HEADER TRANSCRIPTION 16-OCT-19 6T5I TITLE THE TRANSCRIPTIONAL REGULATOR PRFA FROM LISTERIA MONOCYTOGENES IN TITLE 2 COMPLEX WITH INHIBITOR OF WNT PRODUCTION (IWP)-2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: LISTERIOLYSIN POSITIVE REGULATORY FACTOR A; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: LISTERIOLYSIN POSITIVE REGULATORY PROTEIN,LISTERIOLYSIN COMPND 5 REGULATORY PROTEIN,PLEITROPHIC REGULATORY FACTOR A,POSITIVE COMPND 6 REGULATORY FACTOR A,PRFA,TRANSCRIPTIONAL REGULATOR; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LISTERIA MONOCYTOGENES; SOURCE 3 ORGANISM_TAXID: 1639; SOURCE 4 GENE: PRFA, AJN46_04535, BWI22_01025; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS LISTERIA MONOCYTOGENES, TRANSCRIPTION, DNA BINDING PROTEIN, INHIBITOR KEYWDS 2 OF WNT (IWP) EXPDTA X-RAY DIFFRACTION AUTHOR M.OELKER,C.GRUNDSTROM,A.BLUMENTHAL,A.E.SAUER-ERIKSSON REVDAT 3 24-JAN-24 6T5I 1 REMARK REVDAT 2 19-JAN-22 6T5I 1 JRNL REVDAT 1 27-OCT-21 6T5I 0 JRNL AUTH T.T.TRAN,C.D.MATHMANN,M.GATICA-ANDRADES,R.F.ROLLO,M.OELKER, JRNL AUTH 2 J.K.LJUNGBERG,T.T.K.NGUYEN,A.ZAMOSHNIKOVA,L.K.KUMMARI, JRNL AUTH 3 O.J.K.WYER,K.M.IRVINE,J.MELO-BOLIVAR,A.GROSS,D.BROWN, JRNL AUTH 4 J.Y.W.MAK,D.P.FAIRLIE,K.A.HANSFORD,M.A.COOPER,R.GIRI, JRNL AUTH 5 V.SCHREIBER,S.R.JOSEPH,F.SIMPSON,T.C.BARNETT,J.JOHANSSON, JRNL AUTH 6 W.DANKERS,J.HARRIS,T.J.WELLS,R.KAPETANOVIC,M.J.SWEET, JRNL AUTH 7 E.A.LATOMANSKI,H.J.NEWTON,R.J.R.GUERILLOT,A.HACHANI, JRNL AUTH 8 T.P.STINEAR,S.Y.ONG,Y.CHANDRAN,E.L.HARTLAND,B.KOBE,J.L.STOW, JRNL AUTH 9 A.E.SAUER-ERIKSSON,J.BEGUN,J.C.KLING,A.BLUMENTHAL JRNL TITL INHIBITION OF THE MASTER REGULATOR OF LISTERIA MONOCYTOGENES JRNL TITL 2 VIRULENCE ENABLES BACTERIAL CLEARANCE FROM SPACIOUS JRNL TITL 3 REPLICATION VACUOLES IN INFECTED MACROPHAGES. JRNL REF PLOS PATHOG. V. 18 10166 2022 JRNL REFN ESSN 1553-7374 JRNL PMID 35007292 JRNL DOI 10.1371/JOURNAL.PPAT.1010166 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.14_3260 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.33 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 30998 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.201 REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.252 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1550 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.3340 - 4.4468 1.00 2881 151 0.1855 0.2192 REMARK 3 2 4.4468 - 3.5300 1.00 2751 146 0.1648 0.2169 REMARK 3 3 3.5300 - 3.0839 0.99 2702 142 0.1953 0.2731 REMARK 3 4 3.0839 - 2.8019 0.99 2663 140 0.2046 0.2649 REMARK 3 5 2.8019 - 2.6011 0.99 2688 142 0.2271 0.3039 REMARK 3 6 2.6011 - 2.4478 0.99 2651 139 0.2407 0.2963 REMARK 3 7 2.4478 - 2.3252 0.99 2637 139 0.2387 