HEADER PROTEIN TRANSPORT 14-OCT-19 6T4H TITLE CRYSTAL STRUCTURE OF THE ACCESSORY TRANSLOCATION ATPASE, SECA2, FROM TITLE 2 CLOSTRIDIUM DIFFICILE, IN COMPLEX WITH ADENOSINE-5'-(GAMMA-THIO)- TITLE 3 TRIPHOSPHATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN TRANSLOCASE SUBUNIT SECA 2; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PEPTOCLOSTRIDIUM DIFFICILE (STRAIN 630); SOURCE 3 ORGANISM_TAXID: 272563; SOURCE 4 STRAIN: 630; SOURCE 5 GENE: SECA2, CD630_27920; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS SECA2, ATPASE, PATHOGENESIS, PROTEIN TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR N.LINDIC,J.LOBODA,A.USENIK,D.TURK REVDAT 3 31-JAN-24 6T4H 1 REMARK REVDAT 2 26-OCT-22 6T4H 1 JRNL REMARK REVDAT 1 18-NOV-20 6T4H 0 JRNL AUTH N.LINDIC,J.LOBODA,A.USENIK,R.VIDMAR,D.TURK JRNL TITL THE STRUCTURE OF CLOSTRIDIOIDES DIFFICILE SECA2 ATPASE JRNL TITL 2 EXPOSES REGIONS RESPONSIBLE FOR DIFFERENTIAL TARGET JRNL TITL 3 RECOGNITION OF THE SECA1 AND SECA2-DEPENDENT SYSTEMS. JRNL REF INT J MOL SCI V. 21 2020 JRNL REFN ESSN 1422-0067 JRNL PMID 32858965 JRNL DOI 10.3390/IJMS21176153 REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : MAIN REMARK 3 AUTHORS : TURK REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.34 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 21017 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : NONE REMARK 3 R VALUE (WORKING SET) : 0.335 REMARK 3 FREE R VALUE : 0.380 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 100.00 REMARK 3 FREE R VALUE TEST SET COUNT : 21016 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 25 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.01 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 1.00 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2253 REMARK 3 BIN R VALUE (WORKING SET) : 0.4234 REMARK 3 BIN FREE R VALUE : 0.4798 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 100.0 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 2253 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6187 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 31 REMARK 3 SOLVENT ATOMS : 14 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 0.75 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 11.22200 REMARK 3 B22 (A**2) : -11.57500 REMARK 3 B33 (A**2) : 0.35300 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6T4H COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 14-OCT-19. REMARK 100 THE DEPOSITION ID IS D_1292104450. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-JUN-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ELETTRA REMARK 200 BEAMLINE : 11.2C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29038 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.590 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 6.320 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.59 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.75 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 6SXH REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.33 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.58 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M BIS-TRIS PROPANE PH 8.3, 0.2 M REMARK 280 SODIUM ACETATE, 18% W/V PEG3350, 4 MM MGCL2, 2 MM ATP-GAMMA-S, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 295.