HEADER CONTRACTILE PROTEIN 11-OCT-19 6T3O TITLE CRYSTAL STRUCTURE OF THE HUMAN MYOMESIN DOMAIN 10 COMPND MOL_ID: 1; COMPND 2 MOLECULE: MYOMESIN-1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: 190 KDA CONNECTIN-ASSOCIATED PROTEIN,190 KDA TITIN- COMPND 5 ASSOCIATED PROTEIN,MYOMESIN FAMILY MEMBER 1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MYOM1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS SMALL PROTEIN DOMAIN, SCAFFOLD STRUCTURE, CONTRACTILE PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.DUSKOVA,H.PETROKOVA,P.MALY REVDAT 3 24-JAN-24 6T3O 1 REMARK REVDAT 2 29-SEP-21 6T3O 1 TITLE JRNL REVDAT 1 17-MAR-21 6T3O 0 JRNL AUTH M.KUCHAR,P.KOSZTYU,V.DANIEL LISKOVA,J.CERNY,H.PETROKOVA, JRNL AUTH 2 E.VROBLOVA,M.MALY,L.VANKOVA,M.KRUPKA,L.RASKOVA KAFKOVA, JRNL AUTH 3 P.TURANEK KNOTIGOVA,J.DUSKOVA,J.DOHNALEK,J.MASEK,J.TURANEK, JRNL AUTH 4 M.RASKA,P.MALY JRNL TITL MYOMEDIN SCAFFOLD VARIANTS TARGETED TO 10E8 HIV-1 BROADLY JRNL TITL 2 NEUTRALIZING ANTIBODY MIMIC GP41 EPITOPE AND ELICIT HIV-1 JRNL TITL 3 VIRUS-NEUTRALIZING SERA IN MICE. JRNL REF VIRULENCE V. 12 1271 2021 JRNL REFN ISSN 2150-5608 JRNL PMID 33993840 JRNL DOI 10.1080/21505594.2021.1920251 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0238 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.85 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 10572 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : 0.205 REMARK 3 R VALUE (WORKING SET) : 0.198 REMARK 3 FREE R VALUE : 0.244 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 765 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.87 REMARK 3 BIN R VALUE (WORKING SET) : 0.2890 REMARK 3 BIN FREE R VALUE SET COUNT : NULL REMARK 3 BIN FREE R VALUE : 0.3180 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 907 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 3 REMARK 3 SOLVENT ATOMS : 87 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 30.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.44 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.04000 REMARK 3 B22 (A**2) : -0.04000 REMARK 3 B33 (A**2) : 0.08000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.145 REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.086 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.418 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.955 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 932 ; 0.018 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 873 ; 0.002 ; 0.018 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1246 ; 1.995 ; 1.648 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2037 ; 1.521 ; 1.587 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 110 ; 7.547 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 54 ;34.968 ;24.444 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 185 ;18.216 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 4 ;23.221 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 116 ; 0.093 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1029 ; 0.012 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 191 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 437 ; 1.807 ; 2.451 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 436 ; 1.802 ; 2.447 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 545 ; 2.470 ; 3.672 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 546 ; 2.468 ; 3.676 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 494 ; 2.199 ; 2.705 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 492 ; 2.190 ; 2.692 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 699 ; 3.334 ; 3.959 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4122 ; 6.399 ;47.495 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4041 ; 6.322 ;46.643 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 22 A 48 REMARK 3 ORIGIN FOR THE GROUP (A): 14.3048 -0.0020 19.4933 REMARK 3 T TENSOR REMARK 3 T11: 0.1807 T22: 0.1498 REMARK 3 T33: 0.1772 T12: -0.0644 REMARK 3 T13: 0.1098 T23: -0.0445 REMARK 3 L TENSOR REMARK 3 L11: 0.0084 L22: 1.6366 REMARK 3 L33: 5.9911 L12: -0.0988 REMARK 3 L13: -0.0446 L23: 1.9005 REMARK 