HEADER HYDROLASE 20-OCT-19 6T6X TITLE STRUCTURE OF THE BOTTROMYCIN EPIMERASE BOTH IN COMPLEX WITH SUBSTRATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: BOTH; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES SP. BC16019; SOURCE 3 ORGANISM_TAXID: 1109705; SOURCE 4 GENE: BOTH; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VARIANT: ROSETTA 2 KEYWDS BOTTROMYCIN, RIPP, EPIMERASE, ABH, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR J.KOEHNKE,A.SIKANDAR REVDAT 3 24-JAN-24 6T6X 1 REMARK REVDAT 2 26-AUG-20 6T6X 1 JRNL REVDAT 1 15-JUL-20 6T6X 0 JRNL AUTH A.SIKANDAR,L.FRANZ,S.ADAM,J.SANTOS-ABERTURAS,L.HORBAL, JRNL AUTH 2 A.LUZHETSKYY,A.W.TRUMAN,O.V.KALININA,J.KOEHNKE JRNL TITL THE BOTTROMYCIN EPIMERASE BOTH DEFINES A GROUP OF ATYPICAL JRNL TITL 2 ALPHA / BETA-HYDROLASE-FOLD ENZYMES. JRNL REF NAT.CHEM.BIOL. V. 16 1013 2020 JRNL REFN ESSN 1552-4469 JRNL PMID 32601484 JRNL DOI 10.1038/S41589-020-0569-Y REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH P.V.AFONINE,R.W.GROSSE-KUNSTLEVE,N.ECHOLS,J.J.HEADD, REMARK 1 AUTH 2 N.W.MORIARTY,M.MUSTYAKIMOV,T.C.TERWILLIGER,A.URZHUMTSEV, REMARK 1 AUTH 3 P.H.ZWART,P.D.ADAMS REMARK 1 TITL TOWARDS AUTOMATED CRYSTALLOGRAPHIC STRUCTURE REFINEMENT WITH REMARK 1 TITL 2 PHENIX.REFINE. REMARK 1 REF ACTA CRYSTALLOGR. D BIOL. V. 68 352 2012 REMARK 1 REF 2 CRYSTALLOGR. REMARK 1 REFN ESSN 1399-0047 REMARK 1 PMID 22505256 REMARK 1 DOI 10.1107/S0907444912001308 REMARK 2 REMARK 2 RESOLUTION. 1.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.13_2998 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.77 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 65761 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.167 REMARK 3 R VALUE (WORKING SET) : 0.166 REMARK 3 FREE R VALUE : 0.175 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990 REMARK 3 FREE R VALUE TEST SET COUNT : 3282 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.7700 - 3.5500 0.94 2770 145 0.1691 0.1889 REMARK 3 2 3.5500 - 2.8200 0.97 2730 145 0.1616 0.1475 REMARK 3 3 2.8200 - 2.4600 0.97 2657 171 0.1576 0.1681 REMARK 3 4 2.4600 - 2.2400 0.97 2693 151 0.1462 0.1340 REMARK 3 5 2.2400 - 2.0800 0.99 2707 137 0.1454 0.1615 REMARK 3 6 2.0800 - 1.9600 0.99 2755 138 0.1436 0.1548 REMARK 3 7 1.9600 - 1.8600 0.99 2723 147 0.1549 0.1647 REMARK 3 8 1.8600 - 1.7800 1.00 2747 149 0.1573 0.1606 REMARK 3 9 1.7800 - 1.7100 0.98 2659 144 0.1678 0.1796 REMARK 3 10 1.7100 - 1.6500 0.99 2731 152 0.1688 0.1897 REMARK 3 11 1.6500 - 1.6000 1.00 2700 116 0.1673 0.1828 REMARK 3 12 1.6000 - 1.5500 1.00 2765 125 0.1678 0.2058 REMARK 3 13 1.5500 - 1.5100 1.00 2720 154 0.1710 0.1856 REMARK 3 14 1.5100 - 1.4700 1.00 2731 151 0.1732 0.1709 REMARK 3 15 1.4700 - 1.4400 1.00 2697 149 0.1799 0.2125 REMARK 3 16 1.4400 - 1.4100 0.99 2703 