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 41.47000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 57.34000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 48.42000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 57.34000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 41.47000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 48.42000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -9 REMARK 465 SER A -8 REMARK 465 VAL A -7 REMARK 465 ILE A -6 REMARK 465 ASP A -5 REMARK 465 SER A -4 REMARK 465 ILE A -3 REMARK 465 LEU A -2 REMARK 465 ASP A -1 REMARK 465 LYS A 0 REMARK 475 REMARK 475 ZERO OCCUPANCY RESIDUES REMARK 475 THE FOLLOWING RESIDUES WERE MODELED WITH ZERO OCCUPANCY. REMARK 475 THE LOCATION AND PROPERTIES OF THESE RESIDUES MAY NOT REMARK 475 BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 475 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE) REMARK 475 M RES C SSEQI REMARK 475 ASP A 216 REMARK 475 GLY A 217 REMARK 475 ASN A 336 REMARK 475 GLU A 337 REMARK 475 LYS A 733 REMARK 475 SER A 734 REMARK 475 TYR A 735 REMARK 475 ALA A 736 REMARK 475 GLN A 737 REMARK 475 LYS A 738 REMARK 475 ASP A 739 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLN A 4 OE1 NE2 REMARK 480 LYS A 7 CE NZ REMARK 480 LYS A 8 CE NZ REMARK 480 ASN A 10 CG OD1 ND2 REMARK 480 SER A 22 OG REMARK 480 SER A 27 OG REMARK 480 GLU A 61 CD OE1 OE2 REMARK 480 LYS A 96 NZ REMARK 480 LYS A 155 CD CE NZ REMARK 480 SER A 184 OG REMARK 480 ARG A 208 CG CD NE CZ NH1 NH2 REMARK 480 LEU A 221 CG CD1 CD2 REMARK 480 LYS A 232 CD CE NZ REMARK 480 LYS A 235 CB CG CD CE NZ REMARK 480 GLU A 236 CG CD OE1 OE2 REMARK 480 GLU A 237 CG CD OE1 OE2 REMARK 480 GLU A 240 OE1 OE2 REMARK 480 SER A 260 OG REMARK 480 ASN A 266 CG OD1 ND2 REMARK 480 LYS A 335 CG CD CE NZ REMARK 480 SER A 338 OG REMARK 480 LYS A 339 CG CD CE NZ REMARK 480 LYS A 355 CG CD CE NZ REMARK 480 SER A 372 OG REMARK 480 ARG A 385 CZ NH1 NH2 REMARK 480 SER A 427 OG REMARK 480 LYS A 430 CG CD CE NZ REMARK 480 LYS A 433 CE NZ REMARK 480 LYS A 436 CD CE NZ REMARK 480 LYS A 440 CE NZ REMARK 480 GLU A 458 CG CD OE1 OE2 REMARK 480 LYS A 489 CD CE NZ REMARK 480 GLU A 490 CG CD OE1 OE2 REMARK 480 LYS A 552 CE NZ REMARK 480 SER A 567 OG REMARK 480 GLU A 609 CD OE1 OE2 REMARK 480 GLU A 617 CG CD OE1 OE2 REMARK 480 GLU A 633 CD OE1 OE2 REMARK 480 SER A 655 OG REMARK 480 LYS A 670 CG CD CE NZ REMARK 480 LYS A 671 CG CD CE NZ REMARK 480 LYS A 699 NZ REMARK 480 LYS A 742 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE1 GLN A 4 OE1 GLU A 538 4446 0.90 REMARK 500 OD1 ASP A 150 H ASN A 299 3545 0.98 REMARK 500 CD GLN A 4 OE1 GLU A 538 4446 1.34 REMARK 500 OE2 GLU A 129 HZ1 LYS A 232 3545 1.60 REMARK 500 OE1 GLN A 4 CD GLU A 538 4446 1.68 REMARK 500 OD1 ASP A 