HEADER CELL CYCLE 11-OCT-19 6T3I TITLE SOLUTION STRUCTURE OF THE HRP2 IBD COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEPATOMA-DERIVED GROWTH FACTOR-RELATED PROTEIN 2; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: HRP-2,HEPATOMA-DERIVED GROWTH FACTOR 2,HDGF-2; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HDGFL2, HDGF2, HDGFRP2, HRP2, UNQ785/PRO1604; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS EPIGENETIC READER, CELL CYCLE EXPDTA SOLUTION NMR NUMMDL 30 AUTHOR V.VEVERKA REVDAT 3 14-JUN-23 6T3I 1 REMARK REVDAT 2 02-JUN-21 6T3I 1 JRNL REVDAT 1 18-NOV-20 6T3I 0 JRNL AUTH S.VAN BELLE,S.EL ASHKAR,K.CERMAKOVA,F.MATTHIJSSENS, JRNL AUTH 2 S.GOOSSENS,A.CANELLA,C.H.HODGES,F.CHRIST,J.DE RIJCK, JRNL AUTH 3 P.VAN VLIERBERGHE,V.VEVERKA,Z.DEBYSER JRNL TITL UNLIKE ITS PARALOG LEDGF/P75, HRP-2 IS DISPENSABLE FOR MLL-R JRNL TITL 2 LEUKEMOGENESIS BUT IMPORTANT FOR LEUKEMIC CELL SURVIVAL. JRNL REF CELLS V. 10 2021 JRNL REFN ESSN 2073-4409 JRNL PMID 33477970 JRNL DOI 10.3390/CELLS10010192 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA, YASARA REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH (CYANA), YASARA REMARK 3 (YASARA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6T3I COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 11-OCT-19. REMARK 100 THE DEPOSITION ID IS D_1292104783. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 175 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 0.5 MM [U-13C; U-15N] HRP2, 25 REMARK 210 MM TRIS, 150 MM NACL, 1 MM TCEP, REMARK 210 95% H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D HNCACB; 3D CBCA(CO)NH; 3D REMARK 210 HNCO; 3D HN(CO)CA; 3D HCCH-TOCSY; REMARK 210 3D 1H-15N NOESY; 3D 1H-13C NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 850 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN, SPARKY REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 30 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 5450 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 490 75.90 -155.31 REMARK 500 1 VAL A 508 46.49 -95.69 REMARK 500 2 SER A 490 69.00 -156.39 REMARK 500 2 VAL A 508 46.77 -97.13 REMARK 500 3 SER A 490 72.70 -156.34 REMARK 500 3 VAL A 508 48.21 -101.04 REMARK 500 4 SER A 490 76.20 -158.93 REMARK 500 4 VAL A 508 46.91 -97.99 REMARK 500 5 SER A 490 76.97 -160.48 REMARK 500 5 VAL A 508 47.93 -98.16 REMARK 500 6 SER A 490 73.04 -158.12 REMARK 500 6 VAL A 508 48.11 -97.22 REMARK 500 7 ALA A 467 178.41 62.20 REMARK 500 7 SER A 490 73.55 -161.15 REMARK 500 7 VAL A 508 49.14 -98.92 REMARK 500 8 SER A 490 75.45 -162.26 REMARK 500 8 VAL A 508 46.32 -99.05 REMARK 500 9 SER A 490 74.00 -159.43 REMARK 500 9 VAL A 508 47.56 -98.27 REMARK 500 10 SER A 490 72.70 -159.63 REMARK 500 10 VAL A 508 47.22 -98.55 REMARK 500 11 ALA A 467 -159.82 57.47 REMARK 500 11 SER A 490 78.19 -159.80 REMARK 500 11 VAL A 508 45.00 -98.92 REMARK 500 12 SER A 490 76.40 -160.93 REMARK 500 12 VAL A 508 47.39 -98.82 REMARK 500 13 SER A 490 81.13 -168.73 REMARK 500 13 VAL A 508 50.18 -100.28 REMARK 500 14 SER A 490 73.53 -157.59 REMARK 500 14 VAL A 508 47.18 -94.07 REMARK 500 15 SER A 490 78.97 -161.45 REMARK 500 15 VAL A 508 48.76 -96.59 REMARK 500 16 SER A 490 76.99 -159.59 REMARK 500 16 VAL A 508 48.30 -98.30 REMARK 500 17 SER A 490 79.19 -163.76 REMARK 500 17 VAL A 508 47.73 -98.54 REMARK 500 17 TYR A 529 95.11 -69.50 REMARK 500 18 SER A 490 72.85 -159.93 REMARK 500 18 VAL A 508 45.80 -96.19 REMARK 500 19 SER A 490 79.54 -165.98 REMARK 500 19 VAL A 508 47.59 -98.73 REMARK 500 20 SER A 490 77.55 -160.08 REMARK 500 20 VAL A 508 76.90 -106.93 REMARK 500 21 SER A 490 75.99 -160.69 REMARK 500 21 VAL A 508 50.72 -98.63 REMARK 500 22 SER A 490 79.66 -163.08 REMARK 500 22 VAL A 508 48.50 -95.70 REMARK 500 23 SER A 490 76.68 -163.03 REMARK 500 23 VAL A 508 49.76 -93.33 REMARK 500 24 SER A 490 71.74 -159.58 REMARK 500 REMARK 500 THIS ENTRY HAS 64 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 34442 RELATED DB: BMRB REMARK 900 SOLUTION STRUCTURE OF THE HRP2 IBD DBREF 6T3I A 469 549 UNP Q7Z4V5 HDGR2_HUMAN 469 549 SEQADV 6T3I ALA A 466 UNP Q7Z4V5 EXPRESSION TAG SEQADV 6T3I ALA A 467 UNP Q7Z4V5 EXPRESSION TAG SEQADV 6T3I SER A 468 UNP Q7Z4V5 EXPRESSION TAG SEQADV 6T3I GLY A 550 UNP Q7Z4V5 EXPRESSION TAG SEQADV 6T3I SER A 551 UNP Q7Z4V5 EXPRESSION TAG SEQRES 1 A 86 ALA ALA SER PRO SER VAL GLU GLU LYS LEU GLN LYS LEU SEQRES 2 A 86 HIS SER GLU ILE LYS PHE ALA LEU LYS VAL ASP SER PRO SEQRES 3 A 86 ASP VAL LYS ARG CYS LEU ASN ALA LEU GLU GLU LEU GLY SEQRES 4 A 86 THR LEU GLN VAL THR SER GLN ILE LEU GLN LYS ASN THR SEQRES 5 A 86 ASP VAL VAL ALA THR LEU LYS LYS ILE ARG ARG TYR LYS SEQRES 6 A 86 ALA ASN LYS ASP VAL MET GLU LYS ALA ALA GLU VAL TYR SEQRES 7 A 86 THR ARG LEU LYS SER ARG GLY SER HELIX 1 AA1 SER A 470 LEU A 486 1 17 HELIX 2 AA2 ASP A 492 GLY A 504 1 13 HELIX 3 AA3 THR A 509 GLN A 514 1 6 HELIX 4 AA4 ASN A 516 ARG A 527 1 12 HELIX 5 AA5 ASN A 532 SER A 548 1 17 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1