HEADER VIRAL PROTEIN 11-OCT-19 6T3Z TITLE CRYSTAL STRUCTURE OF THE TRUNCATED EBV BFRF1-BFLF2 NUCLEAR EGRESS TITLE 2 COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: NUCLEAR EGRESS PROTEIN 2,NUCLEAR EGRESS PROTEIN 1; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: EPSTEIN-BARR VIRUS (STRAIN GD1); SOURCE 3 ORGANISM_COMMON: HHV-4; SOURCE 4 ORGANISM_TAXID: 10376; SOURCE 5 STRAIN: GD1; SOURCE 6 GENE: BFRF1, NEC2, HHV4-K4123MI_BFRF1, NEC1; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS NUCLEAR EGRESS COMPLEX, EPSTEIN-BARR VIRUS, GAMMA-HERPESVIRAL CORE KEYWDS 2 NEC, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR Y.A.MULLER REVDAT 3 24-JAN-24 6T3Z 1 REMARK REVDAT 2 18-MAR-20 6T3Z 1 JRNL REVDAT 1 12-FEB-20 6T3Z 0 JRNL AUTH Y.A.MULLER,S.HAGE,S.ALKHASHROM,T.HOLLRIEGL,S.WEIGERT, JRNL AUTH 2 S.DOLLES,K.HOF,S.A.WALZER,C.EGERER-SIEBER,M.CONRAD,S.HOLST, JRNL AUTH 3 J.LOSING,E.SONNTAG,H.STICHT,J.EICHLER,M.MARSCHALL JRNL TITL HIGH-RESOLUTION CRYSTAL STRUCTURES OF TWO PROTOTYPICAL BETA- JRNL TITL 2 AND GAMMA-HERPESVIRAL NUCLEAR EGRESS COMPLEXES UNRAVEL THE JRNL TITL 3 DETERMINANTS OF SUBFAMILY SPECIFICITY. JRNL REF J.BIOL.CHEM. V. 295 3189 2020 JRNL REFN ESSN 1083-351X JRNL PMID 31980459 JRNL DOI 10.1074/JBC.RA119.011546 REMARK 2 REMARK 2 RESOLUTION. 1.56 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.11.1_2575 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.56 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.23 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.344 REMARK 3 COMPLETENESS FOR RANGE (%) : 59.4 REMARK 3 NUMBER OF REFLECTIONS : 24230 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.214 REMARK 3 R VALUE (WORKING SET) : 0.212 REMARK 3 FREE R VALUE : 0.242 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.714 REMARK 3 FREE R VALUE TEST SET COUNT : 1869 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.2000 - 3.6642 1.00 3240 252 0.1842 0.1964 REMARK 3 2 3.6642 - 2.9086 1.00 3009 246 0.2026 0.2468 REMARK 3 3 2.9086 - 2.5409 1.00 2924 257 0.2281 0.2781 REMARK 3 4 2.5409 - 2.3086 1.00 2909 243 0.2290 0.2616 REMARK 3 5 2.3086 - 2.1432 1.00 2857 264 0.2365 0.2816 REMARK 3 6 2.1432 - 2.0168 0.85 2435 205 0.2633 0.2801 REMARK 3 7 2.0168 - 1.9158 0.56 1594 133 0.2457 0.3052 REMARK 3 8 1.9158 - 1.8324 0.41 1168 85 0.2837 0.2889 REMARK 3 9 1.8324 - 1.7619 0.32 898 79 0.2896 0.2879 REMARK 3 10 1.7619 - 1.7011 0.23 666 52 0.2943 0.3160 REMARK 3 11 1.7011 - 1.6479 0.15 409 34 0.3102 0.3200 REMARK 3 12 1.6479 - 1.6008 0.07 183 15 0.3987 0.5876 REMARK 3 13 1.6008 - 1.5587 0.02 69 4 0.5313 0.4589 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.178 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 35.298 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 26.99 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 50.01 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 1788 REMARK 3 ANGLE : 0.788 2412 REMARK 3 CHIRALITY : 0.048 268 REMARK 3 PLANARITY : 0.005 313 REMARK 3 DIHEDRAL : 13.359 1092 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN 'A' AND RESID 2 THROUGH 30) REMARK 3 ORIGIN FOR THE GROUP (A): 7.9320 