128 0.1900 0.2108 REMARK 3 17 1.4100 - 1.3800 1.00 2739 147 0.1895 0.2187 REMARK 3 18 1.3800 - 1.3600 1.00 2696 141 0.1990 0.2288 REMARK 3 19 1.3600 - 1.3300 1.00 2725 134 0.2036 0.2259 REMARK 3 20 1.3300 - 1.3100 1.00 2720 121 0.2031 0.2046 REMARK 3 21 1.3100 - 1.2900 1.00 2724 154 0.2009 0.1862 REMARK 3 22 1.2900 - 1.2700 1.00 2682 142 0.2114 0.2101 REMARK 3 23 1.2700 - 1.2500 1.00 2705 141 0.2115 0.2585 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.101 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.264 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 9.71 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.29 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 2036 REMARK 3 ANGLE : 1.229 2763 REMARK 3 CHIRALITY : 0.081 293 REMARK 3 PLANARITY : 0.008 374 REMARK 3 DIHEDRAL : 15.230 726 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 10 THROUGH 65 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.5873 -11.3871 -34.6068 REMARK 3 T TENSOR REMARK 3 T11: 0.0393 T22: 0.0617 REMARK 3 T33: 0.0402 T12: -0.0010 REMARK 3 T13: 0.0020 T23: -0.0012 REMARK 3 L TENSOR REMARK 3 L11: 0.8391 L22: 1.8811 REMARK 3 L33: 1.0837 L12: 0.1361 REMARK 3 L13: -0.0481 L23: -0.0459 REMARK 3 S TENSOR REMARK 3 S11: -0.0050 S12: 0.0833 S13: -0.0587 REMARK 3 S21: -0.0821 S22: 0.0288 S23: -0.1160 REMARK 3 S31: 0.0732 S32: 0.0400 S33: -0.0146 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 66 THROUGH 102 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.8437 -1.7277 -35.0092 REMARK 3 T TENSOR REMARK 3 T11: 0.0507 T22: 0.0319 REMARK 3 T33: 0.0327 T12: -0.0107 REMARK 3 T13: 0.0017 T23: 0.0333 REMARK 3 L TENSOR REMARK 3 L11: 1.6322 L22: 1.7984 REMARK 3 L33: 2.6228 L12: -0.0856 REMARK 3 L13: 0.0524 L23: 1.0224 REMARK 3 S TENSOR REMARK 3 S11: -0.0161 S12: 0.0501 S13: 0.0946 REMARK 3 S21: -0.0842 S22: -0.0439 S23: 0.0408 REMARK 3 S31: 0.0336 S32: -0.0836 S33: 0.0391 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 103 THROUGH 141 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.5445 -10.7368 -30.2327 REMARK 3 T TENSOR REMARK 3 T11: 0.0324 T22: 0.0480 REMARK 3 T33: 0.0570 T12: -0.0144 REMARK 3 T13: -0.0006 T23: 0.0107 REMARK 3 L TENSOR REMARK 3 L11: 1.5075 L22: 1.6931 REMARK 3 L33: 0.9336 L12: 0.2678 REMARK 3 L13: -0.0996 L23: -0.0494 REMARK 3 S TENSOR REMARK 3 S11: -0.0156 S12: 0.0128 S13: 0.0890 REMARK 3 S21: 0.0597 S22: -0.0030 S23: 0.1290 REMARK 3 S31: -0.0215 S32: -0.0584 S33: 0.0183 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 142 THROUGH 167 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.7045 -0.3289 -11.6700 REMARK 3 T TENSOR REMARK 3 T11: 0.1303 T22: 0.1304 REMARK 3 T33: 0.0774 T12: 0.0083 REMARK 3 T13: 0.0150 T23: -0.0123 REMARK 3 L TENSOR REMARK 3 L11: 1.4041 L22: 3.7692 REMARK 3 L33: 1.4584 