HEADER HYDROLASE 10-OCT-19 6T35 TITLE CRYSTAL STRUCTURE OF AMPC FROM E.COLI WITH ENMETAZOBACTAM (AAI-101) COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-LACTAMASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CEPHALOSPORINASE; COMPND 5 EC: 3.5.2.6; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI K-12; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 GENE: AMPC, AMPA, B4150, JW4111; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI STR. K-12 SUBSTR. W3110; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 316407 KEYWDS BETA LACTAMASE, ANTIBIOTIC RESISTANCE, ANTIMICROBIAL PROTEIN, KEYWDS 2 MECHANISM BASED INHIBITOR, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR P.A.LANG,T.M.LEISSING,C.J.SCHOFIELD,J.BREM REVDAT 4 27-MAR-24 6T35 1 COMPND REMARK HETNAM HETSYN REVDAT 4 2 1 FORMUL REVDAT 3 24-JAN-24 6T35 1 REMARK REVDAT 2 11-MAY-22 6T35 1 JRNL REVDAT 1 18-NOV-20 6T35 0 JRNL AUTH P.A.LANG,R.RAJ,A.TUMBER,C.T.LOHANS,P.RABE,C.V.ROBINSON, JRNL AUTH 2 J.BREM,C.J.SCHOFIELD JRNL TITL STUDIES ON ENMETAZOBACTAM CLARIFY MECHANISMS OF WIDELY USED JRNL TITL 2 BETA-LACTAMASE INHIBITORS. JRNL REF PROC.NATL.ACAD.SCI.USA V. 119 10119 2022 JRNL REFN ESSN 1091-6490 JRNL PMID 35486701 JRNL DOI 10.1073/PNAS.2117310119 REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.15.2_3472 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.64 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 45721 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.168 REMARK 3 R VALUE (WORKING SET) : 0.167 REMARK 3 FREE R VALUE : 0.184 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.860 REMARK 3 FREE R VALUE TEST SET COUNT : 2223 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.6390 - 4.4085 1.00 2971 161 0.1694 0.1581 REMARK 3 2 4.4085 - 3.4996 1.00 2821 128 0.1385 0.1610 REMARK 3 3 3.4996 - 3.0574 1.00 2760 141 0.1706 0.2126 REMARK 3 4 3.0574 - 2.7779 1.00 2752 122 0.1722 0.2089 REMARK 3 5 2.7779 - 2.5788 1.00 2722 147 0.1649 0.1894 REMARK 3 6 2.5788 - 2.4268 1.00 2724 123 0.1648 0.1833 REMARK 3 7 2.4268 - 2.3052 1.00 2706 130 0.1551 0.1974 REMARK 3 8 2.3052 - 2.2049 1.00 2678 164 0.1570 0.1708 REMARK 3 9 2.2049 - 2.1200 1.00 2702 117 0.1628 0.1842 REMARK 3 10 2.1200 - 2.0469 1.00 2654 160 0.1753 0.1766 REMARK 3 11 2.0469 - 1.9829 1.00 2684 143 0.1755 0.2109 REMARK 3 12 1.9829 - 1.9262 1.00 2666 140 0.1919 0.1962 REMARK 3 13 1.9262 - 1.8755 1.00 2679 145 0.2128 0.2634 REMARK 3 14 1.8755 - 1.8297 1.00 2630 150 0.2327 0.2505 REMARK 3 15 1.8297 - 1.7881 1.00 2675 131 0.2481 0.2748 REMARK 3 16 1.7881 - 1.7501 1.00 2674 121 0.2964 0.3164 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.400 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.08 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 4 THROUGH 23 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.1911 -0.2191 6.8881 REMARK 3 T TENSOR REMARK 3 T11: 0.3151 T22: 0.2935 REMARK 3 T33: 0.2735 T12: 0.0136 REMARK 3 T13: 0.0226 T23: -0.0113 REMARK 3 L TENSOR REMARK 3 L11: 0.1973 L22: 0.0110 REMARK 3 L33: 0.4316 L12: 0.0631 REMARK 3 L13: -0.1493 L23: -0.0600 REMARK 3 S TENSOR REMARK 3 