HEADER RNA 11-OCT-19 6T3K TITLE STRUCTURE OF OCEANOBACILLUS IHEYENSIS GROUP II INTRON G-MUTANT TITLE 2 (C289G/C358G/G385C) IN THE PRESENCE OF K+, MG2+ AND 5'-EXON COMPND MOL_ID: 1; COMPND 2 MOLECULE: GROUP IIC INTRON RIBOZYME; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: DOMAINS 1-5; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: GROUP IIC INTRON RIBOZYME; COMPND 9 CHAIN: B; COMPND 10 FRAGMENT: 5'-EXON; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: OCEANOBACILLUS IHEYENSIS; SOURCE 4 ORGANISM_TAXID: 182710; SOURCE 5 OTHER_DETAILS: IN VITRO TRANSCRIPTION SYSTEM; SOURCE 6 MOL_ID: 2; SOURCE 7 SYNTHETIC: YES; SOURCE 8 ORGANISM_SCIENTIFIC: OCEANOBACILLUS IHEYENSIS; SOURCE 9 ORGANISM_TAXID: 182710; SOURCE 10 OTHER_DETAILS: IN VITRO TRANSCRIPTION SYSTEM KEYWDS RIBOZYME, SELF-SPLICING, RETROTRANSPOSITION, SPLICEOSOME, RNA EXPDTA X-RAY DIFFRACTION AUTHOR M.MARCIA,A.M.PYLE REVDAT 3 24-JAN-24 6T3K 1 LINK REVDAT 2 17-JUN-20 6T3K 1 JRNL REVDAT 1 13-MAY-20 6T3K 0 JRNL AUTH J.MANIGRASSO,I.CHILLON,V.GENNA,P.VIDOSSICH,S.SOMAROWTHU, JRNL AUTH 2 A.M.PYLE,M.DE VIVO,M.MARCIA JRNL TITL VISUALIZING GROUP II INTRON DYNAMICS BETWEEN THE FIRST AND JRNL TITL 2 SECOND STEPS OF SPLICING. JRNL REF NAT COMMUN V. 11 2837 2020 JRNL REFN ESSN 2041-1723 JRNL PMID 32503992 JRNL DOI 10.1038/S41467-020-16741-4 REMARK 2 REMARK 2 RESOLUTION. 3.44 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0032 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.44 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.46 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 89.6 REMARK 3 NUMBER OF REFLECTIONS : 22183 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.212 REMARK 3 R VALUE (WORKING SET) : 0.209 REMARK 3 FREE R VALUE : 0.257 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1201 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.44 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.53 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1491 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 83.12 REMARK 3 BIN R VALUE (WORKING SET) : 0.5630 REMARK 3 BIN FREE R VALUE SET COUNT : 80 REMARK 3 BIN FREE R VALUE : 0.5960 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 0 REMARK 3 NUCLEIC ACID ATOMS : 8478 REMARK 3 HETEROGEN ATOMS : 101 REMARK 3 SOLVENT ATOMS : 38 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 128.3 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.66000 REMARK 3 B22 (A**2) : -2.94000 REMARK 3 B33 (A**2) : -0.73000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.582 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.497 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 70.519 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.943 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.924 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 9552 ; 0.009 ; 0.011 REMARK 3 BOND LENGTHS OTHERS (A): 3924 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 14877 ; 1.894 ; 1.281 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9526 ; 1.677 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1576 ; 0.118 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4788 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 2130 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 390 REMARK 3 RESIDUE RANGE : B -4 B 0 REMARK 3 ORIGIN FOR THE GROUP (A): 23.8480 9.1240 475.5600 REMARK 3 T TENSOR REMARK 3 T11: 0.3585 T22: 0.2741 REMARK 3 T33: 0.2319 T12: -0.0463 REMARK 3 