L12: -0.9718 REMARK 3 L13: 0.5258 L23: -0.7502 REMARK 3 S TENSOR REMARK 3 S11: -0.0705 S12: -0.2473 S13: 0.1060 REMARK 3 S21: 0.3336 S22: 0.0218 S23: 0.0418 REMARK 3 S31: -0.0322 S32: -0.1154 S33: 0.0392 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 168 THROUGH 182 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.1898 -9.0376 -17.2529 REMARK 3 T TENSOR REMARK 3 T11: 0.0886 T22: 0.0871 REMARK 3 T33: 0.0864 T12: 0.0046 REMARK 3 T13: 0.0022 T23: -0.0017 REMARK 3 L TENSOR REMARK 3 L11: 0.9367 L22: 3.7911 REMARK 3 L33: 1.3320 L12: 1.3201 REMARK 3 L13: 0.2531 L23: -1.1827 REMARK 3 S TENSOR REMARK 3 S11: 0.0604 S12: -0.0894 S13: -0.0321 REMARK 3 S21: 0.2568 S22: -0.0524 S23: 0.0211 REMARK 3 S31: -0.0240 S32: -0.0103 S33: -0.0275 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 183 THROUGH 221 ) REMARK 3 ORIGIN FOR THE GROUP (A): -23.1717 -8.4506 -25.9977 REMARK 3 T TENSOR REMARK 3 T11: 0.0584 T22: 0.0897 REMARK 3 T33: 0.0716 T12: -0.0056 REMARK 3 T13: 0.0136 T23: 0.0031 REMARK 3 L TENSOR REMARK 3 L11: 0.8811 L22: 1.3319 REMARK 3 L33: 0.2969 L12: 0.4876 REMARK 3 L13: 0.1908 L23: 0.2344 REMARK 3 S TENSOR REMARK 3 S11: -0.0464 S12: 0.0195 S13: 0.0905 REMARK 3 S21: -0.0050 S22: 0.0170 S23: 0.2029 REMARK 3 S31: -0.0071 S32: -0.0674 S33: 0.0430 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 222 THROUGH 262 ) REMARK 3 ORIGIN FOR THE GROUP (A): -20.8032 -21.4893 -24.0328 REMARK 3 T TENSOR REMARK 3 T11: 0.0806 T22: 0.0477 REMARK 3 T33: 0.0506 T12: -0.0218 REMARK 3 T13: 0.0106 T23: 0.0115 REMARK 3 L TENSOR REMARK 3 L11: 1.8704 L22: 0.8278 REMARK 3 L33: 1.0295 L12: -0.1446 REMARK 3 L13: -0.3238 L23: 0.0378 REMARK 3 S TENSOR REMARK 3 S11: -0.0295 S12: -0.0499 S13: -0.0598 REMARK 3 S21: 0.0682 S22: 0.0300 S23: 0.0791 REMARK 3 S31: 0.1204 S32: -0.0478 S33: 0.0061 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6T6X COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 21-OCT-19. REMARK 100 THE DEPOSITION ID IS D_1292104925. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-OCT-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, DESY REMARK 200 BEAMLINE : P11 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.033200 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 65761 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.250 REMARK 200 RESOLUTION RANGE LOW (A) : 44.770 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 4.300 REMARK 200 R MERGE (I) : 0.07800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.27 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.72500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6T6H REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 35.82 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.92 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MES, AMMONIUM