0.3029 REMARK 3 8 2.3252 - 2.2240 0.99 2627 138 0.2293 0.2655 REMARK 3 9 2.2240 - 2.1384 0.98 2623 138 0.2348 0.2852 REMARK 3 10 2.1384 - 2.0646 0.99 2612 137 0.2401 0.2738 REMARK 3 11 2.0646 - 2.0000 0.99 2613 138 0.2520 0.2970 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.230 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.970 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 52.32 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6T5I COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 16-OCT-19. REMARK 100 THE DEPOSITION ID IS D_1292104804. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-SEP-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, EMBL C/O DESY REMARK 200 BEAMLINE : P13 (MX1) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9720 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30998 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 46.400 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 12.90 REMARK 200 R MERGE (I) : 0.13500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.8 REMARK 200 DATA REDUNDANCY IN SHELL : 13.10 REMARK 200 R MERGE FOR SHELL (I) : 2.07800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6EUT REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.06 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.05 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PURIFIED PRFA, IN 200 MM NACL AND 20 REMARK 280 MM NAP BUFFER AT PH 6.5 WAS MIXED WITH 1 MM IWP2 AND 3.7 MM DTT REMARK 280 PRIOR TO CRYSTALLIZATION. DROPLETS OF 1 MICROL PROTEIN SOLUTION REMARK 280 AT 3.1 MG ML-1 WERE MIXED WITH 1 MICROL RESERVOIR SOLUTION REMARK 280 CONSISTING OF 29 % (W/V) PEG 4000, 100 MM SODIUM CITRATE PH 5.5, REMARK 280 AND 18 % (V/V) ISOPROPANOL. THE DIMETHYL SULFOXIDE (DMSO) REMARK 280 CONCENTRATION WAS KEPT AT 10% (V/V). PRIOR TO VITRIFICATION, REMARK 280 CRYSTALS WERE EQUILIBRATED FOR 2 DAYS IN A SOLUTION CONTAINING REMARK 280 35 % (W/V) PEG 4000, 100 MM SODIUM CITRATE PH 5.5 AND 1 MM IWP- REMARK 280 2., VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 23.97550 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 50.72350 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 46.33350 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 50.72350 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 23.97550 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 46.33350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7310 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20110 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -31.