T13: 0.0469 T23: 0.0653 REMARK 3 L TENSOR REMARK 3 L11: 0.6536 L22: 2.7145 REMARK 3 L33: 1.7158 L12: -0.9155 REMARK 3 L13: -0.7453 L23: 1.0415 REMARK 3 S TENSOR REMARK 3 S11: -0.1941 S12: -0.2650 S13: -0.1528 REMARK 3 S21: 0.7427 S22: 0.1074 S23: 0.1763 REMARK 3 S31: 0.2599 S32: 0.1096 S33: 0.0866 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : WITH TLS ADDED HYDROGENS REMARK 3 HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 4 REMARK 4 6T3K COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 11-OCT-19. REMARK 100 THE DEPOSITION ID IS D_1292104788. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-JUL-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97950 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL SI(220) SIDE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS VERSION MARCH 30, 2013 REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.20 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24334 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.440 REMARK 200 RESOLUTION RANGE LOW (A) : 48.460 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.1 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05300 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 17.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.44 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.63 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.20 REMARK 200 R MERGE FOR SHELL (I) : 1.50800 REMARK 200 R SYM FOR SHELL (I) : 1.50800 REMARK 200 <I/SIGMA(I)> FOR SHELL : 0.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4FAR REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.68 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50 MM NA-HEPES PH 7.0, 100 MM REMARK 280 MAGNESIUM ACETATE, 150 MM POTASSIUM CHLORIDE, 10 MM LITHIUM REMARK 280 CHLORIDE, 4% PEG 8000, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 303K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 44.32950 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 112.48900 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 47.72650 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 112.48900 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 44.32950 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 47.72650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9450 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 56780 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -267.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 G B -7 REMARK 465 G B -6 REMARK 465 G B -5 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 G A 390 O5' C5' C4' O4' C3' O3' C2' REMARK 470 G A 390 O2' C1' N9 C8 N7 C5 C6 REMARK 470 G A 390 O6 N1 C2 N2 N3 C4 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OP1 G A 239 O HOH A 501 1.76 REMARK 500 N2 G A 289 N7 G A 358 1.80 REMARK 500 OP1 G A 111 O HOH A 502 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O2' C A 279 O2' G A 336 3559 1.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 G A 1 P G A 1 OP3 -0.118 REMARK 500 A A 49 O3' A A 50 P -0.087 REMARK 500 A A 56 O3' A A 57 P -0.091 REMARK 500 A A 171 O3' U A 172 P -0.074 REMARK 500 U A 271 O3' C A 272 P -0.074 REMARK 500 U A 273 O3' G A 274 P -0.092 REMARK 500 G A 335 O3' G A 336 P -0.082 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 G A 16 O5' - P - OP2 ANGL. DEV. = -5.5 DEGREES REMARK 500 G A 34 O5' - P - OP1 ANGL. DEV. = -6.1 DEGREES REMARK 500 G A 34 O5' - P - OP2 ANGL. DEV. = 10.3 DEGREES