HEADER BIOSYNTHETIC PROTEIN 17-OCT-19 6T65 TITLE CRSYTAL STRUCTURE OF ACINETOBACTER BAUMANNII FABG INHIBITOR COMPLEX AT TITLE 2 2.35 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: 3-OXOACYL-ACP REDUCTASE,3-OXOACYL-ACP REDUCTASE FABG,3- COMPND 5 OXOACYL-[ACYL-CARRIER-PROTEIN] REDUCTASE,3-OXOACYL-[ACYL-CARRIER- COMPND 6 PROTEIN] REDUCTASE FABG,BETA-KETOACYL-ACP REDUCTASE; COMPND 7 EC: 1.1.1.100; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES; COMPND 10 OTHER_DETAILS: THE MUTATION T2A (POSITION 2 IN SEQUENCE, THR MUTATED COMPND 11 TO ALA) WAS INTRODUCED FOR GENE CLONING REASONS. SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ACINETOBACTER BAUMANNII; SOURCE 3 ORGANISM_TAXID: 470; SOURCE 4 GENE: FABG; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS FATTY ACID BIOSYNTHESIS, FABG, (3-OXOACYL-(ACYL-CARRIER-PROTEIN) KEYWDS 2 REDUCTASE), LIGAND COMPLEX, FAS-II, BIOSYNTHETIC PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR R.RUDRARAJU,R.SCHNELL,G.SCHNEIDER REVDAT 3 24-JAN-24 6T65 1 REMARK REVDAT 2 20-JAN-21 6T65 1 TITLE JRNL REVDAT 1 18-NOV-20 6T65 0 JRNL AUTH P.VELLA,R.S.RUDRARAJU,T.LUNDBACK,H.AXELSSON,H.ALMQVIST, JRNL AUTH 2 M.VALLIN,G.SCHNEIDER,R.SCHNELL JRNL TITL A FABG INHIBITOR TARGETING AN ALLOSTERIC BINDING SITE JRNL TITL 2 INHIBITS SEVERAL ORTHOLOGS FROM GRAM-NEGATIVE ESKAPE JRNL TITL 3 PATHOGENS. JRNL REF BIOORG.MED.CHEM. V. 30 15898 2020 JRNL REFN ESSN 1464-3391 JRNL PMID 33388594 JRNL DOI 10.1016/J.BMC.2020.115898 REMARK 2 REMARK 2 RESOLUTION. 2.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 36372 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.213 REMARK 3 R VALUE (WORKING SET) : 0.212 REMARK 3 FREE R VALUE : 0.240 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1873 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.35 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.41 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2689 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.93 REMARK 3 BIN R VALUE (WORKING SET) : 0.3510 REMARK 3 BIN FREE R VALUE SET COUNT : 132 REMARK 3 BIN FREE R VALUE : 0.4290 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6787 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 26 REMARK 3 SOLVENT ATOMS : 162 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 45.