3 S TENSOR REMARK 3 S11: -0.0201 S12: 0.0025 S13: -0.0171 REMARK 3 S21: 0.3432 S22: -0.1971 S23: 0.2507 REMARK 3 S31: 0.6573 S32: -0.1512 S33: 0.2171 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 49 A 97 REMARK 3 ORIGIN FOR THE GROUP (A): 14.2569 8.9348 19.6684 REMARK 3 T TENSOR REMARK 3 T11: 0.0820 T22: 0.1965 REMARK 3 T33: 0.1500 T12: -0.0603 REMARK 3 T13: 0.0503 T23: -0.1177 REMARK 3 L TENSOR REMARK 3 L11: 1.9831 L22: 2.5942 REMARK 3 L33: 2.6367 L12: 0.0451 REMARK 3 L13: -0.0408 L23: 2.0189 REMARK 3 S TENSOR REMARK 3 S11: -0.0030 S12: -0.2963 S13: 0.1983 REMARK 3 S21: 0.2407 S22: -0.3901 S23: 0.3267 REMARK 3 S31: 0.2190 S32: -0.3110 S33: 0.3932 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 98 A 108 REMARK 3 ORIGIN FOR THE GROUP (A): 22.4574 5.5566 25.6296 REMARK 3 T TENSOR REMARK 3 T11: 0.0910 T22: 0.1248 REMARK 3 T33: 0.0960 T12: 0.0301 REMARK 3 T13: 0.0227 T23: -0.0490 REMARK 3 L TENSOR REMARK 3 L11: 1.8106 L22: 1.1014 REMARK 3 L33: 11.8060 L12: -0.0185 REMARK 3 L13: -4.4789 L23: -0.6415 REMARK 3 S TENSOR REMARK 3 S11: -0.2200 S12: -0.1833 S13: -0.0147 REMARK 3 S21: 0.1723 S22: 0.0768 S23: 0.0588 REMARK 3 S31: 0.4248 S32: 0.2603 S33: 0.1432 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 109 A 130 REMARK 3 ORIGIN FOR THE GROUP (A): 17.0075 3.5627 1.5526 REMARK 3 T TENSOR REMARK 3 T11: 0.0468 T22: 0.0238 REMARK 3 T33: 0.1038 T12: 0.0098 REMARK 3 T13: 0.0094 T23: 0.0162 REMARK 3 L TENSOR REMARK 3 L11: 6.2915 L22: 3.9195 REMARK 3 L33: 4.8334 L12: 2.5799 REMARK 3 L13: 2.9114 L23: 2.3768 REMARK 3 S TENSOR REMARK 3 S11: -0.0961 S12: 0.2000 S13: 0.1473 REMARK 3 S21: -0.2331 S22: 0.0203 S23: 0.3189 REMARK 3 S31: -0.0690 S32: 0.1465 S33: 0.0757 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6T3O COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 11-OCT-19. REMARK 100 THE DEPOSITION ID IS D_1292102549. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-MAY-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.918409 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 300K REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10591 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 42.850 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 5.200 REMARK 200 R MERGE (I) : 0.02500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 2.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.84 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 5.40 REMARK 200 R MERGE FOR SHELL (I) : 0.57200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 2Y23 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.12 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.09 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M CITRATE/PHOSPHATE BUFFER PH 5.4, REMARK 280 30 % PEG3350, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 31.41050 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 29.29950 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 29.29950 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 47.11575 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 29.29950 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 29.29950 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 15.70525 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 29.29950 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 29.29950 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 47.11575 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 29.29950 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 29.29950 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 15.70525 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 31.41050 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 120 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6670 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 1.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 N2 AZI A 201 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 SER A 3 REMARK 465 SER A 4 REMARK 465 HIS A 5 REMARK 465 HIS A 6 REMARK 465 HIS A 7 REMARK 465 HIS A 8 REMARK 465 HIS A 9 REMARK 465 HIS A 10 REMARK 465 SER A 11 REMARK 465 SER A 12 REMARK 465 GLY A 13 REMARK 465 LEU A 14 REMARK 465 VAL A 15 REMARK 465 PRO A 16 REMARK 465 ARG A 17 REMARK 465 GLY A 18 REMARK 465 SER A 19 REMARK 465 HIS A 20 REMARK 465 MET A 21 REMARK 465 GLN A 131 REMARK 465 GLY A 132 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 108 77.07 -103.