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 ALA A 0 REMARK 465 MET A 1 REMARK 465 GLY B -1 REMARK 465 ALA B 0 REMARK 465 MET B 1 REMARK 465 TYR B 176 REMARK 465 SER B 177 REMARK 465 SER B 178 REMARK 465 GLY B 179 REMARK 465 ILE B 180 REMARK 465 ALA B 181 REMARK 465 HIS B 182 REMARK 465 SER B 183 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 14 -7.31 -59.66 REMARK 500 LYS A 25 -4.68 84.03 REMARK 500 ASN A 203 -127.32 58.00 REMARK 500 LYS B 25 -5.40 80.77 REMARK 500 LYS B 197 -1.55 78.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 308 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 30 O REMARK 620 2 HOH A 414 O 93.4 REMARK 620 3 HOH A 440 O 106.6 135.1 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 406 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN B 30 O REMARK 620 2 GLU B 36 OE1 171.3 REMARK 620 3 HOH B 505 O 106.1 77.9 REMARK 620 4 HOH B 522 O 93.0 87.5 144.9 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 9XK A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS A 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 308 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS B 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS B 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA B 406 DBREF 6T5I A 1 237 UNP Q4TVQ0 Q4TVQ0_LISMN 1 237 DBREF 6T5I B 1 237 UNP Q4TVQ0 Q4TVQ0_LISMN 1 237 SEQADV 6T5I GLY A -1 UNP Q4TVQ0 EXPRESSION TAG SEQADV 6T5I ALA A 0 UNP Q4TVQ0 EXPRESSION TAG SEQADV 6T5I GLY B -1 UNP Q4TVQ0 EXPRESSION TAG SEQADV 6T5I ALA B 0 UNP Q4TVQ0 EXPRESSION TAG SEQRES 1 A 239 GLY ALA MET ASN ALA GLN ALA GLU GLU PHE LYS LYS TYR SEQRES 2 A 239 LEU GLU THR ASN GLY ILE LYS PRO LYS GLN PHE HIS LYS SEQRES 3 A 239 LYS GLU LEU ILE PHE ASN GLN TRP ASP PRO GLN GLU TYR SEQRES 4 A 239 CYS ILE PHE LEU TYR ASP GLY ILE THR LYS LEU THR SER SEQRES 5 A 239 ILE SER GLU ASN GLY THR ILE MET ASN LEU GLN TYR TYR SEQRES 6 A 239 LYS GLY ALA PHE VAL ILE MET SER GLY PHE ILE ASP THR SEQRES 7 A 239 GLU THR SER VAL GLY TYR TYR ASN LEU GLU VAL ILE SER SEQRES 8 A 239 GLU GLN ALA THR ALA TYR VAL ILE LYS ILE ASN GLU LEU SEQRES 9 A 239 LYS GLU LEU LEU SER LYS ASN LEU THR HIS PHE PHE TYR SEQRES 10 A 239 VAL PHE GLN THR LEU GLN LYS GLN VAL SER TYR SER LEU SEQRES 11 A 239 ALA LYS PHE ASN ASP PHE SER ILE ASN GLY LYS LEU GLY SEQRES 12 A 239 SER ILE CYS GLY GLN LEU LEU ILE LEU THR TYR VAL TYR SEQRES 13 A 239 GLY LYS GLU THR PRO ASP GLY ILE LYS ILE THR LEU ASP SEQRES 14 A 239 ASN LEU THR MET GLN GLU LEU GLY TYR SER SER GLY ILE SEQRES 15 A 239 ALA HIS SER SER ALA VAL SER ARG ILE ILE SER LYS LEU SEQRES 16 A 239 LYS GLN GLU LYS VAL ILE VAL TYR LYS ASN SER CYS PHE SEQRES 17 A 239 TYR VAL GLN ASN LEU ASP TYR LEU LYS ARG TYR ALA PRO SEQRES 18 A 239 LYS LEU ASP GLU TRP PHE TYR LEU ALA CYS PRO ALA THR SEQRES 