SULFATE, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 33.32750 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 40.14250 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 44.66850 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 33.32750 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 40.14250 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 44.66850 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 33.32750 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 40.14250 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 44.66850 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 33.32750 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 40.14250 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 44.66850 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 403 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 516 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 563 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 613 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 616 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 636 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 SER A -10 REMARK 465 SER A -9 REMARK 465 GLY A -8 REMARK 465 LEU A -7 REMARK 465 VAL A -6 REMARK 465 PRO A -5 REMARK 465 ARG A -4 REMARK 465 GLY A -3 REMARK 465 SER A -2 REMARK 465 HIS A -1 REMARK 465 MET A 0 REMARK 465 VAL A 1 REMARK 465 ARG A 2 REMARK 465 ASP A 3 REMARK 465 GLY A 4 REMARK 465 ASN A 5 REMARK 465 GLY A 6 REMARK 465 THR A 7 REMARK 465 SER A 8 REMARK 465 ARG A 9 REMARK 465 GLU A 263 REMARK 465 GLY A 264 REMARK 465 GLY A 265 REMARK 465 HIS A 266 REMARK 465 GLY A 267 REMARK 465 THR A 268 REMARK 465 GLY A 269 REMARK 465 ASP A 270 REMARK 465 ALA A 271 REMARK 465 PRO A 272 REMARK 465 ALA A 273 REMARK 465 GLU A 274 REMARK 465 ALA A 275 REMARK 465 ARG A 276 REMARK 465 THR A 277 REMARK 465 THR A 278 REMARK 465 GLY A 279 REMARK 465 ASP A 280 REMARK 465 ALA A 281 REMARK 465 PRO A 282 REMARK 465 ALA A 283 REMARK 465 GLU A 284 REMARK 465 ALA A 285 REMARK 465 ARG A 286 REMARK 465 ALA A 287 REMARK 465 SER A 288 REMARK 465 GLY A 289 REMARK 465 THR A 290 REMARK 465 GLY A 291 REMARK 465 VAL A 292 REMARK 465 VAL A 293 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HH11 ARG A 100 O HOH A 402 1.44 REMARK 500 OE2 GLU A 80 HH21 ARG A 85 1.53 REMARK 500 OD1 ASP A 163 O HOH A 401 1.80 REMARK 500 O HOH A 560 O HOH A 565 1.82 REMARK 500 O HOH A 414 O HOH A 444 1.84 REMARK 500 O HOH A 615 O HOH A 635 1.86 REMARK 500 O HOH A 646 O HOH A 695 1.88 REMARK 500 O HOH A 472 O HOH A 667 1.91 REMARK 500 O HOH A 435 O HOH A 548 1.92 REMARK 500 O HOH A 682 O HOH A 689 1.94 REMARK 500 O HOH A 426 O HOH A 627 1.95 REMARK 500 O HOH A 541 O HOH A 682 2.01 REMARK 500 O HOH A 429 O HOH A 580 2.01 