HEADER GENE REGULATION 15-OCT-19 6T4X TITLE ROR(GAMMA)T LIGAND BINDING DOMAIN IN COMPLEX WITH 25- TITLE 2 HYDROXYCHOLESTEROL AND ALLOSTERIC LIGAND FM26 COMPND MOL_ID: 1; COMPND 2 MOLECULE: NUCLEAR RECEPTOR ROR-GAMMA; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: NUCLEAR RECEPTOR RZR-GAMMA,NUCLEAR RECEPTOR SUBFAMILY 1 COMPND 5 GROUP F MEMBER 3,RAR-RELATED ORPHAN RECEPTOR C,RETINOID-RELATED COMPND 6 ORPHAN RECEPTOR-GAMMA; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RORC, NR1F3, RORG, RZRG; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS NUCLEAR RECEPTOR, ALLOSTERIC, INVERSE AGONIST, INHIBITOR, GENE KEYWDS 2 REGULATION EXPDTA X-RAY DIFFRACTION AUTHOR R.M.J.M.DE VRIES,F.A.MEIJER,L.BRUNSVELD REVDAT 3 24-JAN-24 6T4X 1 REMARK REVDAT 2 17-FEB-21 6T4X 1 JRNL REVDAT 1 18-NOV-20 6T4X 0 JRNL AUTH R.M.J.M.DE VRIES,F.A.MEIJER,R.G.DOVESTON, JRNL AUTH 2 I.A.LEIJTEN-VAN DE GEVEL,L.BRUNSVELD JRNL TITL COOPERATIVITY BETWEEN THE ORTHOSTERIC AND ALLOSTERIC LIGAND JRNL TITL 2 BINDING SITES OF ROR GAMMA T. JRNL REF PROC.NATL.ACAD.SCI.USA V. 118 2021 JRNL REFN ESSN 1091-6490 JRNL PMID 33536342 JRNL DOI 10.1073/PNAS.2021287118 REMARK 2 REMARK 2 RESOLUTION. 1.48 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.16_3549 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.48 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 94.29 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 108984 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.175 REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : 0.185 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.940 REMARK 3 FREE R VALUE TEST SET COUNT : 5383 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 94.2930 - 4.5986 1.00 3449 187 0.1676 0.1640 REMARK 3 2 4.5986 - 3.6500 1.00 3471 174 0.1360 0.1501 REMARK 3 3 3.6500 - 3.1886 1.00 3450 176 0.1643 0.1656 REMARK 3 4 3.1886 - 2.8970 1.00 3473 169 0.1722 0.1623 REMARK 3 5 2.8970 - 2.6894 1.00 3461 178 0.1682 0.1901 REMARK 3 6 2.6894 - 2.5308 1.00 3439 162 0.1617 0.1804 REMARK 3 7 2.5308 - 2.4040 1.00 3487 163 0.1697 0.1971 REMARK 3 8 2.4040 - 2.2994 1.00 3457 181 0.1687 0.1888 REMARK 3 9 2.2994 - 2.2108 1.00 3425 221 0.1728 0.1905 REMARK 3 10 2.2108 - 2.1346 1.00 3422 179 0.1733 0.1930 REMARK 3 11 2.1346 - 2.0678 1.00 3487 164 0.1696 0.1682 REMARK 3 12 2.0678 - 2.0087 1.00 3401 206 0.1771 0.1846 REMARK 3 13 2.0087 - 1.9558 1.00 3472 181 0.1784 0.1931 REMARK 3 14 1.9558 - 1.9081 1.00 3432 172 0.1849 0.1800 REMARK 3 15 1.9081 - 1.8647 1.00 3478 189 0.1882 0.2073 REMARK 3 16 1.8647 - 1.8250 1.00 3426 210 0.1889 0.2011 REMARK 3 17 1.8250 - 1.7885 1.00 3404 188 0.2008 0.2006 REMARK 3 18 1.7885 - 1.7548 1.00 3466 190 0.1983 0.2179 REMARK 3 19 1.7548 - 1.7234 1.00 3458 190 0.2179 0.2190 REMARK 3 20 1.7234 - 1.6942 1.00 3440 173 0.2233 0.2712 REMARK 3 21 1.6942 - 1.6669 1.00 3444 205 0.2241 0.2440 REMARK 3 22 1.6669 - 1.6412 1.00 3437 198 0.2203 0.2499 REMARK 3 23 1.6412 - 1.6171 1.00 3437 187 0.2279 0.2304 REMARK 3 24 1.6171 - 