150 N ASN A 299 3545 1.89 REMARK 500 OE2 GLU A 307 CD2 LEU A 553 2454 1.92 REMARK 500 OG1 THR A 265 OE2 GLU A 621 4545 2.10 REMARK 500 OE1 GLN A 4 CB GLU A 538 4446 2.11 REMARK 500 OE2 GLU A 371 CE LYS A 440 4446 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 2 25.52 42.25 REMARK 500 GLU A 20 -61.83 -25.82 REMARK 500 GLU A 46 141.43 -13.78 REMARK 500 LEU A 52 -57.24 -15.18 REMARK 500 LYS A 64 -3.94 -58.87 REMARK 500 MET A 69 78.95 -52.41 REMARK 500 LYS A 86 -154.22 -117.03 REMARK 500 ALA A 88 76.47 -118.22 REMARK 500 PRO A 181 -92.26 -74.64 REMARK 500 GLN A 188 -155.22 -62.38 REMARK 500 LEU A 191 78.15 -68.34 REMARK 500 LEU A 203 -76.89 -59.94 REMARK 500 ALA A 207 -47.14 -16.10 REMARK 500 VAL A 234 153.17 -43.70 REMARK 500 ASP A 242 93.66 -164.17 REMARK 500 THR A 251 -178.67 -65.72 REMARK 500 THR A 265 79.74 -119.72 REMARK 500 ASN A 266 -58.98 -170.88 REMARK 500 LEU A 267 175.37 48.78 REMARK 500 THR A 268 -33.20 68.06 REMARK 500 ASN A 272 -10.36 112.57 REMARK 500 ILE A 273 -38.38 -31.18 REMARK 500 ASP A 292 1.23 57.81 REMARK 500 TYR A 295 164.77 59.16 REMARK 500 ASN A 299 -147.62 42.90 REMARK 500 THR A 309 -30.88 -140.81 REMARK 500 ASP A 320 35.09 20.60 REMARK 500 ASN A 336 70.24 -107.36 REMARK 500 SER A 338 84.36 43.50 REMARK 500 MET A 341 -60.54 -103.71 REMARK 500 VAL A 344 133.15 -176.12 REMARK 500 LEU A 352 37.41 -67.75 REMARK 500 ALA A 363 -29.93 -150.38 REMARK 500 SER A 372 44.15 -76.89 REMARK 500 ILE A 373 -56.14 -164.43 REMARK 500 ASN A 384 -72.12 -56.39 REMARK 500 HIS A 393 -175.32 -53.34 REMARK 500 THR A 399 120.58 63.64 REMARK 500 ARG A 418 94.38 69.16 REMARK 500 GLN A 419 149.22 -171.16 REMARK 500 VAL A 426 40.48 -156.41 REMARK 500 SER A 427 141.95 175.63 REMARK 500 ASN A 449 71.97 -102.48 REMARK 500 ALA A 450 83.74 2.98 REMARK 500 LYS A 451 -40.37 -147.14 REMARK 500 HIS A 453 -31.56 -36.92 REMARK 500 LEU A 466 -118.13 19.22 REMARK 500 ARG A 478 -74.22 -84.47 REMARK 500 ILE A 482 74.98 -101.77 REMARK 500 HIS A 509 -173.17 -60.66 REMARK 500 REMARK 500 THIS ENTRY HAS 76 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AGS A 801 DBREF 6T4H A -9 771 UNP Q183M9 SECA2_PEPD6 1 781 SEQRES 1 A 781 MET SER VAL ILE ASP SER ILE LEU ASP LYS ALA ASP GLU SEQRES 2 A 781 GLN GLU ILE LYS LYS LEU ASN VAL ILE VAL ASP LYS ILE SEQRES 3 A 781 ASP ALA LEU GLU ASP SER MET LYS ASN LEU SER TYR GLU SEQRES 4 A 781 GLU LEU LYS ASP MET THR ALA ILE PHE LYS ASN ARG LEU SEQRES 5 A 781 LYS LYS GLY GLU THR LEU ASP ASP ILE LEU PRO GLU ALA SEQRES 6 A 781 PHE ALA VAL VAL ARG GLU VAL SER LYS ARG LYS LEU GLY SEQRES 7 A 781 MET ARG GLN TYR ARG VAL GLN LEU ILE GLY GLY ILE VAL SEQRES 8 A 781 ILE HIS GLN GLY LYS ILE ALA GLU MET LYS THR GLY GLU SEQRES 9 A 781 GLY LYS THR LEU VAL GLU VAL ALA PRO VAL TYR LEU ASN SEQRES 10 A 781 ALA LEU THR GLY LYS GLY VAL HIS VAL ILE THR VAL ASN SEQRES 11 A 781 ASP TYR LEU ALA GLU ARG ASP LYS GLU LEU MET SER PRO SEQRES 12 A 781 VAL TYR GLU SER LEU GLY MET THR VAL GLY VAL ILE ILE SEQRES 13 A 781 SER ASN GLN ASP PRO ASN ILE ARG LYS GLN GLN TYR LYS SEQRES 14 A 781 CYS ASP ILE