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AZI A 201 DBREF 6T3O A 22 132 UNP P52179 MYOM1_HUMAN 1247 1357 SEQADV 6T3O MET A 1 UNP P52179 INITIATING METHIONINE SEQADV 6T3O GLY A 2 UNP P52179 EXPRESSION TAG SEQADV 6T3O SER A 3 UNP P52179 EXPRESSION TAG SEQADV 6T3O SER A 4 UNP P52179 EXPRESSION TAG SEQADV 6T3O HIS A 5 UNP P52179 EXPRESSION TAG SEQADV 6T3O HIS A 6 UNP P52179 EXPRESSION TAG SEQADV 6T3O HIS A 7 UNP P52179 EXPRESSION TAG SEQADV 6T3O HIS A 8 UNP P52179 EXPRESSION TAG SEQADV 6T3O HIS A 9 UNP P52179 EXPRESSION TAG SEQADV 6T3O HIS A 10 UNP P52179 EXPRESSION TAG SEQADV 6T3O SER A 11 UNP P52179 EXPRESSION TAG SEQADV 6T3O SER A 12 UNP P52179 EXPRESSION TAG SEQADV 6T3O GLY A 13 UNP P52179 EXPRESSION TAG SEQADV 6T3O LEU A 14 UNP P52179 EXPRESSION TAG SEQADV 6T3O VAL A 15 UNP P52179 EXPRESSION TAG SEQADV 6T3O PRO A 16 UNP P52179 EXPRESSION TAG SEQADV 6T3O ARG A 17 UNP P52179 EXPRESSION TAG SEQADV 6T3O GLY A 18 UNP P52179 EXPRESSION TAG SEQADV 6T3O SER A 19 UNP P52179 EXPRESSION TAG SEQADV 6T3O HIS A 20 UNP P52179 EXPRESSION TAG SEQADV 6T3O MET A 21 UNP P52179 EXPRESSION TAG SEQRES 1 A 132 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 132 LEU VAL PRO ARG GLY SER HIS MET MLZ SER GLU LEU ALA SEQRES 3 A 132 VAL GLU ILE LEU GLU LYS GLY GLN VAL ARG PHE TRP MET SEQRES 4 A 132 GLN ALA GLU LYS LEU SER GLY ASN ALA LYS VAL ASN TYR SEQRES 5 A 132 ILE PHE ASN GLU LYS GLU ILE PHE GLU GLY PRO LYS TYR SEQRES 6 A 132 LYS MET HIS ILE ASP ARG ASN THR GLY ILE ILE GLU MET SEQRES 7 A 132 PHE MET GLU LYS LEU GLN ASP GLU ASP GLU GLY THR TYR SEQRES 8 A 132 THR PHE GLN LEU GLN ASP GLY LYS ALA THR ASN HIS SER SEQRES 9 A 132 THR VAL VAL LEU VAL GLY ASP VAL PHE LYS LYS LEU GLN SEQRES 10 A 132 LYS GLU ALA GLU PHE GLN ARG GLN GLU TRP ILE ARG LYS SEQRES 11 A 132 GLN GLY MODRES 6T3O MLZ A 22 LYS MODIFIED RESIDUE HET MLZ A 22 10 HET AZI A 201 3 HETNAM MLZ N-METHYL-LYSINE HETNAM AZI AZIDE ION FORMUL 1 MLZ C7 H16 N2 O2 FORMUL 2 AZI N3 1- FORMUL 3 HOH *87(H2 O) HELIX 1 AA1 GLN A 84 GLU A 88 5 5 HELIX 2 AA2 GLY A 110 LYS A 130 1 21 SHEET 1 AA1 4 SER A 23 ILE A 29 0 SHEET 2 AA1 4 VAL A 35 GLN A 40 -1 O ARG A 36 N GLU A 28 SHEET 3 AA1 4 ILE A 75 MET A 80 -1 O MET A 78 N PHE A 37 SHEET 4 AA1 4 LYS A 66 ILE A 69 -1 N HIS A 68 O GLU A 77 SHEET 1 AA2 4 LYS A 57 ILE A 59 0 SHEET 2 AA2 4 LYS A 49 PHE A 54 -1 N PHE A 54 O LYS A 57 SHEET 3 AA2 4 GLY A 89 ASP A 97 -1 O GLN A 96 N LYS A 49 SHEET 4 AA2 4 ALA A 100 LEU A 108 -1 O ASN A 102 N LEU A 95 LINK C MLZ A 22 N SER A 23 1555 1555 1.33 SITE 1 AC1 3 LYS A 82 GLU A 121 ARG A 124 CRYST1 58.599 58.599 62.821 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017065 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017065 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015918 0.00000 HETATM 1 N MLZ A 22 18.404 -7.817 27.112 1.00 68.85 N ANISOU 1 N MLZ A 22 12084 7070 7005 174 1194 -230 N HETATM 2 CA MLZ A 22 18.610 -6.376 26.824 1.00 62.97 C ANISOU 2 CA MLZ A 22 10733 6647 6545 160 1128 -226 C HETATM 3 CB MLZ A 22 19.221 -5.649 28.029 1.00 62.72 C ANISOU 3 CB MLZ A 22 10640 6697 6492 284 1059 -214 C HETATM 4 CG MLZ A 22 20.588 -4.991 27.844 1.00 62.78 C ANISOU 4 CG MLZ A 22 10333 6992 6527 589 866 -207 C HETATM 5 CD MLZ A 22 20.677 -3.592 28.479 1.00 64.73 C ANISOU 5 CD MLZ A 22 10231 7424 6937 491 851 -207 C HETATM 6 CE MLZ A 22 20.291 -2.457 27.535 1.00 62.74 C ANISOU 6 CE MLZ A 22 9517 7366 6955 298 874 -208 C HETATM 7 NZ MLZ A 22 20.300 -1.134 28.181 1.00 64.45 N ANISOU 7 NZ MLZ A 22 9485 7710 7293 194 869 -208 N HETATM 8 CM MLZ A 22 19.012 -0.422 28.307 1.00 58.99 C ANISOU 8 CM MLZ A 22 8688 6955 6767 -87 1001 -218 C HETATM 9 C MLZ A 22 19.443 -6.242 25.552 1.00 62.00 C ANISOU 9 C MLZ A 22 10321 6738 6498 374 989 -215 C HETATM 10 O MLZ A 22 20.256 -7.100 25.207 1.00 63.56 O ANISOU 10 O MLZ A 22 10738 6901 6512 657 890 -209 O