19 A 239 TRP GLY LYS LEU ASN SEQRES 1 B 239 GLY ALA MET ASN ALA GLN ALA GLU GLU PHE LYS LYS TYR SEQRES 2 B 239 LEU GLU THR ASN GLY ILE LYS PRO LYS GLN PHE HIS LYS SEQRES 3 B 239 LYS GLU LEU ILE PHE ASN GLN TRP ASP PRO GLN GLU TYR SEQRES 4 B 239 CYS ILE PHE LEU TYR ASP GLY ILE THR LYS LEU THR SER SEQRES 5 B 239 ILE SER GLU ASN GLY THR ILE MET ASN LEU GLN TYR TYR SEQRES 6 B 239 LYS GLY ALA PHE VAL ILE MET SER GLY PHE ILE ASP THR SEQRES 7 B 239 GLU THR SER VAL GLY TYR TYR ASN LEU GLU VAL ILE SER SEQRES 8 B 239 GLU GLN ALA THR ALA TYR VAL ILE LYS ILE ASN GLU LEU SEQRES 9 B 239 LYS GLU LEU LEU SER LYS ASN LEU THR HIS PHE PHE TYR SEQRES 10 B 239 VAL PHE GLN THR LEU GLN LYS GLN VAL SER TYR SER LEU SEQRES 11 B 239 ALA LYS PHE ASN ASP PHE SER ILE ASN GLY LYS LEU GLY SEQRES 12 B 239 SER ILE CYS GLY GLN LEU LEU ILE LEU THR TYR VAL TYR SEQRES 13 B 239 GLY LYS GLU THR PRO ASP GLY ILE LYS ILE THR LEU ASP SEQRES 14 B 239 ASN LEU THR MET GLN GLU LEU GLY TYR SER SER GLY ILE SEQRES 15 B 239 ALA HIS SER SER ALA VAL SER ARG ILE ILE SER LYS LEU SEQRES 16 B 239 LYS GLN GLU LYS VAL ILE VAL TYR LYS ASN SER CYS PHE SEQRES 17 B 239 TYR VAL GLN ASN LEU ASP TYR LEU LYS ARG TYR ALA PRO SEQRES 18 B 239 LYS LEU ASP GLU TRP PHE TYR LEU ALA CYS PRO ALA THR SEQRES 19 B 239 TRP GLY LYS LEU ASN HET 9XK A 301 31 HET DMS A 302 4 HET DMS A 303 4 HET DMS A 304 4 HET DMS A 305 4 HET DMS A 306 4 HET DMS A 307 8 HET NA A 308 1 HET DMS B 401 4 HET DMS B 402 4 HET DMS B 403 4 HET DMS B 404 4 HET DMS B 405 4 HET NA B 406 1 HETNAM 9XK ~{N}-(6-METHYL-1,3-BENZOTHIAZOL-2-YL)-2-[(4- HETNAM 2 9XK OXIDANYLIDENE-3-PHENYL-6,7-DIHYDROTHIENO[3,2- HETNAM 3 9XK D]PYRIMIDIN-2-YL)SULFANYL]ETHANAMIDE HETNAM DMS DIMETHYL SULFOXIDE HETNAM NA SODIUM ION FORMUL 3 9XK C22 H18 N4 O2 S3 FORMUL 4 DMS 11(C2 H6 O S) FORMUL 10 NA 2(NA 1+) FORMUL 17 HOH *101(H2 O) HELIX 1 AA1 ASN A 2 THR A 14 1 13 HELIX 2 AA2 ILE A 99 ASN A 109 1 11 HELIX 3 AA3 ASN A 109 TYR A 154 1 46 HELIX 4 AA4 THR A 170 GLY A 179 1 10 HELIX 5 AA5 HIS A 182 GLU A 196 1 15 HELIX 6 AA6 ASN A 210 ALA A 218 1 9 HELIX 7 AA7 ALA A 218 CYS A 229 1 12 HELIX 8 AA8 CYS A 229 LEU A 236 1 8 HELIX 9 AA9 ALA B 3 ASN B 15 1 13 HELIX 10 AB1 ILE B 99 ASN B 109 1 11 HELIX 11 AB2 ASN B 109 TYR B 154 1 46 HELIX 12 AB3 ASP B 167 GLY B 175 1 9 HELIX 13 AB4 ALA B 185 GLU B 196 1 12 HELIX 14 AB5 ASN B 210 ALA B 218 1 9 HELIX 15 AB6 ALA B 218 CYS B 229 1 12 HELIX 16 AB7 CYS B 229 LEU B 236 1 8 SHEET 1 AA1 4 LYS A 20 HIS A 23 0 SHEET 2 AA1 4 GLN A 91 LYS A 98 -1 O ALA A 92 N PHE A 22 SHEET 3 AA1 4 TYR A 37 ASP A 43 -1 N CYS A 38 O ILE A 97 SHEET 4 AA1 4 PHE A 67 MET A 70 -1 O ILE A 69 N ILE A 39 SHEET 1 AA2 4 LEU A 27 PHE A 29 0 SHEET 2 AA2 4 ASN A 84 