REMARK 500 U A 47 O5' - P - OP1 ANGL. DEV. = -7.5 DEGREES REMARK 500 A A 50 O5' - P - OP2 ANGL. DEV. = -5.4 DEGREES REMARK 500 C A 62 O5' - P - OP1 ANGL. DEV. = -7.4 DEGREES REMARK 500 U A 65 O5' - P - OP1 ANGL. DEV. = -7.3 DEGREES REMARK 500 U A 82 O5' - P - OP1 ANGL. DEV. = 8.3 DEGREES REMARK 500 G A 89 O5' - P - OP2 ANGL. DEV. = -5.5 DEGREES REMARK 500 U A 101 C2' - C3' - O3' ANGL. DEV. = 10.0 DEGREES REMARK 500 A A 106 O5' - P - OP2 ANGL. DEV. = -8.9 DEGREES REMARK 500 G A 111 O5' - P - OP2 ANGL. DEV. = -6.3 DEGREES REMARK 500 C A 112 O5' - P - OP2 ANGL. DEV. = -9.4 DEGREES REMARK 500 A A 120 P - O5' - C5' ANGL. DEV. = -10.2 DEGREES REMARK 500 A A 171 O5' - P - OP1 ANGL. DEV. = -7.7 DEGREES REMARK 500 A A 174 C5' - C4' - O4' ANGL. DEV. = 6.2 DEGREES REMARK 500 A A 191 O5' - P - OP1 ANGL. DEV. = 7.3 DEGREES REMARK 500 U A 202 O5' - P - OP1 ANGL. DEV. = 7.2 DEGREES REMARK 500 A A 233 O5' - P - OP2 ANGL. DEV. = -7.0 DEGREES REMARK 500 U A 285 O5' - P - OP2 ANGL. DEV. = -6.2 DEGREES REMARK 500 A A 287 C2' - C3' - O3' ANGL. DEV. = 11.7 DEGREES REMARK 500 G A 336 O5' - P - OP2 ANGL. DEV. = -5.5 DEGREES REMARK 500 C A 360 O5' - P - OP2 ANGL. DEV. = -8.0 DEGREES REMARK 500 C A 367 O5' - P - OP1 ANGL. DEV. = 11.1 DEGREES REMARK 500 C A 367 O5' - P - OP2 ANGL. DEV. = -8.5 DEGREES REMARK 500 G A 374 O5' - P - OP1 ANGL. DEV. = -7.2 DEGREES REMARK 500 A A 376 O5' - P - OP1 ANGL. DEV. = -6.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 EPE A 444 REMARK 610 EPE A 445 REMARK 610 EPE A 446 REMARK 610 EPE A 447 REMARK 610 EPE A 448 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 435 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G A 1 OP3 REMARK 620 2 U A 4 O4 158.5 REMARK 620 3 G A 5 O6 135.0 51.0 REMARK 620 4 A A 376 OP2 106.8 53.2 68.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 430 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 U A 4 O4 REMARK 620 2 G A 107 O6 75.0 REMARK 620 3 U A 375 O3' 103.5 102.2 REMARK 620 4 U A 375 O2' 134.0 74.3 52.1 REMARK 620 5 A A 376 OP2 59.5 83.0 44.7 83.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 436 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G A 32 O2' REMARK 620 2 G A 34 O6 59.3 REMARK 620 3 A A 50 O2' 89.8 80.3 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 414 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 U A 66 OP2 REMARK 620 2 A A 67 OP1 91.9 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 420 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 A A 67 OP2 REMARK 620 2 G A 68 N7 74.3 REMARK 620 3 G A 68 O6 140.5 68.4 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 408 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G A 107 OP1 REMARK 620 2 HOH A 504 O 57.5 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 410 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 C A 119 OP1 REMARK 620 2 G A 239 OP1 120.5 REMARK 620 3 HOH A 501 O 70.0 50.8 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 421 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 A A 154 OP2 REMARK 620 2 G A 155 N7 62.2 REMARK 620 3 HOH A 507 O 120.7 136.7 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 416 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 A A 181 OP2 REMARK 620 2 A A 223 OP1 84.0 REMARK 620 3 HOH A 537 O 101.2 116.5 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 419 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 A A 184 OP1 REMARK 620 2 HOH A 514 O 62.8 