THR TYR GLY THR ASN SER GLU PHE GLY PHE SEQRES 15 A 781 ASP TYR LEU ARG ASP ASN MET VAL PRO ASP LEU SER HIS SEQRES 16 A 781 LYS VAL GLN ARG GLU LEU ASN PHE ALA ILE VAL ASP GLU SEQRES 17 A 781 VAL ASP SER ILE LEU ILE ASP GLU ALA ARG THR PRO LEU SEQRES 18 A 781 ILE ILE ALA GLY ASP GLY ASP GLU ASP LEU LYS LEU TYR SEQRES 19 A 781 GLU LEU ALA ASN SER PHE VAL LYS THR VAL LYS GLU GLU SEQRES 20 A 781 ASP PHE GLU LEU ASP ARG LYS ASP LYS THR ILE ALA LEU SEQRES 21 A 781 THR ALA SER GLY ILE SER LYS ALA GLU SER PHE PHE GLY SEQRES 22 A 781 ILE THR ASN LEU THR ASP ILE LYS ASN ILE GLU LEU TYR SEQRES 23 A 781 HIS HIS ILE ASN GLN ALA LEU ARG GLY HIS LYS LEU MET SEQRES 24 A 781 GLU LYS ASP VAL ASP TYR VAL ILE SER ASN GLY GLU VAL SEQRES 25 A 781 MET ILE VAL ASP GLU PHE THR GLY ARG VAL MET ASP GLY SEQRES 26 A 781 ARG ARG TYR THR ASP GLY LEU HIS GLN ALA ILE GLU ALA SEQRES 27 A 781 LYS GLU GLY VAL GLU ILE LYS ASN GLU SER LYS THR MET SEQRES 28 A 781 ALA THR VAL THR TYR GLN ASN PHE PHE ARG LEU TYR GLU SEQRES 29 A 781 LYS LEU SER GLY MET THR GLY THR ALA LYS THR GLU GLU SEQRES 30 A 781 GLY GLU PHE GLU SER ILE TYR LYS LEU ASN VAL VAL GLN SEQRES 31 A 781 ILE PRO THR ASN ARG PRO VAL ILE ARG ALA ASP LEU HIS SEQRES 32 A 781 ASP LYS VAL PHE LYS THR GLU GLU GLU LYS TYR SER ALA SEQRES 33 A 781 VAL VAL GLU GLU ILE ILE ARG ILE HIS LYS THR ARG GLN SEQRES 34 A 781 PRO ILE LEU VAL GLY THR VAL SER VAL GLU LYS SER GLU SEQRES 35 A 781 LYS LEU SER LYS MET LEU LYS LYS GLN GLY ILE LYS HIS SEQRES 36 A 781 GLN VAL LEU ASN ALA LYS GLN HIS ASP LYS GLU ALA GLU SEQRES 37 A 781 ILE ILE SER LYS ALA GLY LYS LEU ASP ALA ILE THR ILE SEQRES 38 A 781 ALA THR ASN MET ALA GLY ARG GLY THR ASP ILE SER LEU SEQRES 39 A 781 GLY ALA GLY ASP LYS GLU GLU GLU GLN GLU VAL LYS ASP SEQRES 40 A 781 LEU GLY GLY LEU TYR VAL ILE GLY THR GLU ARG HIS GLU SEQRES 41 A 781 SER ARG ARG ILE ASP ASN GLN LEU ARG GLY ARG SER GLY SEQRES 42 A 781 ARG GLN GLY ASP PRO GLY THR SER ARG PHE PHE VAL SER SEQRES 43 A 781 LEU GLU ASP ASP VAL ILE LYS LEU TYR GLY GLY LYS THR SEQRES 44 A 781 ILE GLU LYS LEU MET LYS ARG THR SER SER ASN GLU ASN SEQRES 45 A 781 THR ALA ILE GLU SER LYS ALA LEU THR ARG ALA ILE GLU SEQRES 46 A 781 ARG ALA GLN LYS GLY VAL GLU GLY LYS ASN PHE GLU ILE SEQRES 47 A 781 ARG LYS ASN VAL LEU LYS TYR ASP ASP THR ILE ASN GLU SEQRES 48 A 781 GLN ARG LYS VAL ILE TYR ASN GLU ARG ASN LYS VAL LEU SEQRES 49 A 781 ASN ASP GLU ASP ILE GLN GLU ASP ILE GLN LYS MET VAL SEQRES 50 A 781 LYS ASP ILE ILE GLN GLU ALA GLY GLU THR TYR LEU ILE SEQRES 51 A 781 GLY ARG LYS ARG ASP TYR TYR GLY TYR PHE LYS HIS LEU SEQRES 52 A 781 TYR SER THR PHE MET PRO ALA ASP THR LEU LEU ILE PRO SEQRES 53 A 781 GLY VAL ASP LYS LYS SER VAL GLN GLU ILE ILE ASP SER SEQRES 54 A 781 THR TYR GLU ILE SER LYS ARG VAL TYR ASP LEU LYS LYS SEQRES 55 A 781 MET MET LEU GLY ILE ASP LYS VAL ALA GLU LEU GLU LYS SEQRES 56 A 781 THR VAL LEU LEU LYS VAL VAL ASP GLN TYR TRP ILE ASP SEQRES 57 A 781 HIS ILE ASP ALA MET GLU GLN LEU LYS GLN TYR ILE GLY SEQRES 58 A 781 LEU LYS SER TYR ALA GLN LYS ASP PRO PHE LYS GLU TYR