REMARK 500 O HOH A 507 O HOH A 643 2.03 REMARK 500 O HOH A 414 O HOH A 603 2.03 REMARK 500 NH1 ARG A 100 O HOH A 402 2.06 REMARK 500 OE2 GLU A 80 NH2 ARG A 85 2.07 REMARK 500 O HOH A 497 O HOH A 553 2.11 REMARK 500 O HOH A 410 O HOH A 444 2.12 REMARK 500 OD2 ASP A 44 O HOH A 404 2.15 REMARK 500 O HOH A 404 O HOH A 566 2.15 REMARK 500 O HOH A 431 O HOH A 615 2.15 REMARK 500 OD2 ASP A 220 O HOH A 405 2.16 REMARK 500 O HOH A 431 O HOH A 635 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 459 O HOH A 459 3554 1.29 REMARK 500 O HOH A 473 O HOH A 473 2555 1.30 REMARK 500 O HOH A 422 O HOH A 565 2555 2.00 REMARK 500 O HOH A 521 O HOH A 557 8444 2.06 REMARK 500 O HOH A 423 O HOH A 459 4554 2.10 REMARK 500 O HOH A 404 O HOH A 418 2555 2.11 REMARK 500 O HOH A 447 O HOH A 635 2555 2.14 REMARK 500 O HOH A 534 O HOH A 651 8544 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 42 46.66 -95.72 REMARK 500 VAL A 76 -69.74 -127.93 REMARK 500 PHE A 109 -124.30 57.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MQW A 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6T6H RELATED DB: PDB REMARK 900 CONTAINS APO PROTEIN DBREF 6T6X A 2 293 UNP K4MHV9 K4MHV9_9ACTN 2 293 SEQADV 6T6X HIS A -16 UNP K4MHV9 EXPRESSION TAG SEQADV 6T6X HIS A -15 UNP K4MHV9 EXPRESSION TAG SEQADV 6T6X HIS A -14 UNP K4MHV9 EXPRESSION TAG SEQADV 6T6X HIS A -13 UNP K4MHV9 EXPRESSION TAG SEQADV 6T6X HIS A -12 UNP K4MHV9 EXPRESSION TAG SEQADV 6T6X HIS A -11 UNP K4MHV9 EXPRESSION TAG SEQADV 6T6X SER A -10 UNP K4MHV9 EXPRESSION TAG SEQADV 6T6X SER A -9 UNP K4MHV9 EXPRESSION TAG SEQADV 6T6X GLY A -8 UNP K4MHV9 EXPRESSION TAG SEQADV 6T6X LEU A -7 UNP K4MHV9 EXPRESSION TAG SEQADV 6T6X VAL A -6 UNP K4MHV9 EXPRESSION TAG SEQADV 6T6X PRO A -5 UNP K4MHV9 EXPRESSION TAG SEQADV 6T6X ARG A -4 UNP K4MHV9 EXPRESSION TAG SEQADV 6T6X GLY A -3 UNP K4MHV9 EXPRESSION TAG SEQADV 6T6X SER A -2 UNP K4MHV9 EXPRESSION TAG SEQADV 6T6X HIS A -1 UNP K4MHV9 EXPRESSION TAG SEQADV 6T6X MET A 0 UNP K4MHV9 EXPRESSION TAG SEQADV 6T6X VAL A 1 UNP K4MHV9 EXPRESSION TAG SEQRES 1 A 310 HIS HIS HIS HIS HIS HIS SER SER GLY LEU VAL PRO ARG SEQRES 2 A 310 GLY SER HIS MET VAL ARG ASP GLY ASN GLY THR SER ARG SEQRES 3 A 310 ARG ASP VAL PHE GLU VAL PHE SER ARG ASP GLY THR PRO SEQRES 4 A 310 ILE ARG GLY PHE SER ARG PRO GLY PRO GLY GLU THR VAL SEQRES 5 A 310 VAL LEU VAL HIS GLY VAL ALA MET ASP ARG ARG ILE TRP SEQRES 6 A 310 ALA GLU SER GLY PHE LEU ASP ALA LEU PRO ASP ALA HIS SEQRES 7 A 310 VAL LEU ALA LEU ASP LEU ARG GLY ARG GLY GLU SER GLY SEQRES 8 A 310 ARG VAL GLY THR ALA GLU GLY HIS ALA LEU ARG ARG TYR SEQRES 9 A 310 VAL GLU ASP VAL ARG ALA VAL LEU ASP ARG PHE GLY ARG SEQRES 10 A 310 ALA ARG TYR SER LEU PHE GLY THR PHE PHE GLY GLY ARG SEQRES 11 A 310 ILE ALA LEU GLN VAL ALA ALA VAL ASP THR ARG VAL ALA