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 48.35 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 4.35000 REMARK 3 B22 (A**2) : 1.91000 REMARK 3 B33 (A**2) : -3.60000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -3.20000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.460 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.251 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.196 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.631 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.946 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6893 ; 0.011 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 6799 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9301 ; 1.387 ; 1.961 REMARK 3 BOND ANGLES OTHERS (DEGREES): 15532 ; 0.730 ; 3.001 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 892 ; 4.434 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 293 ;38.983 ;24.471 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1194 ;18.684 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 46 ;15.834 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1088 ; 0.086 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7913 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1557 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 6T65 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 17-OCT-19. REMARK 100 THE DEPOSITION ID IS D_1292104510. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-APR-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.07227 REMARK 200 MONOCHROMATOR : SI 111 REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38286 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.350 REMARK 200 RESOLUTION RANGE LOW (A) : 44.080 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.900 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.05300 REMARK 200 R SYM (I) : 0.05300 REMARK 200 FOR THE DATA SET : 11.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.43 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : 0.51400 REMARK 200 R SYM FOR SHELL (I) : 0.59800 REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 4AFN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M NACL 0.1 M HEPES PH 7.5 27% PEG REMARK 280 3350, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 64.36900 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 12210 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 33870 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -73.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 244 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 GLN B 3 REMARK 465 GLU B 4 REMARK 465 GLU B 51 REMARK 465 GLN B 52 REMARK 465 GLY B 53 REMARK 465 GLU B 187 REMARK 465 MET B 188 REMARK 465 THR B 189 REMARK 465 ASP B 190 REMARK 465 ALA B 191 REMARK 465 LEU B 192 REMARK 465 MET C 1 REMARK 465 ALA C 2 REMARK 465 GLY C 88 REMARK 465 ILE C 89 REMARK 465 THR C 90 REMARK 465 LYS C 91 REMARK 465 ASP C 92 REMARK 465 ASN C 93 REMARK 465 LEU C 94 REMARK 465 PHE C 143 REMARK 465 ALA C 144 