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 411 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 A A 186 OP2 REMARK 620 2 HOH A 518 O 88.8 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 441 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 U A 256 O4 REMARK 620 2 HOH A 506 O 104.1 REMARK 620 3 HOH A 526 O 151.4 94.4 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 425 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G A 266 O6 REMARK 620 2 HOH A 509 O 45.9 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 442 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G A 269 OP2 REMARK 620 2 HOH A 515 O 65.1 REMARK 620 3 HOH A 529 O 113.6 109.3 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 443 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G A 275 O6 REMARK 620 2 HOH A 516 O 59.4 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 437 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G A 288 O6 REMARK 620 2 G A 358 OP2 91.3 REMARK 620 3 G A 359 OP2 133.3 75.5 REMARK 620 4 G A 359 O5' 95.9 102.3 46.4 REMARK 620 5 C A 377 OP1 166.0 84.9 58.6 98.1 REMARK 620 6 C A 377 O5' 125.8 142.8 79.0 78.1 58.6 REMARK 620 7 C A 377 O4' 63.3 153.4 115.1 74.2 121.7 63.3 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 440 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G A 320 OP2 REMARK 620 2 G A 320 O6 91.6 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 406 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G A 325 O6 REMARK 620 2 HOH A 503 O 48.7 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 423 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 A A 355 OP2 REMARK 620 2 A A 356 OP2 94.9 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 401 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G A 358 OP1 REMARK 620 2 G A 359 OP2 81.4 REMARK 620 3 C A 377 OP1 70.2 76.1 REMARK 620 4 HOH B 101 O 149.7 100.9 81.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 429 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G A 359 OP1 REMARK 620 2 U A 375 OP1 175.5 REMARK 620 3 C A 377 OP2 121.8 62.2 REMARK 620 4 U B 0 O3' 132.0 50.7 64.6 REMARK 620 5 U B 0 O2' 97.3 80.9 126.4 62.0 REMARK 620 6 HOH B 101 O 86.7 97.4 61.3 52.9 89.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 409 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 C A 372 OP2 REMARK 620 2 HOH A 510 O 64.7 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 424 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 519 O REMARK 620 2 HOH A 525 O 64.8 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 409 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 410 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 411 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 412 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 413 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 414 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 415 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 416 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 417 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 418 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 419 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 420 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 421 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 422 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 423 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 424 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K