46.0536 137.7147 REMARK 3 T TENSOR REMARK 3 T11: 0.3928 T22: 0.0983 REMARK 3 T33: 0.2241 T12: 0.0671 REMARK 3 T13: -0.0887 T23: -0.1879 REMARK 3 L TENSOR REMARK 3 L11: 6.9699 L22: 8.2376 REMARK 3 L33: 8.7655 L12: 2.9728 REMARK 3 L13: 1.1311 L23: 3.1600 REMARK 3 S TENSOR REMARK 3 S11: 0.0422 S12: -0.3508 S13: 0.2206 REMARK 3 S21: 0.4888 S22: 0.1394 S23: -0.2124 REMARK 3 S31: -0.0311 S32: 0.2917 S33: -0.0423 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN 'A' AND RESID 31 THROUGH 41) REMARK 3 ORIGIN FOR THE GROUP (A): 19.2711 36.4518 144.0776 REMARK 3 T TENSOR REMARK 3 T11: 1.3529 T22: 0.9185 REMARK 3 T33: 1.0688 T12: 0.5491 REMARK 3 T13: -0.2152 T23: -0.3736 REMARK 3 L TENSOR REMARK 3 L11: 4.6654 L22: 8.1862 REMARK 3 L33: 4.0853 L12: -5.9913 REMARK 3 L13: -4.2813 L23: 5.2195 REMARK 3 S TENSOR REMARK 3 S11: -0.1435 S12: -0.5801 S13: 0.2508 REMARK 3 S21: 0.9205 S22: 0.4204 S23: 0.5451 REMARK 3 S31: -0.1230 S32: 0.1865 S33: -0.2621 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN 'A' AND RESID 42 THROUGH 158) REMARK 3 ORIGIN FOR THE GROUP (A): 3.0977 32.0635 133.7295 REMARK 3 T TENSOR REMARK 3 T11: 0.6107 T22: 0.1239 REMARK 3 T33: 0.2980 T12: -0.0555 REMARK 3 T13: -0.0787 T23: -0.1144 REMARK 3 L TENSOR REMARK 3 L11: 0.9353 L22: 2.0219 REMARK 3 L33: 1.8935 L12: 0.4100 REMARK 3 L13: -0.1419 L23: 0.7410 REMARK 3 S TENSOR REMARK 3 S11: -0.0433 S12: -0.0781 S13: -0.2138 REMARK 3 S21: 0.6299 S22: 0.2700 S23: -0.2370 REMARK 3 S31: 0.7521 S32: -0.0459 S33: -0.0690 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN 'A' AND RESID 159 THROUGH 193) REMARK 3 ORIGIN FOR THE GROUP (A): -1.1386 41.1615 121.2230 REMARK 3 T TENSOR REMARK 3 T11: 0.2815 T22: 0.1369 REMARK 3 T33: 0.1827 T12: -0.0368 REMARK 3 T13: 0.0161 T23: -0.0989 REMARK 3 L TENSOR REMARK 3 L11: 1.9595 L22: 4.3696 REMARK 3 L33: 6.1506 L12: 0.6878 REMARK 3 L13: -0.1951 L23: -1.4319 REMARK 3 S TENSOR REMARK 3 S11: -0.0286 S12: 0.3389 S13: 0.2543 REMARK 3 S21: -0.1644 S22: 0.3183 S23: 0.3886 REMARK 3 S31: -0.0320 S32: -0.5967 S33: -0.2745 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN 'A' AND RESID 1078 THROUGH 1089) REMARK 3 ORIGIN FOR THE GROUP (A): 11.7244 42.6033 114.8660 REMARK 3 T TENSOR REMARK 3 T11: 0.3007 T22: 0.2856 REMARK 3 T33: 0.3030 T12: -0.1379 REMARK 3 T13: 0.0536 T23: -0.2086 REMARK 3 L TENSOR REMARK 3 L11: 4.6135 L22: 5.7204 REMARK 3 L33: 3.4060 L12: 0.7359 REMARK 3 L13: 3.1178 L23: 2.3929 REMARK 3 S TENSOR REMARK 3 S11: -0.2272 S12: 0.7902 S13: -0.1552 REMARK 3 S21: -0.5143 S22: 0.5995 S23: -0.8556 REMARK 3 S31: -0.3783 S32: 1.1503 S33: -0.2943 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN 'A' AND RESID 1090 THROUGH 1102) REMARK 3 ORIGIN FOR THE GROUP (A): 3.4826 48.8704 123.5921 REMARK 3 T TENSOR REMARK 3 T11: 0.2855 T22: 0.1273 REMARK 3 T33: 0.2046 T12: -0.0212 REMARK 3 T13: 0.0240 T23: -0.0892 REMARK 3 L TENSOR REMARK 3 L11: 8.1792 L22: 7.6734 REMARK 3 L33: 2.4776 L12: 4.8102 REMARK 3 L13: 3.2787 L23: -0.4448 REMARK 3 S TENSOR REMARK 3 S11: -0.0657 S12: -0.3005 S13: 0.4742 REMARK 3 S21: 0.0313 S22: 0.1851 S23: 0.1002 REMARK 3 S31: -0.4036 S32: -0.0684 S33: -0.0418 