REMARK 465 ASN C 145 REMARK 465 PRO C 146 REMARK 465 GLY C 147 REMARK 465 GLN C 148 REMARK 465 ALA C 149 REMARK 465 THR C 189 REMARK 465 ASP C 190 REMARK 465 ALA C 191 REMARK 465 LEU C 192 REMARK 465 SER C 193 REMARK 465 GLU C 194 REMARK 465 ASP C 195 REMARK 465 ILE C 196 REMARK 465 ARG C 197 REMARK 465 ALA C 244 REMARK 465 MET D 1 REMARK 465 ALA D 2 REMARK 465 GLN D 3 REMARK 465 GLU D 4 REMARK 465 GLY D 88 REMARK 465 ILE D 89 REMARK 465 THR D 90 REMARK 465 LYS D 91 REMARK 465 ASP D 92 REMARK 465 ASN D 93 REMARK 465 LEU D 94 REMARK 465 PHE D 143 REMARK 465 ALA D 144 REMARK 465 ASN D 145 REMARK 465 PRO D 146 REMARK 465 GLY D 147 REMARK 465 GLN D 148 REMARK 465 ALA D 149 REMARK 465 THR D 186 REMARK 465 GLU D 187 REMARK 465 MET D 188 REMARK 465 THR D 189 REMARK 465 ASP D 190 REMARK 465 ALA D 191 REMARK 465 LEU D 192 REMARK 465 SER D 193 REMARK 465 GLU D 194 REMARK 465 ASP D 195 REMARK 465 ILE D 196 REMARK 465 ARG D 197 REMARK 465 LYS D 198 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LYS B 6 O HOH B 301 1.59 REMARK 500 N PHE B 31 O HOH B 301 1.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE1 GLU A 194 NH2 ARG B 197 1655 2.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG D 5 NE - CZ - NH2 ANGL. DEV. = 3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 77 -33.89 -135.97 REMARK 500 HIS A 110 -64.01 -93.56 REMARK 500 ARG A 129 5.29 56.91 REMARK 500 SER A 137 -150.31 -102.94 REMARK 500 SER A 193 -178.51 -52.05 REMARK 500 SER B 137 -139.79 -105.47 REMARK 500 THR C 186 -68.55 -105.62 REMARK 500 GLU C 187 -67.39 -136.71 REMARK 500 LEU D 96 -153.87 161.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MLH C 301 DBREF 6T65 A 1 244 UNP V5VHN7 V5VHN7_ACIBA 1 244 DBREF 6T65 B 1 244 UNP V5VHN7 V5VHN7_ACIBA 1 244 DBREF 6T65 C 1 244 UNP V5VHN7 V5VHN7_ACIBA 1 244 DBREF 6T65 D 1 244 UNP V5VHN7 V5VHN7_ACIBA 1 244 SEQADV 6T65 ALA A 2 UNP V5VHN7 THR 2 ENGINEERED MUTATION SEQADV 6T65 ALA B 2 UNP V5VHN7 THR 2 ENGINEERED MUTATION SEQADV 6T65 ALA C 2 UNP V5VHN7 THR 2 ENGINEERED MUTATION SEQADV 6T65 ALA D 2 UNP V5VHN7 THR 2 ENGINEERED MUTATION SEQRES 1 A 244 MET ALA GLN GLU ARG LYS VAL ALA LEU VAL THR GLY ALA SEQRES 2 A 244 SER ARG GLY ILE GLY ALA ALA ILE ALA GLN GLN LEU ILE SEQRES 3 A 244 GLN ASP GLY TYR PHE VAL VAL GLY THR ALA THR SER GLU SEQRES 4 A 244 SER GLY ALA GLN LYS LEU THR ASP SER PHE GLY GLU GLN SEQRES 5 A 244 GLY ALA GLY LEU ALA LEU ASP VAL ARG ASN LEU ASP GLU SEQRES 6 A 244 ILE GLU ALA VAL VAL SER HIS ILE GLU GLN ASN TYR GLY SEQRES 7 A 244 PRO VAL LEU VAL LEU VAL ASN ASN ALA GLY ILE THR LYS SEQRES 8 A 244 ASP ASN LEU LEU LEU ARG MET SER GLU ASP ASP TRP ASP SEQRES 9 A 244 ASP ILE LEU ASN ILE HIS LEU LYS