A 425 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 426 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 427 REMARK 800 REMARK 800 SITE_IDENTIFIER: AF1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 428 REMARK 800 REMARK 800 SITE_IDENTIFIER: AF2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 429 REMARK 800 REMARK 800 SITE_IDENTIFIER: AF3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K A 430 REMARK 800 REMARK 800 SITE_IDENTIFIER: AF4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K A 431 REMARK 800 REMARK 800 SITE_IDENTIFIER: AF5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K A 432 REMARK 800 REMARK 800 SITE_IDENTIFIER: AF6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K A 433 REMARK 800 REMARK 800 SITE_IDENTIFIER: AF7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K A 434 REMARK 800 REMARK 800 SITE_IDENTIFIER: AF8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K A 435 REMARK 800 REMARK 800 SITE_IDENTIFIER: AF9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K A 436 REMARK 800 REMARK 800 SITE_IDENTIFIER: AG1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K A 437 REMARK 800 REMARK 800 SITE_IDENTIFIER: AG2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K A 438 REMARK 800 REMARK 800 SITE_IDENTIFIER: AG3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K A 439 REMARK 800 REMARK 800 SITE_IDENTIFIER: AG4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K A 440 REMARK 800 REMARK 800 SITE_IDENTIFIER: AG5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K A 441 REMARK 800 REMARK 800 SITE_IDENTIFIER: AG6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K A 442 REMARK 800 REMARK 800 SITE_IDENTIFIER: AG7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K A 443 REMARK 800 REMARK 800 SITE_IDENTIFIER: AG8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EPE A 444 REMARK 800 REMARK 800 SITE_IDENTIFIER: AG9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EPE A 445 REMARK 800 REMARK 800 SITE_IDENTIFIER: AH1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EPE A 446 REMARK 800 REMARK 800 SITE_IDENTIFIER: AH2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EPE A 447 REMARK 800 REMARK 800 SITE_IDENTIFIER: AH3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EPE A 448 REMARK 800 REMARK 800 SITE_IDENTIFIER: AH4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SPM A 449 REMARK 800 REMARK 800 SITE_IDENTIFIER: AH5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SPM A 450 DBREF 6T3K A 1 390 PDB 6T3K 6T3K 1 390 DBREF 6T3K B -7 0 PDB 6T3K 6T3K -7 0 SEQRES 1 A 390 G U G U G C C C G G C A U SEQRES 2 A 390 G G G U G C A G U C U A U SEQRES 3 A 390 A G G G U G A G A G U C C SEQRES 4 A 390 C G A A C U G U G A A G G SEQRES 5 A 390 C A G A A G U A A C A G U SEQRES 6 A 390 U A G C C U A A C G C A A SEQRES 7 A 390 G G G U G U C C G U G G C SEQRES 8 A 390 G A C A U G G A A U C U G SEQRES 9 A 390 A A G G A A G C G G A C G SEQRES 10 A 390 G C A A A C C U U C G G U SEQRES 11 A 390 C U G A G G A A C A C G A SEQRES 12 A 390 A C U U C A U A U G A G G SEQRES 13 A 390 C U A G G U A U C A A U G SEQRES 14 A 390 G A U G A G U U U G C A U SEQRES 15 A 390 A A C A A A A C A A A G U SEQRES 16 A 390 C C U U U C U G C C A A A SEQRES 17 A 390 G U U G G U A C A G A G U SEQRES 18 A 390 A A A U G A A G C A G A U SEQRES 19 A 390 U G A U G A A G G G A A A SEQRES 20 A 390 G A C U G C A U U C U U A SEQRES 21 A 390 C C C G G G G A G G U C U