1.5943 1.00 3457 138 0.2343 0.2236 REMARK 3 25 1.5943 - 1.5728 1.00 3493 179 0.2472 0.2698 REMARK 3 26 1.5728 - 1.5523 1.00 3471 142 0.2467 0.3081 REMARK 3 27 1.5523 - 1.5329 1.00 3441 189 0.2621 0.2872 REMARK 3 28 1.5329 - 1.5144 1.00 3435 168 0.2858 0.3494 REMARK 3 29 1.5144 - 1.4968 1.00 3521 153 0.2906 0.2593 REMARK 3 30 1.4968 - 1.4800 1.00 3467 171 0.2950 0.3210 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.410 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.24 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 3.0868 -40.3339 -4.9129 REMARK 3 T TENSOR REMARK 3 T11: 0.1657 T22: 0.1577 REMARK 3 T33: 0.2878 T12: -0.0217 REMARK 3 T13: -0.0286 T23: 0.0196 REMARK 3 L TENSOR REMARK 3 L11: 2.0040 L22: 0.6110 REMARK 3 L33: 0.9902 L12: -0.6182 REMARK 3 L13: 0.9621 L23: -0.3997 REMARK 3 S TENSOR REMARK 3 S11: 0.0359 S12: -0.0250 S13: -0.0215 REMARK 3 S21: -0.0004 S22: -0.0117 S23: 0.0091 REMARK 3 S31: 0.0054 S32: -0.0207 S33: -0.0264 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6T4X COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 15-OCT-19. REMARK 100 THE DEPOSITION ID IS D_1292104860. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-SEP-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.976254 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 108984 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.480 REMARK 200 RESOLUTION RANGE LOW (A) : 98.540 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 39.10 REMARK 200 R MERGE (I) : 0.08300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 25.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.48 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.51 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6SAL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.48 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.76 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.6M AMSO4 + 0.1M TRIS, PH 8.5, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 32.84567 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 65.69133 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 49.26850 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 82.11417 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 16.42283 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 32.84567 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 65.69133 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 82.11417 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 49.26850 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 16.42283 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1320 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12130 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 1.