SEQRES 12 A 310 ARG ALA PHE SER PHE CYS ALA HIS ALA GLU GLN VAL GLU SEQRES 13 A 310 ILE PRO GLU ASP ALA VAL GLU GLU GLU ALA VAL ALA VAL SEQRES 14 A 310 GLU GLY PRO GLY GLY HIS ALA TYR LEU ARG ASP HIS PHE SEQRES 15 A 310 THR GLY ARG GLY ALA PRO PRO TRP MET VAL GLU ALA CYS SEQRES 16 A 310 ALA ARG VAL ASP PRO GLY GLU LEU GLY ALA ALA THR ARG SEQRES 17 A 310 GLY LEU LEU HIS GLY SER ASP ARG ARG THR GLU ARG GLY SEQRES 18 A 310 HIS PRO ASP GLN GLU LEU VAL LEU ILE THR ALA ASP GLY SEQRES 19 A 310 ASP ALA ASP LEU ALA PRO PHE HIS ALA GLY GLU ARG ARG SEQRES 20 A 310 LEU GLY ALA HIS LEU TRP LEU VAL ASP ALA PRO THR ARG SEQRES 21 A 310 ILE LYS ALA ALA GLY ARG LEU ALA GLU VAL GLY ARG ARG SEQRES 22 A 310 VAL ALA GLY VAL LEU ALA GLU GLY GLY HIS GLY THR GLY SEQRES 23 A 310 ASP ALA PRO ALA GLU ALA ARG THR THR GLY ASP ALA PRO SEQRES 24 A 310 ALA GLU ALA ARG ALA SER GLY THR GLY VAL VAL HET MQW A 301 108 HETNAM MQW (4~{R})-2-[(1~{R})-1-[[(2~{S})-2-[[(2~{S})-3-METHYL-2- HETNAM 2 MQW [[(4~{Z},6~{S},9~{S},12~{S})-2,8,11- HETNAM 3 MQW TRIS(OXIDANYLIDENE)-6,9-DI(PROPAN-2-YL)-1,4,7,10- HETNAM 4 MQW TETRAZABICYCLO[10.3.0]PENTADEC-4-EN-5- HETNAM 5 MQW YL]AMINO]BUTANOYL]AMINO]-3-PHENYL-PROPANOYL]AMINO]-3- HETNAM 6 MQW OXIDANYL-3-OXIDANYLIDENE-PROPYL]-4,5-DIHYDRO-1,3- HETNAM 7 MQW THIAZOLE-4-CARBOXYLIC ACID FORMUL 2 MQW C38 H54 N8 O9 S FORMUL 3 HOH *306(H2 O) HELIX 1 AA1 ARG A 46 SER A 51 1 6 HELIX 2 AA2 PHE A 53 LEU A 57 5 5 HELIX 3 AA3 ALA A 79 HIS A 82 5 4 HELIX 4 AA4 ALA A 83 GLY A 99 1 17 HELIX 5 AA5 PHE A 109 ASP A 122 1 14 HELIX 6 AA6 PRO A 141 GLY A 154 1 14 HELIX 7 AA7 GLY A 156 ARG A 168 1 13 HELIX 8 AA8 PRO A 171 CYS A 178 1 8 HELIX 9 AA9 ALA A 179 VAL A 181 5 3 HELIX 10 AB1 ASP A 182 LEU A 193 1 12 HELIX 11 AB2 LEU A 221 GLY A 232 1 12 HELIX 12 AB3 THR A 242 ALA A 247 1 6 HELIX 13 AB4 ARG A 249 ALA A 262 1 14 SHEET 1 AA1 8 ASP A 11 PHE A 16 0 SHEET 2 AA1 8 PRO A 22 ARG A 28 -1 O ILE A 23 N VAL A 15 SHEET 3 AA1 8 HIS A 61 LEU A 65 -1 O VAL A 62 N ARG A 28 SHEET 4 AA1 8 THR A 34 VAL A 38 1 N VAL A 35 O LEU A 63 SHEET 5 AA1 8 TYR A 103 THR A 108 1 O PHE A 106 N VAL A 38 SHEET 6 AA1 8 VAL A 125 PHE A 131 1 O PHE A 131 N GLY A 107 SHEET 7 AA1 8 GLU A 209 ALA A 215 1 O VAL A 211 N SER A 130 SHEET 8 AA1 8 HIS A 234 VAL A 238 1 O HIS A 234 N LEU A 212 SITE 1 AC1 22 GLY A 40 VAL A 41 PHE A 109 PHE A 110 SITE 2 AC1 22 ARG A 113 CYS A 132 ALA A 133 HIS A 134 SITE 3 AC1 22 GLU A 148 HIS A 164 PHE A 165 MET A 174 SITE 4 AC1 22 THR A 190 LEU A 193 ARG A 243 HOH A 416 SITE 5 AC1 22 HOH A 421 HOH A 451 HOH A 471 HOH A 491 SITE 6 AC1 22 HOH A 519 HOH A 574 CRYST1 66.655 80.285 89.337 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015003 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012456 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011194 0.00000