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN 'A' AND RESID 1103 THROUGH 1110) REMARK 3 ORIGIN FOR THE GROUP (A): -7.8674 39.2323 120.6164 REMARK 3 T TENSOR REMARK 3 T11: 0.2247 T22: 0.4417 REMARK 3 T33: 0.5761 T12: -0.1060 REMARK 3 T13: -0.0411 T23: -0.0598 REMARK 3 L TENSOR REMARK 3 L11: 2.6031 L22: 2.1685 REMARK 3 L33: 6.6284 L12: 2.3584 REMARK 3 L13: -1.7902 L23: -2.0359 REMARK 3 S TENSOR REMARK 3 S11: 0.1528 S12: 0.3899 S13: 0.5931 REMARK 3 S21: -0.3917 S22: -0.1717 S23: 2.1628 REMARK 3 S31: 0.3208 S32: -0.6702 S33: 0.0632 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6T3Z COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 11-OCT-19. REMARK 100 THE DEPOSITION ID IS D_1292104814. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-MAY-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9184 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40577 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.558 REMARK 200 RESOLUTION RANGE LOW (A) : 47.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 59.6 REMARK 200 DATA REDUNDANCY : 38.00 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.56 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.62 REMARK 200 COMPLETENESS FOR SHELL (%) : 3.2 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5D5N REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.59 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.59 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: THE PROTEIN WAS DISSOLVED IN A BUFFER REMARK 280 CONSISTING OF 50 MM TRISHCL, 150 MM NACL, PH 7.5 AND REMARK 280 CONCENTRATED TO VALUES BETWEEN 10-15 MG/ML. DIFFRACTION QUALITY REMARK 280 CRYSTALS OF BFRF1::BFLF2 WERE OBTAINED AT 4 DEGREE C WITH 0.2 M REMARK 280 SODIUM MALONATE, PH 4.5, 20% PEG 3350 AS A RESERVOIR SOLUTION., REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 88.45667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 176.91333 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 132.68500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 221.14167 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 44.22833 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 88.45667 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 176.91333 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 221.14167 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 132.68500 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 44.22833 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 130 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11440 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 1.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1305 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1339 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1388 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 SER A 32 REMARK 465 SER A 99 REMARK 465 GLY A 100 REMARK 465 LEU A 101 REMARK 465 ARG A 102 REMARK 465 SER A 103 REMARK 465 GLY A 104 REMARK 465 GLN A 105 REMARK 465 GLY A 1074 REMARK 465 SER A 1075 REMARK 465 GLY A 1076 REMARK 465 SER A 1077 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 21 -159.27 -121.