9 HOH A 603 HOH A 639 HOH A 805 HOH A 813 SITE 3 AC5 9 HOH A 947 SITE 1 AC6 7 ARG A 83 GLY A 375 ARG A 398 GLN A 399 SITE 2 AC6 7 PRO A 401 HOH A 626 HOH A 805 SITE 1 AC7 4 PHE A 79 TYR A 80 HIS A 84 ARG A 329 CRYST1 71.570 71.570 195.610 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013972 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013972 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005112 0.00000