S11: 0.0931 S12: 0.0421 S13: 0.0038 REMARK 3 S21: -0.0092 S22: -0.1913 S23: -0.1118 REMARK 3 S31: -0.0052 S32: -0.0911 S33: -0.0000 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 24 THROUGH 54 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.0540 1.8725 16.9567 REMARK 3 T TENSOR REMARK 3 T11: 0.3271 T22: 0.3192 REMARK 3 T33: 0.3304 T12: -0.0542 REMARK 3 T13: -0.0209 T23: -0.0191 REMARK 3 L TENSOR REMARK 3 L11: 0.5849 L22: 0.2108 REMARK 3 L33: 0.7400 L12: -0.3921 REMARK 3 L13: -0.7095 L23: 0.3313 REMARK 3 S TENSOR REMARK 3 S11: 0.1317 S12: -0.2045 S13: -0.0512 REMARK 3 S21: 0.2936 S22: -0.0444 S23: -0.4271 REMARK 3 S31: -0.0332 S32: 0.2843 S33: -0.0001 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 55 THROUGH 162 ) REMARK 3 ORIGIN FOR THE GROUP (A): -24.7341 11.7647 34.9060 REMARK 3 T TENSOR REMARK 3 T11: 0.4509 T22: 0.2776 REMARK 3 T33: 0.2672 T12: 0.0073 REMARK 3 T13: 0.0849 T23: -0.0433 REMARK 3 L TENSOR REMARK 3 L11: 1.2570 L22: 0.3176 REMARK 3 L33: 1.7438 L12: 0.0904 REMARK 3 L13: -0.5666 L23: -0.1458 REMARK 3 S TENSOR REMARK 3 S11: 0.2163 S12: -0.1157 S13: 0.2643 REMARK 3 S21: 0.1688 S22: -0.0093 S23: -0.0319 REMARK 3 S31: -0.4196 S32: -0.0540 S33: 0.0011 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 163 THROUGH 275 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.8522 2.0082 30.6154 REMARK 3 T TENSOR REMARK 3 T11: 0.3418 T22: 0.2852 REMARK 3 T33: 0.2226 T12: -0.0485 REMARK 3 T13: 0.0005 T23: -0.0230 REMARK 3 L TENSOR REMARK 3 L11: 1.6326 L22: 0.7625 REMARK 3 L33: 1.7814 L12: 0.1810 REMARK 3 L13: -1.2947 L23: -0.1457 REMARK 3 S TENSOR REMARK 3 S11: 0.1322 S12: -0.2516 S13: 0.1027 REMARK 3 S21: 0.1785 S22: -0.0592 S23: -0.0574 REMARK 3 S31: -0.1699 S32: 0.2077 S33: -0.0000 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 276 THROUGH 297 ) REMARK 3 ORIGIN FOR THE GROUP (A): -24.0988 7.5052 12.5660 REMARK 3 T TENSOR REMARK 3 T11: 0.4120 T22: 0.4148 REMARK 3 T33: 0.3159 T12: 0.0462 REMARK 3 T13: 0.0274 T23: -0.0066 REMARK 3 L TENSOR REMARK 3 L11: 0.0894 L22: 0.0538 REMARK 3 L33: 0.2849 L12: -0.0232 REMARK 3 L13: -0.1408 L23: -0.0911 REMARK 3 S TENSOR REMARK 3 S11: -0.0996 S12: 0.3325 S13: 0.2131 REMARK 3 S21: 0.2048 S22: 0.1217 S23: 0.0047 REMARK 3 S31: 0.0128 S32: -0.2761 S33: 0.0000 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 298 THROUGH 332 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.4112 -0.0150 20.8504 REMARK 3 T TENSOR REMARK 3 T11: 0.3183 T22: 0.2647 REMARK 3 T33: 0.2410 T12: -0.0235 REMARK 3 T13: 0.0278 T23: -0.0107 REMARK 3 L TENSOR REMARK 3 L11: 0.4394 L22: 0.3468 REMARK 3 L33: 0.6639 L12: -0.2199 REMARK 3 L13: -0.4519 L23: 0.0597 REMARK 3 S TENSOR REMARK 3 S11: 0.0015 S12: 0.0276 S13: -0.0575 REMARK 3 S21: 0.0825 S22: 0.0326 S23: -0.1214 REMARK 3 S31: -0.0920 S32: -0.0895 S33: -0.0000 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 333 THROUGH 361 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.7661 2.2506 12.6009 REMARK 3 T TENSOR REMARK 3 T11: 0.3378 T22: 0.3205 REMARK 3 T33: 0.2706 T12: 0.0012 REMARK 3 T13: 0.0088 T23: -0.0139 REMARK 3 L TENSOR REMARK 3 L11: 0.6773 L22: 0.1550 REMARK 3 L33: 0.3892 L12: -0.2760 REMARK 3 L13: -0.4283 L23: -0.0236 REMARK 3 S TENSOR REMARK 3 S11: 0.1610 S12: 0.0719 S13: -0.0163 REMARK 3 S21: 0.0095 S22: -0.0955 S23: -0.0714 REMARK 3 S31: -0.1464 S32: -0.1097 S33: 0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6T35 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 10-OCT-19. REMARK 100 THE DEPOSITION ID IS D_1292104782. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-AUG-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9763 REMARK 200 MONOCHROMATOR : DOUBLE MIRRORS REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.1 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 45784 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 56.340 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 77.50 REMARK 200 R MERGE (I) : 0.12800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 28.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 81.20 REMARK 200 R MERGE FOR SHELL (I) : 5.43700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.1 REMARK 200 STARTING MODEL: 1IEM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.53 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.77 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% W/V PEG6000, 0.01 M ZNCL2, 0.1 M REMARK 280 MES PH = 6.0, PH 6.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 13555 Y+1/4,X+3/4,-Z+3/4 REMARK 290 14555 -Y+1/4,-X+1/4,-Z+1/4 REMARK 290 15555 Y+3/4,-X+3/4,Z+1/4 REMARK 290 16555 -Y+3/4,X+1/4,Z+3/4 REMARK 290 17555 X+1/4,Z+3/4,-Y+3/4 REMARK 290 18555 -X+3/4,Z+1/4,Y+3/4 REMARK 290 19555 -X+1/4,-Z+1/4,-Y+1/4 REMARK 290 20555 X+3/4,-Z+3/4,Y+1/4 REMARK 290 21555 Z+1/4,Y+3/4,-X+3/4 REMARK 290 22555 Z+3/4,-Y+3/4,X+1/4 REMARK 290 23555 -Z+3/4,Y+1/4,X+3/4 REMARK 290 24555 -Z+1/4,-Y+1/4,-X+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 69.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 69.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 69.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 69.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 69.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 69.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 69.00000 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 69.00000 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 69.00000 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 69.00000 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 69.00000 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 69.00000 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 69.00000 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 69.00000 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 69.00000 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 69.00000 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 69.00000 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 69.00000 REMARK 290 SMTRY1 13 0.000000 1.000000 0.000000 34.50000 REMARK 290 SMTRY2 13 1.000000 0.000000 0.000000 103.50000 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 103.50000 REMARK 290 SMTRY1 14 0.000000 -1.000000 0.000000 