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 735 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 245 REMARK 465 SER A 246 REMARK 465 SER A 247 REMARK 465 HIS A 248 REMARK 465 HIS A 249 REMARK 465 HIS A 250 REMARK 465 HIS A 251 REMARK 465 HIS A 252 REMARK 465 HIS A 253 REMARK 465 SER A 254 REMARK 465 SER A 255 REMARK 465 GLY A 256 REMARK 465 LEU A 257 REMARK 465 VAL A 258 REMARK 465 PRO A 259 REMARK 465 ARG A 260 REMARK 465 GLY A 261 REMARK 465 SER A 262 REMARK 465 HIS A 263 REMARK 465 MET A 264 REMARK 465 ALA A 265 REMARK 465 SER A 266 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 395 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG A 437 O HOH A 701 1.32 REMARK 500 O HOH A 945 O HOH A 955 1.80 REMARK 500 O HOH A 925 O HOH A 942 1.81 REMARK 500 O HOH A 722 O HOH A 833 1.86 REMARK 500 OE1 GLU A 290 O HOH A 702 1.89 REMARK 500 O HOH A 826 O HOH A 907 1.92 REMARK 500 O HOH A 895 O HOH A 947 1.97 REMARK 500 OE1 GLU A 435 O HOH A 703 1.97 REMARK 500 O HOH A 900 O HOH A 928 1.98 REMARK 500 ND1 HIS A 322 O HOH A 704 1.99 REMARK 500 OE1 GLU A 326 O HOH A 705 2.02 REMARK 500 NH2 ARG A 288 O HOH A 702 2.02 REMARK 500 NZ LYS A 503 O HOH A 706 2.07 REMARK 500 NH1 ARG A 437 O HOH A 707 2.07 REMARK 500 NH1 ARG A 294 O HOH A 708 2.07 REMARK 500 OG SER A 408 O HOH A 709 2.08 REMARK 500 O HOH A 897 O HOH A 905 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE1 GLN A 495 NE2 GLN A 495 11554 1.90 REMARK 500 O HOH A 875 O HOH A 909 6555 1.99 REMARK 500 O HOH A 721 O HOH A 721 12545 2.10 REMARK 500 NE2 GLN A 495 NE2 GLN A 495 11554 2.12 REMARK 500 CD GLN A 495 NE2 GLN A 495 11554 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 326 N GLU A 326 CA 0.379 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU A 326 CB - CA - C ANGL. DEV. = 15.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 286 -57.67 76.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HC3 A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue L3E A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 603 DBREF 6T4X A 265 507 UNP P51449 RORG_HUMAN 265 507 SEQADV 6T4X GLY A 245 UNP P51449 EXPRESSION TAG SEQADV 6T4X SER A 246 UNP P51449 EXPRESSION TAG SEQADV 6T4X SER A 247 UNP P51449 EXPRESSION TAG SEQADV 6T4X HIS A 248 UNP P51449 EXPRESSION TAG SEQADV 6T4X HIS A 249 UNP P51449 EXPRESSION TAG SEQADV 6T4X HIS A 250 UNP P51449 EXPRESSION TAG SEQADV 6T4X HIS A 251 UNP P51449 EXPRESSION TAG SEQADV 6T4X HIS A 252 UNP P51449 EXPRESSION TAG SEQADV 6T4X HIS A 253 UNP P51449 EXPRESSION TAG SEQADV 6T4X SER A 254 UNP P51449 EXPRESSION TAG SEQADV 6T4X SER A 255 UNP P51449 EXPRESSION TAG SEQADV 6T4X GLY A 256 UNP P51449 EXPRESSION TAG SEQADV 6T4X LEU A 257 UNP P51449 EXPRESSION TAG SEQADV 6T4X VAL A 258 UNP P51449 EXPRESSION TAG SEQADV 6T4X PRO A 259 UNP P51449 EXPRESSION TAG SEQADV 6T4X ARG A 260 UNP P51449 EXPRESSION TAG SEQADV 6T4X GLY A 261 UNP P51449 EXPRESSION TAG SEQADV 6T4X SER A 262 UNP P51449 EXPRESSION TAG SEQADV 6T4X HIS A 263 UNP P51449 EXPRESSION TAG SEQADV 6T4X MET A 264 UNP P51449 EXPRESSION TAG SEQADV 6T4X HIS A 455 UNP P51449 CYS 455 CONFLICT SEQRES 1 A 263 GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY LEU SEQRES 2 A 263 VAL PRO ARG GLY SER HIS MET ALA SER LEU THR GLU ILE