SEQRES 59 A 781 ALA LEU GLU GLY TYR ASP MET PHE GLU ALA LEU ASN LYS SEQRES 60 A 781 ASN ILE ARG GLU ALA THR VAL GLN TYR LEU TYR LYS PHE SEQRES 61 A 781 ASN HET AGS A 801 43 HETNAM AGS PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER HETSYN AGS ATP-GAMMA-S; ADENOSINE 5'-(3-THIOTRIPHOSPHATE); HETSYN 2 AGS ADENOSINE 5'-(GAMMA-THIOTRIPHOSPHATE); ADENOSINE-5'- HETSYN 3 AGS DIPHOSPHATE MONOTHIOPHOSPHATE FORMUL 2 AGS C10 H16 N5 O12 P3 S FORMUL 3 HOH *14(H2 O) HELIX 1 AA1 ASP A 2 ASN A 25 1 24 HELIX 2 AA2 SER A 27 ASP A 33 1 7 HELIX 3 AA3 ASP A 33 GLY A 45 1 13 HELIX 4 AA4 THR A 47 LEU A 67 1 21 HELIX 5 AA5 TYR A 72 GLN A 84 1 13 HELIX 6 AA6 GLY A 95 LEU A 109 1 15 HELIX 7 AA7 ASN A 120 LEU A 138 1 19 HELIX 8 AA8 ASP A 150 CYS A 160 1 11 HELIX 9 AA9 ASN A 167 VAL A 180 1 14 HELIX 10 AB1 GLU A 198 LEU A 203 1 6 HELIX 11 AB2 ASP A 205 THR A 209 5 5 HELIX 12 AB3 GLY A 217 VAL A 234 1 18 HELIX 13 AB4 LYS A 235 GLU A 237 5 3 HELIX 14 AB5 THR A 251 PHE A 262 1 12 HELIX 15 AB6 ASN A 272 LEU A 288 1 17 HELIX 16 AB7 GLY A 321 GLY A 331 1 11 HELIX 17 AB8 THR A 345 PHE A 350 1 6 HELIX 18 AB9 GLU A 366 LYS A 375 1 10 HELIX 19 AC1 THR A 399 ARG A 418 1 20 HELIX 20 AC2 SER A 427 GLY A 442 1 16 HELIX 21 AC3 GLN A 452 GLY A 464 1 13 HELIX 22 AC4 ASP A 488 LEU A 498 1 11 HELIX 23 AC5 SER A 511 ARG A 521 1 11 HELIX 24 AC6 ASP A 539 LEU A 544 1 6 HELIX 25 AC7 GLY A 547 ARG A 556 1 10 HELIX 26 AC8 SER A 567 ASN A 615 1 49 HELIX 27 AC9 ILE A 619 TYR A 638 1 20 HELIX 28 AD1 ASP A 645 PHE A 657 1 13 HELIX 29 AD2 SER A 672 GLY A 696 1 25 HELIX 30 AD3 GLY A 696 GLY A 731 1 36 HELIX 31 AD4 ASP A 739 TYR A 768 1 30 SHEET 1 AA1 7 VAL A 142 ILE A 145 0 SHEET 2 AA1 7 ILE A 162 THR A 166 1 O TYR A 164 N ILE A 145 SHEET 3 AA1 7 VAL A 114 THR A 118 1 N VAL A 116 O THR A 163 SHEET 4 AA1 7 PHE A 193 ASP A 197 1 O ILE A 195 N HIS A 115 SHEET 5 AA1 7 LYS A 355 THR A 360 1 O MET A 359 N VAL A 196 SHEET 6 AA1 7 ILE A 87 GLU A 89 1 N ALA A 88 O GLY A 358 SHEET 7 AA1 7 VAL A 378 GLN A 380 1 O VAL A 379 N ILE A 87 SHEET 1 AA2 2 LEU A 211 GLY A 215 0 SHEET 2 AA2 2 LYS A 339 VAL A 344 -1 O VAL A 344 N LEU A 211 SHEET 1 AA3 2 PHE A 239 ASP A 242 0 SHEET 2 AA3 2 THR A 247 LEU A 250 -1 O ALA A 249 N GLU A 240 SHEET 1 AA4 2 VAL A 296 SER A 298 0 SHEET 2 AA4 2 GLU A 301 MET A 303 -1 O MET A 303 N VAL A 296 SHEET 1 AA5 6 ALA A 390 LYS A 395 0 SHEET 2 AA5 6 GLY A 529 PHE A 534 1 O SER A 531 N ALA A 390 SHEET 3 AA5 6 LEU A 501 GLY A 505 1 N VAL A 503 O ARG A 532 SHEET 4 AA5 6 ILE A 421 GLY A 424 1 N LEU A 422 O TYR A 502 SHEET 5 AA5 6 ILE A 469 ALA A 472 1 O THR A 470 N ILE A 421 SHEET 6 AA5 6 GLN A 446 LEU A 448 1 N LEU A 448 O ILE A 471 SITE 1 AC1 14 MET A 69 ARG A 70 TYR A 72 GLN A 75 SITE 2 AC1 14 THR A 92 GLY A 93 GLU A 94 GLY A 95 SITE 3 AC1 14 LYS A 96 THR A 97 ARG A 126 ASP A 197 SITE 4 AC1 14 GLY A 479 HOH A 902 CRYST1 82.940 96.840 114.680 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012057 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010326 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008720 0.00000