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MLI A 1201 DBREF 6T3Z A 1 192 UNP V5KTU9 V5KTU9_EBVG 1 192 DBREF1 6T3Z A 1078 1110 UNP A0A2S1N254_EBVG DBREF2 6T3Z A A0A2S1N254 78 110 SEQADV 6T3Z GLY A -2 UNP V5KTU9 EXPRESSION TAG SEQADV 6T3Z SER A -1 UNP V5KTU9 EXPRESSION TAG SEQADV 6T3Z HIS A 0 UNP V5KTU9 EXPRESSION TAG SEQADV 6T3Z GLY A 193 UNP V5KTU9 LINKER SEQADV 6T3Z GLY A 1074 UNP V5KTU9 LINKER SEQADV 6T3Z SER A 1075 UNP V5KTU9 LINKER SEQADV 6T3Z GLY A 1076 UNP V5KTU9 LINKER SEQADV 6T3Z SER A 1077 UNP V5KTU9 LINKER SEQRES 1 A 233 GLY SER HIS MET ALA SER PRO GLU GLU ARG LEU LEU ASP SEQRES 2 A 233 GLU LEU ASN ASN VAL ILE VAL SER PHE LEU CYS ASP SER SEQRES 3 A 233 GLY SER LEU GLU VAL GLU ARG CYS SER GLY ALA HIS VAL SEQRES 4 A 233 PHE SER ARG GLY SER SER GLN PRO LEU CYS THR VAL LYS SEQRES 5 A 233 LEU ARG HIS GLY GLN ILE TYR HIS LEU GLU PHE VAL TYR SEQRES 6 A 233 LYS PHE LEU ALA PHE LYS LEU LYS ASN CYS ASN TYR PRO SEQRES 7 A 233 SER SER PRO VAL PHE VAL ILE SER ASN ASN GLY LEU ALA SEQRES 8 A 233 THR THR LEU ARG CYS PHE LEU HIS GLU PRO SER GLY LEU SEQRES 9 A 233 ARG SER GLY GLN SER GLY PRO CYS LEU GLY LEU SER THR SEQRES 10 A 233 ASP VAL ASP LEU PRO LYS ASN SER ILE ILE MET LEU GLY SEQRES 11 A 233 GLN ASP ASP PHE ILE LYS PHE LYS SER PRO LEU VAL PHE SEQRES 12 A 233 PRO ALA GLU LEU ASP LEU LEU LYS SER MET VAL VAL CYS SEQRES 13 A 233 ARG ALA TYR ILE THR GLU HIS ARG THR THR MET GLN PHE SEQRES 14 A 233 LEU VAL PHE GLN ALA ALA ASN ALA GLN LYS ALA SER ARG SEQRES 15 A 233 VAL MET ASP MET ILE SER ASP MET SER GLN GLN LEU SER SEQRES 16 A 233 GLY GLY SER GLY SER ASP ARG SER HIS PHE SER LEU ARG SEQRES 17 A 233 ASP PHE PHE ARG GLY ILE SER ALA ASN PHE GLU LEU GLY SEQRES 18 A 233 LYS ASP PHE LEU ARG GLU MET ASN THR PRO ILE HIS HET MLI A1201 9 HETNAM MLI MALONATE ION FORMUL 2 MLI C3 H2 O4 2- FORMUL 3 HOH *101(H2 O) HELIX 1 AA1 ALA A 2 LEU A 20 1 19 HELIX 2 AA2 HIS A 57 CYS A 72 1 16 HELIX 3 AA3 ASP A 129 SER A 136 1 8 HELIX 4 AA4 PHE A 140 LEU A 144 5 5 HELIX 5 AA5 ASN A 173 GLY A 193 1 21 HELIX 6 AA6 SER A 1083 ASN A 1094 1 12 HELIX 7 AA7 ASN A 1094 GLU A 1104 1 11 SHEET 1 AA1 6 GLU A 27 ARG A 30 0 SHEET 2 AA1 6 CYS A 46 LYS A 49 -1 O THR A 47 N GLU A 29 SHEET 3 AA1 6 THR A 89 PHE A 94 -1 O LEU A 91 N VAL A 48 SHEET 4 AA1 6 VAL A 79 ASN A 84 -1 N VAL A 81 O ARG A 92 SHEET 5 AA1 6 SER A 122 LEU A 126 -1 O LEU A 126 N PHE A 80 SHEET 6 AA1 6 CYS A 109 LEU A 110 1 N LEU A 110 O ILE A 123 SHEET 1 AA2 4 ILE A 55 TYR A 56 0 SHEET 2 AA2 4 SER A 149 THR A 158 -1 O CYS A 153 N TYR A 56 SHEET 3 AA2 4 ARG A 161 ALA A 171 -1 O GLN A 165 N ARG A 154 SHEET 4 AA2 4 ASP A 115 ASP A 117 -1 N VAL A 116 O MET A 164 SHEET 1 AA3 4 ILE A 55 TYR A 56 0 SHEET 2 AA3 4 SER A 149 THR A 158 -1 O CYS A 153 N TYR A 56 SHEET 3 AA3 4 ARG A 161 ALA A 171 -1 O GLN A 165 N ARG A 154 SHEET 4 AA3 4 MET A1105 PRO A1108 -1 O THR A1107 N GLN A 170 SITE 1 AC1 5 ASP A 10 GLU A 11 ASN A 14 LYS A 68 SITE 2 AC1 5 SER A1092 CRYST1 59.313 59.313 265.370 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016860 0.009734 0.000000 0.00000 SCALE2 0.000000 0.019468 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003768 0.00000