34.50000 REMARK 290 SMTRY2 14 -1.000000 0.000000 0.000000 34.50000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 34.50000 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 103.50000 REMARK 290 SMTRY2 15 -1.000000 0.000000 0.000000 103.50000 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 34.50000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 103.50000 REMARK 290 SMTRY2 16 1.000000 0.000000 0.000000 34.50000 REMARK 290 SMTRY3 16 0.000000 0.000000 1.000000 103.50000 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 34.50000 REMARK 290 SMTRY2 17 0.000000 0.000000 1.000000 103.50000 REMARK 290 SMTRY3 17 0.000000 -1.000000 0.000000 103.50000 REMARK 290 SMTRY1 18 -1.000000 0.000000 0.000000 103.50000 REMARK 290 SMTRY2 18 0.000000 0.000000 1.000000 34.50000 REMARK 290 SMTRY3 18 0.000000 1.000000 0.000000 103.50000 REMARK 290 SMTRY1 19 -1.000000 0.000000 0.000000 34.50000 REMARK 290 SMTRY2 19 0.000000 0.000000 -1.000000 34.50000 REMARK 290 SMTRY3 19 0.000000 -1.000000 0.000000 34.50000 REMARK 290 SMTRY1 20 1.000000 0.000000 0.000000 103.50000 REMARK 290 SMTRY2 20 0.000000 0.000000 -1.000000 103.50000 REMARK 290 SMTRY3 20 0.000000 1.000000 0.000000 34.50000 REMARK 290 SMTRY1 21 0.000000 0.000000 1.000000 34.50000 REMARK 290 SMTRY2 21 0.000000 1.000000 0.000000 103.50000 REMARK 290 SMTRY3 21 -1.000000 0.000000 0.000000 103.50000 REMARK 290 SMTRY1 22 0.000000 0.000000 1.000000 103.50000 REMARK 290 SMTRY2 22 0.000000 -1.000000 0.000000 103.50000 REMARK 290 SMTRY3 22 1.000000 0.000000 0.000000 34.50000 REMARK 290 SMTRY1 23 0.000000 0.000000 -1.000000 103.50000 REMARK 290 SMTRY2 23 0.000000 1.000000 0.000000 34.50000 REMARK 290 SMTRY3 23 1.000000 0.000000 0.000000 103.50000 REMARK 290 SMTRY1 24 0.000000 0.000000 -1.000000 34.50000 REMARK 290 SMTRY2 24 0.000000 -1.000000 0.000000 34.50000 REMARK 290 SMTRY3 24 -1.000000 0.000000 0.000000 34.50000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 ZN ZN A 405 LIES ON A SPECIAL POSITION. REMARK 375 CL CL A 408 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 721 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 729 LIES ON A SPECIAL POSITION. REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 6 CD OE1 NE2 REMARK 470 GLN A 7 CD OE1 NE2 REMARK 470 ARG A 14 CG CD NE CZ NH1 NH2 REMARK 470 TYR A 45 OH REMARK 470 LYS A 51 CD CE NZ REMARK 470 GLN A 52 CD OE1 NE2 REMARK 470 GLN A 57 OE1 NE2 REMARK 470 LYS A 84 NZ REMARK 470 LYS A 91 NZ REMARK 470 LYS A 99 CG CD CE NZ REMARK 470 ASN A 102 CG OD1 ND2 REMARK 470 ASP A 123 CG OD1 OD2 REMARK 470 GLU A 124 CG CD OE1 OE2 REMARK 470 LYS A 126 CD CE NZ REMARK 470 SER A 128 OG REMARK 470 SER A 129 OG REMARK 470 ARG A 133 CD NE CZ NH1 NH2 REMARK 470 GLN A 139 CG CD OE1 NE2 REMARK 470 LYS A 164 CE NZ REMARK 470 GLN A 172 CG CD OE1 NE2 REMARK 470 GLN A 175 CG CD OE1 NE2 REMARK 470 LYS A 183 CD CE NZ REMARK 470 GLU A 196 CD OE1 OE2 REMARK 470 LYS A 197 CE NZ REMARK 470 ARG A 204 NE CZ NH1 NH2 REMARK 470 GLU A 205 CD OE1 OE2 REMARK 470 LYS A 207 CG CD CE NZ REMARK 470 SER A 212 OG REMARK 470 ARG A 232 NE CZ NH1 NH2 REMARK 470 LYS A 239 CE NZ REMARK 470 