ALA VAL TYR ARG LEU SEQRES 10 A 244 SER LYS ARG VAL LEU LYS GLY MET THR LYS ALA ARG PHE SEQRES 11 A 244 GLY ARG ILE ILE ASN ILE SER SER VAL VAL ALA HIS PHE SEQRES 12 A 244 ALA ASN PRO GLY GLN ALA ASN TYR SER ALA ALA LYS ALA SEQRES 13 A 244 GLY ILE GLU ALA PHE SER ARG SER LEU ALA LYS GLU MET SEQRES 14 A 244 GLY SER ARG GLN ILE THR VAL ASN SER VAL ALA PRO GLY SEQRES 15 A 244 PHE ILE ALA THR GLU MET THR ASP ALA LEU SER GLU ASP SEQRES 16 A 244 ILE ARG LYS LYS MET SER ASP GLN VAL ALA LEU ASN ARG SEQRES 17 A 244 LEU GLY GLU PRO GLN ASP ILE ALA ASN ALA VAL SER PHE SEQRES 18 A 244 LEU ALA SER ASP LYS ALA GLY TYR ILE THR GLY THR VAL SEQRES 19 A 244 LEU HIS VAL ASN GLY GLY LEU TYR MET ALA SEQRES 1 B 244 MET ALA GLN GLU ARG LYS VAL ALA LEU VAL THR GLY ALA SEQRES 2 B 244 SER ARG GLY ILE GLY ALA ALA ILE ALA GLN GLN LEU ILE SEQRES 3 B 244 GLN ASP GLY TYR PHE VAL VAL GLY THR ALA THR SER GLU SEQRES 4 B 244 SER GLY ALA GLN LYS LEU THR ASP SER PHE GLY GLU GLN SEQRES 5 B 244 GLY ALA GLY LEU ALA LEU ASP VAL ARG ASN LEU ASP GLU SEQRES 6 B 244 ILE GLU ALA VAL VAL SER HIS ILE GLU GLN ASN TYR GLY SEQRES 7 B 244 PRO VAL LEU VAL LEU VAL ASN ASN ALA GLY ILE THR LYS SEQRES 8 B 244 ASP ASN LEU LEU LEU ARG MET SER GLU ASP ASP TRP ASP SEQRES 9 B 244 ASP ILE LEU ASN ILE HIS LEU LYS ALA VAL TYR ARG LEU SEQRES 10 B 244 SER LYS ARG VAL LEU LYS GLY MET THR LYS ALA ARG PHE SEQRES 11 B 244 GLY ARG ILE ILE ASN ILE SER SER VAL VAL ALA HIS PHE SEQRES 12 B 244 ALA ASN PRO GLY GLN ALA ASN TYR SER ALA ALA LYS ALA SEQRES 13 B 244 GLY ILE GLU ALA PHE SER ARG SER LEU ALA LYS GLU MET SEQRES 14 B 244 GLY SER ARG GLN ILE THR VAL ASN SER VAL ALA PRO GLY SEQRES 15 B 244 PHE ILE ALA THR GLU MET THR ASP ALA LEU SER GLU ASP SEQRES 16 B 244 ILE ARG LYS LYS MET SER ASP GLN VAL ALA LEU ASN ARG SEQRES 17 B 244 LEU GLY GLU PRO GLN ASP ILE ALA ASN ALA VAL SER PHE SEQRES 18 B 244 LEU ALA SER ASP LYS ALA GLY TYR ILE THR GLY THR VAL SEQRES 19 B 244 LEU HIS VAL ASN GLY GLY LEU TYR MET ALA SEQRES 1 C 244 MET ALA GLN GLU ARG LYS VAL ALA LEU VAL THR GLY ALA SEQRES 2 C 244 SER ARG GLY ILE GLY ALA ALA ILE ALA GLN GLN LEU ILE SEQRES 3 C 244 GLN ASP GLY TYR PHE VAL VAL GLY THR ALA THR SER GLU SEQRES 4 C 244 SER GLY ALA GLN LYS LEU THR ASP SER PHE GLY GLU GLN SEQRES 5 C 244 GLY ALA GLY LEU ALA LEU ASP VAL ARG ASN LEU ASP GLU SEQRES 6 C 244 ILE GLU ALA VAL VAL SER HIS ILE GLU GLN ASN TYR GLY SEQRES 7 C 244 PRO VAL LEU VAL LEU VAL ASN ASN ALA GLY ILE THR LYS SEQRES 8 C 244 ASP ASN LEU LEU LEU ARG MET SER GLU ASP ASP TRP ASP SEQRES 9 C 244 ASP ILE LEU ASN ILE HIS LEU LYS ALA VAL TYR ARG LEU SEQRES 10 C 244 SER LYS ARG VAL LEU LYS GLY MET THR LYS ALA ARG PHE SEQRES 11 C 244 GLY ARG ILE ILE