SEQRES 3 A 263 GLU HIS LEU VAL GLN SER VAL CYS LYS SER TYR ARG GLU SEQRES 4 A 263 THR CYS GLN LEU ARG LEU GLU ASP LEU LEU ARG GLN ARG SEQRES 5 A 263 SER ASN ILE PHE SER ARG GLU GLU VAL THR GLY TYR GLN SEQRES 6 A 263 ARG LYS SER MET TRP GLU MET TRP GLU ARG CYS ALA HIS SEQRES 7 A 263 HIS LEU THR GLU ALA ILE GLN TYR VAL VAL GLU PHE ALA SEQRES 8 A 263 LYS ARG LEU SER GLY PHE MET GLU LEU CYS GLN ASN ASP SEQRES 9 A 263 GLN ILE VAL LEU LEU LYS ALA GLY ALA MET GLU VAL VAL SEQRES 10 A 263 LEU VAL ARG MET CYS ARG ALA TYR ASN ALA ASP ASN ARG SEQRES 11 A 263 THR VAL PHE PHE GLU GLY LYS TYR GLY GLY MET GLU LEU SEQRES 12 A 263 PHE ARG ALA LEU GLY CYS SER GLU LEU ILE SER SER ILE SEQRES 13 A 263 PHE ASP PHE SER HIS SER LEU SER ALA LEU HIS PHE SER SEQRES 14 A 263 GLU ASP GLU ILE ALA LEU TYR THR ALA LEU VAL LEU ILE SEQRES 15 A 263 ASN ALA HIS ARG PRO GLY LEU GLN GLU LYS ARG LYS VAL SEQRES 16 A 263 GLU GLN LEU GLN TYR ASN LEU GLU LEU ALA PHE HIS HIS SEQRES 17 A 263 HIS LEU HIS LYS THR HIS ARG GLN SER ILE LEU ALA LYS SEQRES 18 A 263 LEU PRO PRO LYS GLY LYS LEU ARG SER LEU CYS SER GLN SEQRES 19 A 263 HIS VAL GLU ARG LEU GLN ILE PHE GLN HIS LEU HIS PRO SEQRES 20 A 263 ILE VAL VAL GLN ALA ALA PHE PRO PRO LEU TYR LYS GLU SEQRES 21 A 263 LEU PHE SER HET HC3 A 601 29 HET L3E A 602 32 HET GOL A 603 12 HETNAM HC3 25-HYDROXYCHOLESTEROL HETNAM L3E 4-[(~{E})-[3-[2-CHLORANYL-6-(TRIFLUOROMETHYL)PHENYL]-5- HETNAM 2 L3E (1~{H}-PYRROL-3-YL)-1,2-OXAZOL-4- HETNAM 3 L3E YL]METHYLIDENEAMINO]BENZOIC ACID HETNAM GOL GLYCEROL HETSYN HC3 (3BETA)-CHOLEST-5-ENE-3,25-DIOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 HC3 C27 H46 O2 FORMUL 3 L3E C22 H13 CL F3 N3 O3 FORMUL 4 GOL C3 H8 O3 FORMUL 5 HOH *255(H2 O) HELIX 1 AA1 THR A 268 CYS A 285 1 18 HELIX 2 AA2 ARG A 288 GLN A 295 1 8 HELIX 3 AA3 ARG A 296 ASN A 298 5 3 HELIX 4 AA4 SER A 301 LYS A 311 1 11 HELIX 5 AA5 SER A 312 LEU A 338 1 27 HELIX 6 AA6 CYS A 345 MET A 365 1 21 HELIX 7 AA7 GLY A 384 GLY A 392 5 9 HELIX 8 AA8 CYS A 393 ALA A 409 1 17 HELIX 9 AA9 SER A 413 ILE A 426 1 14 HELIX 10 AB1 GLU A 435 THR A 457 1 23 HELIX 11 AB2 ARG A 459 LEU A 466 5 8 HELIX 12 AB3 PRO A 468 HIS A 490 1 23 HELIX 13 AB4 PHE A 498 PHE A 506 1 9 SHEET 1 AA1 3 TYR A 369 ASN A 370 0 SHEET 2 AA1 3 THR A 375 PHE A 378 -1 O THR A 375 N ASN A 370 SHEET 3 AA1 3 LYS A 381 GLY A 383 -1 O LYS A 381 N PHE A 378 SITE 1 AC1 9 GLN A 286 CYS A 320 LEU A 324 MET A 365 SITE 2 AC1 9 HIS A 479 LEU A 483 PHE A 486 GOL A 603 SITE 3 AC1 9 HOH A 810 SITE 1 AC2 16 TRP A 317 LEU A 324 THR A 325 GLN A 329 SITE 2 AC2 16 LEU A 353 LYS A 354 MET A 358 VAL A 480 SITE 3 AC2 16 LEU A 483 GLN A 484 ALA A 496 ALA A 497 SITE 4 AC2 16 PHE A 498 TYR A 502 LEU A 505 PHE A 506 SITE 1 AC3 7 GLN A 286 PHE A 377 PHE A 378 GLU A 379 SITE 2 AC3 7 HC3 A 601 HOH A 736 HOH A 882 CRYST1 108.880 108.880 98.537 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009184 0.005303 0.000000 0.00000 SCALE2 0.000000 0.010605 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010148 0.00000