ASN A 244 OD1 ND2 REMARK 470 LYS A 246 NZ REMARK 470 LYS A 290 CG CD CE NZ REMARK 470 ARG A 296 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 299 CG CD CE NZ REMARK 470 GLU A 331 CD OE1 OE2 REMARK 470 LYS A 332 CE NZ REMARK 470 GLN A 355 CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 720 O HOH A 747 1.84 REMARK 500 O HOH A 659 O HOH A 720 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 178 -60.32 -124.33 REMARK 500 TYR A 221 15.87 -158.59 REMARK 500 ALA A 307 122.42 -38.75 REMARK 500 ASN A 341 42.28 -97.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 PEG A 402 REMARK 610 PEG A 403 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 405 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 13 NE2 REMARK 620 2 HIS A 13 NE2 0.0 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 407 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 186 ND1 REMARK 620 2 ASP A 229 OD1 139.3 REMARK 620 3 HOH A 620 O 93.1 95.3 REMARK 620 4 HOH A 638 O 94.7 85.4 167.2 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue M9W A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 408 DBREF 6T35 A 4 361 UNP P00811 AMPC_ECOLI 20 377 SEQRES 1 A 358 ALA PRO GLN GLN ILE ASN ASP ILE VAL HIS ARG THR ILE SEQRES 2 A 358 THR PRO LEU ILE GLU GLN GLN LYS ILE PRO GLY MET ALA SEQRES 3 A 358 VAL ALA VAL ILE TYR GLN GLY LYS PRO TYR TYR PHE THR SEQRES 4 A 358 TRP GLY TYR ALA ASP ILE ALA LYS LYS GLN PRO VAL THR SEQRES 5 A 358 GLN GLN THR LEU PHE GLU LEU GLY SER VAL SER LYS THR SEQRES 6 A 358 PHE THR GLY VAL LEU GLY GLY ASP ALA ILE ALA ARG GLY SEQRES 7 A 358 GLU ILE LYS LEU SER ASP PRO THR THR LYS TYR TRP PRO SEQRES 8 A 358 GLU LEU THR ALA LYS GLN TRP ASN GLY ILE THR LEU LEU SEQRES 9 A 358 HIS LEU ALA THR TYR THR ALA GLY GLY LEU PRO LEU GLN SEQRES 10 A 358 VAL PRO ASP GLU VAL LYS SER SER SER ASP LEU LEU ARG SEQRES 11 A 358 PHE TYR GLN ASN TRP GLN PRO ALA TRP ALA PRO GLY THR SEQRES 12 A 358 GLN ARG LEU TYR ALA ASN SER SER ILE GLY LEU PHE GLY SEQRES 13 A 358 ALA LEU ALA VAL LYS PRO SER GLY LEU SER PHE GLU GLN SEQRES 14 A 358 ALA MET GLN THR ARG VAL PHE GLN PRO LEU LYS LEU ASN SEQRES 15 A 358 HIS THR TRP ILE ASN VAL PRO PRO ALA GLU GLU LYS ASN SEQRES 16 A 358 TYR ALA TRP GLY TYR ARG GLU GLY LYS ALA VAL HIS VAL SEQRES 17 A 358 SER PRO GLY ALA LEU ASP ALA GLU ALA TYR GLY VAL LYS SEQRES 18 A 358 SER THR ILE GLU ASP MET ALA ARG TRP VAL GLN SER ASN SEQRES 19 A 358 LEU LYS PRO LEU ASP ILE ASN GLU LYS THR LEU GLN GLN SEQRES 20 A 358 GLY ILE GLN LEU ALA GLN SER ARG TYR TRP GLN THR GLY SEQRES 21 A 358 ASP MET TYR GLN GLY LEU GLY TRP GLU MET LEU ASP TRP SEQRES 22 A 358 PRO VAL ASN PRO ASP SER ILE ILE ASN GLY SER ASP ASN SEQRES 23 A 358 LYS ILE ALA LEU ALA ALA ARG PRO VAL LYS ALA ILE THR SEQRES 24 A 358 PRO PRO THR PRO ALA VAL ARG ALA SER TRP VAL HIS LYS SEQRES 25 A 358 THR GLY ALA THR GLY GLY PHE GLY SER TYR VAL ALA PHE SEQRES 26 A 358 ILE PRO GLU LYS GLU LEU GLY ILE VAL MET LEU ALA ASN SEQRES 27 A 358 LYS ASN TYR PRO ASN PRO ALA ARG VAL ASP ALA ALA TRP SEQRES 28 A 358 GLN ILE LEU ASN ALA LEU GLN HET SO4 A 401 5 HET PEG A 402 4 HET PEG A 403 5 HET M9W A 404 21 HET ZN A 405 