ASN ILE SER SER VAL VAL ALA HIS PHE SEQRES 12 C 244 ALA ASN PRO GLY GLN ALA ASN TYR SER ALA ALA LYS ALA SEQRES 13 C 244 GLY ILE GLU ALA PHE SER ARG SER LEU ALA LYS GLU MET SEQRES 14 C 244 GLY SER ARG GLN ILE THR VAL ASN SER VAL ALA PRO GLY SEQRES 15 C 244 PHE ILE ALA THR GLU MET THR ASP ALA LEU SER GLU ASP SEQRES 16 C 244 ILE ARG LYS LYS MET SER ASP GLN VAL ALA LEU ASN ARG SEQRES 17 C 244 LEU GLY GLU PRO GLN ASP ILE ALA ASN ALA VAL SER PHE SEQRES 18 C 244 LEU ALA SER ASP LYS ALA GLY TYR ILE THR GLY THR VAL SEQRES 19 C 244 LEU HIS VAL ASN GLY GLY LEU TYR MET ALA SEQRES 1 D 244 MET ALA GLN GLU ARG LYS VAL ALA LEU VAL THR GLY ALA SEQRES 2 D 244 SER ARG GLY ILE GLY ALA ALA ILE ALA GLN GLN LEU ILE SEQRES 3 D 244 GLN ASP GLY TYR PHE VAL VAL GLY THR ALA THR SER GLU SEQRES 4 D 244 SER GLY ALA GLN LYS LEU THR ASP SER PHE GLY GLU GLN SEQRES 5 D 244 GLY ALA GLY LEU ALA LEU ASP VAL ARG ASN LEU ASP GLU SEQRES 6 D 244 ILE GLU ALA VAL VAL SER HIS ILE GLU GLN ASN TYR GLY SEQRES 7 D 244 PRO VAL LEU VAL LEU VAL ASN ASN ALA GLY ILE THR LYS SEQRES 8 D 244 ASP ASN LEU LEU LEU ARG MET SER GLU ASP ASP TRP ASP SEQRES 9 D 244 ASP ILE LEU ASN ILE HIS LEU LYS ALA VAL TYR ARG LEU SEQRES 10 D 244 SER LYS ARG VAL LEU LYS GLY MET THR LYS ALA ARG PHE SEQRES 11 D 244 GLY ARG ILE ILE ASN ILE SER SER VAL VAL ALA HIS PHE SEQRES 12 D 244 ALA ASN PRO GLY GLN ALA ASN TYR SER ALA ALA LYS ALA SEQRES 13 D 244 GLY ILE GLU ALA PHE SER ARG SER LEU ALA LYS GLU MET SEQRES 14 D 244 GLY SER ARG GLN ILE THR VAL ASN SER VAL ALA PRO GLY SEQRES 15 D 244 PHE ILE ALA THR GLU MET THR ASP ALA LEU SER GLU ASP SEQRES 16 D 244 ILE ARG LYS LYS MET SER ASP GLN VAL ALA LEU ASN ARG SEQRES 17 D 244 LEU GLY GLU PRO GLN ASP ILE ALA ASN ALA VAL SER PHE SEQRES 18 D 244 LEU ALA SER ASP LYS ALA GLY TYR ILE THR GLY THR VAL SEQRES 19 D 244 LEU HIS VAL ASN GLY GLY LEU TYR MET ALA HET MLH C 301 26 HETNAM MLH ETHYL 6-BROMANYL-2-[(DIMETHYLAMINO)METHYL]-5-OXIDANYL- HETNAM 2 MLH 1-PHENYL-INDOLE-3-CARBOXYLATE FORMUL 5 MLH C20 H21 BR N2 O3 FORMUL 6 HOH *162(H2 O) HELIX 1 AA1 ARG A 15 ASP A 28 1 14 HELIX 2 AA2 SER A 38 GLY A 50 1 13 HELIX 3 AA3 ASN A 62 TYR A 77 1 16 HELIX 4 AA4 LEU A 94 MET A 98 5 5 HELIX 5 AA5 SER A 99 ARG A 129 1 31 HELIX 6 AA6 SER A 138 HIS A 142 5 5 HELIX 7 AA7 GLN A 148 MET A 169 1 22 HELIX 8 AA8 THR A 186 ALA A 191 1 6 HELIX 9 AA9 GLU A 194 VAL A 204 1 11 HELIX 10 AB1 GLU A 211 SER A 224 1 14 HELIX 11 AB2 ASP A 225 GLY A 228 5 4 HELIX 12 AB3 ARG B 15 ASP B 28 1 14 HELIX 13 AB4 SER B 38 PHE B 49 1 12 HELIX 14 AB5 ASN B 62 TYR B 77 1 16 HELIX 15 AB6 LEU B 94 MET B 98 5 5 HELIX 16 AB7 SER B 99 ARG B 129 1 31 HELIX 17 AB8 SER B 138 HIS B 142 5 5 HELIX 18 AB9 GLN B 148 GLY B 