VAL A 87 -1 O LEU A 85 N PHE A 29 SHEET 3 AA2 4 ILE A 45 ILE A 51 -1 N LYS A 47 O GLU A 86 SHEET 4 AA2 4 ILE A 57 LYS A 64 -1 O GLN A 61 N LEU A 48 SHEET 1 AA3 4 GLY A 155 THR A 158 0 SHEET 2 AA3 4 GLY A 161 ILE A 164 -1 O LYS A 163 N LYS A 156 SHEET 3 AA3 4 CYS A 205 VAL A 208 -1 O VAL A 208 N ILE A 162 SHEET 4 AA3 4 ILE A 199 LYS A 202 -1 N VAL A 200 O TYR A 207 SHEET 1 AA4 4 LYS B 20 HIS B 23 0 SHEET 2 AA4 4 GLN B 91 LYS B 98 -1 O ALA B 92 N PHE B 22 SHEET 3 AA4 4 TYR B 37 ASP B 43 -1 N CYS B 38 O ILE B 97 SHEET 4 AA4 4 PHE B 67 MET B 70 -1 O ILE B 69 N ILE B 39 SHEET 1 AA5 4 LEU B 27 PHE B 29 0 SHEET 2 AA5 4 ASN B 84 VAL B 87 -1 O LEU B 85 N ILE B 28 SHEET 3 AA5 4 ILE B 45 ILE B 51 -1 N LYS B 47 O GLU B 86 SHEET 4 AA5 4 ILE B 57 LYS B 64 -1 O GLN B 61 N LEU B 48 SHEET 1 AA6 4 GLY B 155 THR B 158 0 SHEET 2 AA6 4 GLY B 161 ILE B 164 -1 O GLY B 161 N THR B 158 SHEET 3 AA6 4 TYR B 207 VAL B 208 -1 O VAL B 208 N ILE B 162 SHEET 4 AA6 4 ILE B 199 VAL B 200 -1 N VAL B 200 O TYR B 207 LINK O ASN A 30 NA NA A 308 1555 1555 2.38 LINK NA NA A 308 O HOH A 414 1555 1555 2.58 LINK NA NA A 308 O HOH A 440 1555 1555 2.32 LINK O ASN B 30 NA NA B 406 1555 1555 2.51 LINK OE1 GLU B 36 NA NA B 406 1555 1555 3.00 LINK NA NA B 406 O HOH B 505 1555 1555 2.27 LINK NA NA B 406 O HOH B 522 1555 1555 2.62 CISPEP 1 GLY A 65 ALA A 66 0 5.26 CISPEP 2 GLY B 65 ALA B 66 0 -0.10 SITE 1 AC1 12 ILE A 45 TYR A 62 PHE A 67 GLN A 123 SITE 2 AC1 12 TYR A 126 GLN A 146 ILE A 149 LEU A 150 SITE 3 AC1 12 LEU A 166 GLU A 173 SER A 177 HOH A 403 SITE 1 AC2 6 GLN A 31 TRP A 32 ASP A 33 PRO A 34 SITE 2 AC2 6 TYR A 82 HOH B 501 SITE 1 AC3 6 TYR A 63 MET A 70 VAL A 80 GLN A 123 SITE 2 AC3 6 HOH A 425 LEU B 128 SITE 1 AC4 8 ASN A 30 TRP A 32 ASP A 33 HOH A 413 SITE 2 AC4 8 HOH A 418 ILE B 28 ASP B 33 TYR B 37 SITE 1 AC5 4 ASP A 222 TYR A 226 TRP A 233 HOH A 409 SITE 1 AC6 4 ILE A 28 TYR A 37 GLN B 35 HOH B 518 SITE 1 AC7 10 GLU A 13 GLN A 118 LEU A 227 ALA A 228 SITE 2 AC7 10 CYS A 229 PRO A 230 ALA A 231 HOH A 401 SITE 3 AC7 10 PHE B 73 THR B 76 SITE 1 AC8 5 ASN A 30 ASP A 33 GLU A 36 HOH A 414 SITE 2 AC8 5 HOH A 440 SITE 1 AC9 3 GLN B 61 PHE B 67 HOH B 517 SITE 1 AD1 4 PHE A 131 LEU B 60 GLN B 61 SER B 127 SITE 1 AD2 7 VAL A 124 LEU A 128 HOH A 437 TYR B 63 SITE 2 AD2 7 MET B 70 VAL B 80 GLN B 123 SITE 1 AD3 5 ASN B 203 ASP B 222 GLU B 223 TYR B 226 SITE 2 AD3 5 TRP B 233 SITE 1 AD4 2 LYS B 25 GLU B 86 SITE 1 AD5 4 ASN B 30 GLU B 36 HOH B 505 HOH B 522 CRYST1 47.951 92.667 101.447 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020855 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010791 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009857 0.00000