1 HET ZN A 406 1 HET ZN A 407 1 HET CL A 408 1 HETNAM SO4 SULFATE ION HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM M9W ENMETAZOBACTAM DERIVED TRANS-ENAMINE ADDUCT HETNAM ZN ZINC ION HETNAM CL CHLORIDE ION HETSYN M9W (2S,3S)-3-METHYL-4-(3-METHYL-1,2,3-TRIAZOL-3-IUM-1-YL)- HETSYN 2 M9W 2-[[(E)-3-OXIDANYLIDENEPROP-1-ENYL]AMINO]-3-SULFINO- HETSYN 3 M9W BUTANOIC ACID FORMUL 2 SO4 O4 S 2- FORMUL 3 PEG 2(C4 H10 O3) FORMUL 5 M9W C11 H17 N4 O6 S 1+ FORMUL 6 ZN 3(ZN 2+) FORMUL 9 CL CL 1- FORMUL 10 HOH *256(H2 O) HELIX 1 AA1 PRO A 5 LYS A 24 1 20 HELIX 2 AA2 VAL A 65 ARG A 80 1 16 HELIX 3 AA3 PRO A 88 TRP A 93 1 6 HELIX 4 AA4 ALA A 98 ASN A 102 5 5 HELIX 5 AA5 THR A 105 THR A 111 1 7 HELIX 6 AA6 SER A 127 TRP A 138 1 12 HELIX 7 AA7 ALA A 151 VAL A 163 1 13 HELIX 8 AA8 LYS A 164 GLY A 167 5 4 HELIX 9 AA9 SER A 169 VAL A 178 1 10 HELIX 10 AB1 PRO A 192 TYR A 199 5 8 HELIX 11 AB2 LEU A 216 TYR A 221 1 6 HELIX 12 AB3 THR A 226 LYS A 239 1 14 HELIX 13 AB4 PRO A 240 ILE A 243 5 4 HELIX 14 AB5 GLU A 245 GLN A 256 1 12 HELIX 15 AB6 ASN A 279 SER A 287 1 9 HELIX 16 AB7 ASP A 288 LEU A 293 1 6 HELIX 17 AB8 PRO A 330 GLU A 333 5 4 HELIX 18 AB9 PRO A 345 GLN A 361 1 17 SHEET 1 AA110 GLN A 52 PRO A 53 0 SHEET 2 AA110 LYS A 37 ASP A 47 -1 N ALA A 46 O GLN A 52 SHEET 3 AA110 GLY A 27 TYR A 34 -1 N VAL A 30 O PHE A 41 SHEET 4 AA110 LEU A 334 ALA A 340 -1 O LEU A 339 N ALA A 29 SHEET 5 AA110 GLY A 323 ILE A 329 -1 N ILE A 329 O LEU A 334 SHEET 6 AA110 SER A 311 ALA A 318 -1 N GLY A 317 O SER A 324 SHEET 7 AA110 GLU A 272 ASP A 275 -1 N LEU A 274 O TRP A 312 SHEET 8 AA110 MET A 265 GLN A 267 -1 N TYR A 266 O MET A 273 SHEET 9 AA110 ARG A 258 THR A 262 -1 N TYR A 259 O GLN A 267 SHEET 10 AA110 LYS A 299 THR A 305 -1 O LYS A 299 N GLN A 261 SHEET 1 AA2 3 PHE A 60 GLU A 61 0 SHEET 2 AA2 3 LYS A 224 SER A 225 -1 O SER A 225 N PHE A 60 SHEET 3 AA2 3 THR A 187 TRP A 188 -1 N TRP A 188 O LYS A 224 SHEET 1 AA3 2 GLN A 147 ARG A 148 0 SHEET 2 AA3 2 ARG A 296 PRO A 297 -1 O ARG A 296 N ARG A 148 SHEET 1 AA4 2 GLY A 202 ARG A 204 0 SHEET 2 AA4 2 LYS A 207 VAL A 209 -1 O VAL A 209 N GLY A 202 LINK OG SER A 64 C02 M9W A 404 1555 1555 1.40 LINK NE2 HIS A 13 ZN ZN A 405 1555 1555 2.06 LINK NE2 HIS A 13 ZN ZN A 405 1555 5555 2.06 LINK NE2 HIS A 186 ZN ZN A 406 1555 1555 2.37 LINK ND1 HIS A 186 ZN ZN A 407 1555 1555 2.41 LINK OD1 ASP A 229 ZN ZN A 407 1555 1555 2.31 LINK ZN ZN A 407 O HOH A 620 1555 1555 2.34 LINK ZN ZN A 407 O HOH A 638 1555 1555 1.93 CISPEP 1 TRP A 276 PRO A 277 0 4.38 CISPEP 2 THR A 302 PRO A 303 0 -3.67 SITE 1 AC1 2 SER A 127 ALA A 215 SITE 1 AC2 2 LYS A 246 GLN A 250 SITE 1 AC3 9 SER A 64 GLN A 120 SER A 212 TYR A 221 SITE 2 AC3 9 GLY A 317 ALA A 318 GLY A 320 HOH A 503 SITE 3 AC3 9 HOH A 626 SITE 1 AC4 2 HIS A 13 CL A 408 SITE 1 AC5 1 HIS A 186 SITE 1 AC6 4 HIS A 186 ASP A 229 HOH A 620 HOH A 638 SITE 1 AC7 2 HIS A 13 ZN A 405 CRYST1 138.000 138.000 138.000 90.00 90.00 90.00 P 43 3 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007246 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007246 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007246 0.00000