170 1 23 HELIX 19 AC1 GLU B 194 VAL B 204 1 11 HELIX 20 AC2 GLU B 211 SER B 224 1 14 HELIX 21 AC3 ASP B 225 GLY B 228 5 4 HELIX 22 AC4 ARG C 15 ASP C 28 1 14 HELIX 23 AC5 SER C 38 GLY C 50 1 13 HELIX 24 AC6 ASN C 62 TYR C 77 1 16 HELIX 25 AC7 SER C 99 LEU C 111 1 13 HELIX 26 AC8 LEU C 111 ARG C 129 1 19 HELIX 27 AC9 SER C 152 GLY C 170 1 19 HELIX 28 AD1 LYS C 199 VAL C 204 5 6 HELIX 29 AD2 GLU C 211 SER C 224 1 14 HELIX 30 AD3 ARG D 15 GLY D 29 1 15 HELIX 31 AD4 SER D 38 PHE D 49 1 12 HELIX 32 AD5 ASN D 62 TYR D 77 1 16 HELIX 33 AD6 SER D 99 LEU D 111 1 13 HELIX 34 AD7 LEU D 111 VAL D 121 1 11 HELIX 35 AD8 VAL D 121 ARG D 129 1 9 HELIX 36 AD9 SER D 152 GLY D 170 1 19 HELIX 37 AE1 MET D 200 VAL D 204 1 5 HELIX 38 AE2 GLU D 211 SER D 224 1 14 HELIX 39 AE3 ASP D 225 GLY D 228 5 4 SHEET 1 AA1 7 GLY A 53 ALA A 57 0 SHEET 2 AA1 7 TYR A 30 ALA A 36 1 N GLY A 34 O LEU A 56 SHEET 3 AA1 7 LYS A 6 VAL A 10 1 N LYS A 6 O PHE A 31 SHEET 4 AA1 7 VAL A 80 ASN A 85 1 O VAL A 84 N LEU A 9 SHEET 5 AA1 7 GLY A 131 ILE A 136 1 O ARG A 132 N LEU A 83 SHEET 6 AA1 7 ILE A 174 PRO A 181 1 O ASN A 177 N ASN A 135 SHEET 7 AA1 7 VAL A 234 VAL A 237 1 O LEU A 235 N SER A 178 SHEET 1 AA2 7 GLY B 55 ALA B 57 0 SHEET 2 AA2 7 PHE B 31 ALA B 36 1 N GLY B 34 O LEU B 56 SHEET 3 AA2 7 VAL B 7 VAL B 10 1 N ALA B 8 O PHE B 31 SHEET 4 AA2 7 VAL B 80 ASN B 85 1 O VAL B 84 N LEU B 9 SHEET 5 AA2 7 GLY B 131 ILE B 136 1 O ARG B 132 N LEU B 83 SHEET 6 AA2 7 ILE B 174 PRO B 181 1 O ASN B 177 N ASN B 135 SHEET 7 AA2 7 VAL B 234 VAL B 237 1 O LEU B 235 N SER B 178 SHEET 1 AA3 7 GLY C 53 ALA C 57 0 SHEET 2 AA3 7 PHE C 31 ALA C 36 1 N GLY C 34 O ALA C 54 SHEET 3 AA3 7 VAL C 7 THR C 11 1 N ALA C 8 O PHE C 31 SHEET 4 AA3 7 VAL C 80 ASN C 85 1 O VAL C 82 N LEU C 9 SHEET 5 AA3 7 GLY C 131 ILE C 136 1 O ILE C 134 N LEU C 83 SHEET 6 AA3 7 ILE C 174 PRO C 181 1 O ASN C 177 N ASN C 135 SHEET 7 AA3 7 VAL C 234 VAL C 237 1 O LEU C 235 N SER C 178 SHEET 1 AA4 7 GLY D 53 ALA D 57 0 SHEET 2 AA4 7 PHE D 31 ALA D 36 1 N GLY D 34 O ALA D 54 SHEET 3 AA4 7 VAL D 7 VAL D 10 1 N VAL D 10 O VAL D 33 SHEET 4 AA4 7 VAL D 80 ASN D 85 1 O VAL D 82 N LEU D 9 SHEET 5 AA4 7 GLY D 131 ILE D 136 1 O ARG D 132 N LEU D 83 SHEET 6 AA4 7 ILE D 174 PRO D 181 1 O ASN D 177 N ASN D 135 SHEET 7 AA4 7 VAL D 234 VAL D 237 1 O LEU D 235 N SER D 178 SITE 1 AC1 10 TRP C 103 LEU C 107 LEU C 111 ALA C 153 SITE 2 AC1 10 GLY C 157 LEU D 107 LEU D 111 LYS D 112 SITE 3 AC1 10 GLY D 157 PHE D 161 CRYST1 60.065 128.738 65.747 90.00 113.06 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016649 0.000000 0.007086 0.00000 SCALE2 0.000000 0.007768 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016530 0.00000