SEQRES 22 A 390 G G A A A C A G A A G U C SEQRES 23 A 390 A G G A G A A G U C A U A SEQRES 24 A 390 G U A C C C U G U U C G C SEQRES 25 A 390 A G G G G A A G G A C G G SEQRES 26 A 390 A A C A A G U A U G G C G SEQRES 27 A 390 U U C G C G C C U A A G C SEQRES 28 A 390 U U G A A C G G C C G U A SEQRES 29 A 390 U A C C G A A C G G U A C SEQRES 30 A 390 G U A C G G U C G U G U G SEQRES 1 B 8 G G G G U U A U HET MG A 401 1 HET MG A 402 1 HET MG A 403 1 HET MG A 404 1 HET MG A 405 1 HET MG A 406 1 HET MG A 407 1 HET MG A 408 1 HET MG A 409 1 HET MG A 410 1 HET MG A 411 1 HET MG A 412 1 HET MG A 413 1 HET MG A 414 1 HET MG A 415 1 HET MG A 416 1 HET MG A 417 1 HET MG A 418 1 HET MG A 419 1 HET MG A 420 1 HET MG A 421 1 HET MG A 422 1 HET MG A 423 1 HET MG A 424 1 HET K A 425 1 HET MG A 426 1 HET MG A 427 1 HET MG A 428 1 HET MG A 429 1 HET K A 430 1 HET K A 431 1 HET K A 432 1 HET K A 433 1 HET K A 434 1 HET K A 435 1 HET K A 436 1 HET K A 437 1 HET K A 438 1 HET K A 439 1 HET K A 440 1 HET K A 441 1 HET K A 442 1 HET K A 443 1 HET EPE A 444 5 HET EPE A 445 12 HET EPE A 446 4 HET EPE A 447 4 HET EPE A 448 5 HET SPM A 449 14 HET SPM A 450 14 HETNAM MG MAGNESIUM ION HETNAM K POTASSIUM ION HETNAM EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID HETNAM SPM SPERMINE HETSYN EPE HEPES FORMUL 3 MG 28(MG 2+) FORMUL 27 K 15(K 1+) FORMUL 46 EPE 5(C8 H18 N2 O4 S) FORMUL 51 SPM 2(C10 H26 N4) FORMUL 53 HOH *38(H2 O) LINK OP3 G A 1 K K A 435 1555 1555 3.33 LINK O4 U A 4 K K A 430 1555 1555 3.06 LINK O4 U A 4 K K A 435 1555 1555 3.45 LINK O6 G A 5 K K A 435 1555 1555 3.32 LINK OP1 C A 6 MG MG A 417 1555 1555 2.76 LINK OP2 U A 26 MG MG A 405 1555 1555 2.44 LINK O6 G A 28 K K A 432 1555 1555 2.54 LINK O2' G A 32 K K A 436 1555 1555 3.03 LINK O6 G A 34 K K A 436 1555 1555 3.28 LINK O2' A A 50 K K A 436 1555 4549 2.56 LINK OP2 U A 66 MG MG A 414 1555 1555 2.38 LINK OP1 A A 67 MG MG A 414 1555 1555 2.34 LINK OP2 A A 67 MG MG A 420 1555 1555 2.29 LINK N7 G A 68 MG MG A 420 1555 1555 2.36 LINK O6 G A 68 MG MG A 420 1555 1555 2.98 LINK O6 G A 80 K K A 433 1555 1555 3.39 LINK OP1 A A 105 MG MG A 412 1555 1555 2.55 LINK OP1 G A 107 MG MG A 408 1555 1555 2.34 LINK O6 G A 107 K K A 430 1555 1555 2.98 LINK OP1 C A 119 MG MG A 410 1555 1555 2.65 LINK OP1 A A 120 MG MG A 428 1555 1555 2.44 LINK OP2 G A 136 MG MG A 413 1555 1555 2.20 LINK N7 G A 142 MG MG A 427 1555 1555 2.30 LINK OP2 A A 154 MG MG A 421 1555 1555 2.02 LINK N7 G A 155 MG MG A 421 1555 1555 2.54 LINK OP2 A A 181 MG MG A 416 1555 1555 2.82 LINK OP1 A A 184 MG MG A 419 1555 1555 2.56 LINK OP2 A A 186 MG MG A 411 1555 1555 2.18 LINK OP1 A A 223 MG MG A 416 1555 1555 2.70 LINK OP1 G A 239 MG MG A 410 1555 1555 2.07 LINK O4 U A 256 K K A 441 1555 1555 3.15 LINK O6 G A 264 K K A 434 1555 1555 3.06 LINK O6 G A 266 K K A 425 1555 1555 3.32 LINK OP2 G A 269 K K A 442 1555 1555 2.25 LINK O6 G A 275 K K A 431 1555 1555 3.09 LINK O6 G A 275 K K A 443 1555 1555 2.76 LINK OP2 A A 283 MG MG A 426 1555 1555 2.40 LINK OP1 U A 285 MG MG A 422 1555 1555 2.26 LINK O6 G A 288 K K A 437 1555 1555 2.87 LINK OP2 G A 320 K K A 440 1555 1555 2.75 LINK O6 G A 320 K K A 440 1555 1555 3.33 LINK O6 G A 325 MG MG A 406 1555 1555 2.57 LINK O4 U A 332 K K A 438 1555 1555 3.39 LINK OP2 A A 355 MG MG A 423 1555 1555 2.14 LINK OP2 A A 356 MG MG A 423 1555 1555 2.60 LINK OP1 G A 358 MG MG A 401 1555 1555 2.06 LINK OP2 G A 358 K K A 437 1555 1555 2.93 LINK OP2 G A 359 MG MG A 401 1555 1555 2.21 LINK OP1 G A 359 MG MG A 429 1555 1555 2.68 LINK OP2 G A 359 K K A 437 1555 1555 3.26 LINK O5' G A 359 K K A 437 1555 1555 3.12 LINK OP2 C A 372 MG MG A 409 1555 1555 2.54 LINK OP1 U A 375 MG MG A 429 1555 1555 2.81 LINK O3' U A 375 K K A 430 1555 1555 3.44 LINK O2' U A 375 K K A 430 1555 1555 3.03 LINK OP2 A A 376 K K A 430 1555 1555 3.07 LINK OP2 A A 376 K K A 435 1555 1555 3.33 LINK OP1 C A 377 MG MG A 401 1555 1555 2.55 LINK OP2 C A 377 MG MG A 429 1555 1555 2.36 LINK OP1 C A 377 K K A 437 1555 1555 2.66 LINK O5' C A 377 K K A 437 1555 1555 2.36 LINK O4' C A 377 K K A 437 1555 1555 3.04 LINK MG MG A 401 O HOH B 101 1555 1555 2.08 LINK MG MG A 404 O HOH A 505 1555 1555 2.25 LINK MG MG A 406 O HOH A 503 1555 1555 2.87 LINK MG MG A 407 O HOH A 521 1555 1555 2.08 LINK MG MG A 408 O HOH A 504 1555 1555 2.43 LINK MG MG A 409 O HOH A 510 1555 1555 2.18 LINK MG MG A 410 O HOH A 501 1555 1555 2.04 LINK MG MG A 411 O HOH A 518 1555 1555 1.82 LINK MG MG A 415 O HOH A 532 1555 1555 2.23 LINK MG MG A 416 O HOH A 537 1555 1555 2.91 LINK MG MG A 419 O HOH A 514 1555 1555 2.47 LINK MG MG A 421 O HOH A 507 1555 1555 2.29 LINK MG MG A 424 O HOH A 519 1555 1555 2.12 LINK MG MG A 424 O HOH A 525 1555 1555 2.29 LINK K K A 425 O HOH A 509 1555 1555 3.13 LINK MG MG A 429 O3' U B 0 1555 1555 2.82 LINK MG MG A 429 O2' U B 0 1555 1555 2.41 LINK MG MG A 429 O HOH B 101 1555 1555 2.73 LINK K K A 441 O HOH A 506 1555 1555 2.41 LINK K K A 441 O HOH A 526 1555 1555 2.96 LINK K K A 442 O HOH A 515 1555 1555 2.66 LINK K K A 442 O HOH A 529 1555 1555 2.14 LINK K K A 443 O HOH A 516 1555 1555 2.70 SITE 1 AC1 4 G A 358 G A 359 C A 377 HOH B 101 SITE 1 AC2 1 U A 4 SITE 1 AC3 1 G A 362 SITE 1 AC4 1 HOH A 505 SITE 1 AC5 2 U A 26 U A 65 SITE 1 AC6 4 C A 323 G A 324 G A 325 HOH A 503 SITE 1 AC7 2 U A 59 HOH A 521 SITE 1 AC8 4 A A 105 A A 106 G A 107 HOH A 504 SITE 1 AC9 2 C A 372 HOH A 510 SITE 1 AD1 4 C A 119 U A 238 G A 239 HOH A 501 SITE 1 AD2 2 A A 186 HOH A 518 SITE 1 AD3 1 A A 105 SITE 1 AD4 2 G A 136 U A 225 SITE 1 AD5 2 U A 66 A A 67 SITE 1 AD6 2 G A 284 HOH A 532 SITE 1 AD7 4 A A 181 A A 222 A A 223 HOH A 537 SITE 1 AD8 2 C A 6 A A 260 SITE 1 AD9 1 G A 169 SITE 1 AE1 3 A A 184 A A 371 HOH A 514 SITE 1 AE2 2 A A 67 G A 68 SITE 1 AE3 3 A A 154 G A 155 HOH A 507 SITE 1 AE4 1 U A 285 SITE 1 AE5 3 G A 289 A A 355 A A 356 SITE 1 AE6 2 HOH A 519 HOH A 525 SITE 1 AE7 1 G A 266 SITE 1 AE8 1 A A 283 SITE 1 AE9 1 G A 142 SITE 1 AF1 1 A A 120 SITE 1 AF2 5 G A 359 U A 375 C A 377 U B 0 SITE 2 AF2 5 HOH B 101 SITE 1 AF3 4 U A 4 G A 107 U A 375 A A 376 SITE 1 AF4 1 G A 275 SITE 1 AF5 1 G A 28 SITE 1 AF6 1 G A 80 SITE 1 AF7 1 G A 264 SITE 1 AF8 4 G A 1 U A 4 G A 5 A A 376 SITE 1 AF9 2 G A 32 G A 34 SITE 1 AG1 5 G A 288 G A 358 G A 359 A A 376 SITE 2 AG1 5 C A 377 SITE 1 AG2 2 G A 331 U A 332 SITE 1 AG3 1 G A 90 SITE 1 AG4 1 G A 320 SITE 1 AG5 5 G A 15 U A 255 U A 256 HOH A 506 SITE 2 AG5 5 HOH A 526 SITE 1 AG6 4 A A 268 G A 269 HOH A 515 HOH A 529 SITE 1 AG7 3 U A 273 G A 275 HOH A 516 SITE 1 AG8 4 C A 112 G A 113 G A 114 A A 115 SITE 1 AG9 3 G A 242 G A 243 G A 244 SITE 1 AH1 1 G A 98 SITE 1 AH2 2 U A 103 G A 104 SITE 1 AH3 3 A A 115 C A 116 G A 117 SITE 1 AH4 5 G A 48 G A 55 A A 56 A A 57 SITE 2 AH4 5 G A 58 SITE 1 AH5 4 G A 30 G A 32 A A 33 G A 34 CRYST1 88.659 95.453 224.978 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011279 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010476 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004445 0.00000