HEADER HYDROLASE 20-OCT-19 6T6Z TITLE STRUCTURE OF THE BOTTROMYCIN EPIMERASE BOTH IN COMPLEX WITH A TITLE 2 BOTTROMYCIN A2 DERIVATIVE COMPND MOL_ID: 1; COMPND 2 MOLECULE: BOTH; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES SP. BC16019; SOURCE 3 ORGANISM_TAXID: 1109705; SOURCE 4 GENE: BOTH; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VARIANT: ROSETTA 2 KEYWDS BOTTROMYCIN, RIPP, EPIMERASE, ABH, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR J.KOEHNKE,A.SIKANDAR REVDAT 3 24-JAN-24 6T6Z 1 REMARK REVDAT 2 26-AUG-20 6T6Z 1 JRNL REVDAT 1 15-JUL-20 6T6Z 0 JRNL AUTH A.SIKANDAR,L.FRANZ,S.ADAM,J.SANTOS-ABERTURAS,L.HORBAL, JRNL AUTH 2 A.LUZHETSKYY,A.W.TRUMAN,O.V.KALININA,J.KOEHNKE JRNL TITL THE BOTTROMYCIN EPIMERASE BOTH DEFINES A GROUP OF ATYPICAL JRNL TITL 2 ALPHA / BETA-HYDROLASE-FOLD ENZYMES. JRNL REF NAT.CHEM.BIOL. V. 16 1013 2020 JRNL REFN ESSN 1552-4469 JRNL PMID 32601484 JRNL DOI 10.1038/S41589-020-0569-Y REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH P.V.AFONINE,R.W.GROSSE-KUNSTLEVE,N.ECHOLS,J.J.HEADD, REMARK 1 AUTH 2 N.W.MORIARTY,M.MUSTYAKIMOV,T.C.TERWILLIGER,A.URZHUMTSEV, REMARK 1 AUTH 3 P.H.ZWART,P.D.ADAMS REMARK 1 TITL TOWARDS AUTOMATED CRYSTALLOGRAPHIC STRUCTURE REFINEMENT WITH REMARK 1 TITL 2 PHENIX.REFINE. REMARK 1 REF ACTA CRYSTALLOGR. D BIOL. V. 68 352 2012 REMARK 1 REF 2 CRYSTALLOGR. REMARK 1 REFN ESSN 1399-0047 REMARK 1 PMID 22505256 REMARK 1 DOI 10.1107/S0907444912001308 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.13_2998 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.52 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 26135 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.171 REMARK 3 R VALUE (WORKING SET) : 0.169 REMARK 3 FREE R VALUE : 0.207 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.960 REMARK 3 FREE R VALUE TEST SET COUNT : 1295 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.5200 - 3.5400 0.97 2874 138 0.1636 0.1980 REMARK 3 2 3.5400 - 2.8100 1.00 2808 143 0.1617 0.1864 REMARK 3 3 2.8100 - 2.4500 1.00 2795 132 0.1543 0.1881 REMARK 3 4 2.4500 - 2.2300 0.99 2765 132 0.1538 0.1965 REMARK 3 5 2.2300 - 2.0700 0.99 2719 156 0.1599 0.2218 REMARK 3 6 2.0700 - 1.9500 0.99 2730 154 0.1704 0.2082 REMARK 3 7 1.9500 - 1.8500 0.99 2694 158 0.2043 0.2627 REMARK 3 8 1.8500 - 1.7700 0.99 2753 132 0.2272 0.2363 REMARK 3 9 1.7700 - 1.7000 0.99 2702 150 0.2460 0.2880 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.164 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.166 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 17.48 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.92 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 2046 REMARK 3 ANGLE : 0.902 2780 REMARK 3 CHIRALITY : 0.050 295 REMARK 3 PLANARITY : 0.005 375 REMARK 3 DIHEDRAL : 12.304 1175 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 10 THROUGH 28 ) REMARK 3 ORIGIN FOR THE GROUP (A): -27.7555 -3.8806 -6.2233 REMARK 3 T TENSOR REMARK 3 T11: 0.1561 T22: 0.1652 REMARK 3 T33: 0.1278 T12: 0.0112 REMARK 3 T13: 0.0051 T23: -0.0063 REMARK 3 L TENSOR REMARK 3 L11: 1.3944 L22: 3.3659 REMARK 3 L33: 1.3787 L12: 0.2384 REMARK 3 L13: -0.1579 L23: 0.1049 REMARK 3 S TENSOR REMARK 3 S11: 0.0579 S12: -0.1792 S13: 0.0265 REMARK 3 S21: 0.0359 S22: -0.1452 S23: 0.3105 REMARK 3 S31: 0.0106 S32: -0.0877 S33: 0.0428 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 29 THROUGH 65 ) REMARK 3 ORIGIN FOR THE GROUP (A): -26.0501 -15.5603 -12.3766 REMARK 3 T TENSOR REMARK 3 T11: 0.1109 T22: 0.1322 REMARK 3 T33: 0.1345 T12: 0.0072 REMARK 3 T13: -0.0020 T23: 0.0031 REMARK 3 L TENSOR REMARK 3 L11: 1.5810 L22: 1.9633 REMARK 3 L33: 4.4047 L12: -0.4252 REMARK 3 L13: 0.3534 L23: -0.4866 REMARK 3 S TENSOR REMARK 3 S11: 0.0223 S12: -0.0819 S13: -0.0917 REMARK 3 S21: -0.0125 S22: 0.0435 S23: 0.1105 REMARK 3 S31: 0.1752 S32: -0.1897 S33: -0.0459 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 66 THROUGH 83 ) REMARK 3 ORIGIN FOR THE GROUP (A): -23.5874 2.5500 -15.8516 REMARK 3 T TENSOR REMARK 3 T11: 0.1298 T22: 0.1300 REMARK 3 T33: 0.1465 T12: 0.0223 REMARK 3 T13: -0.0263 T23: -0.0078 REMARK 3 L TENSOR REMARK 3 L11: 3.0310 L22: 6.6735 REMARK 3 L33: 4.8294 L12: 2.9480 REMARK 3 L13: -3.7866 L23: -3.1493 REMARK 3 S TENSOR REMARK 3 S11: -0.1053 S12: 0.1591 S13: 0.2872 REMARK 3 S21: -0.1767 S22: 0.1903 S23: 0.2981 REMARK 3 S31: 0.1172 S32: -0.1116 S33: -0.0759 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 84 THROUGH 102 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.2862 -5.2158 -4.9256 REMARK 3 T TENSOR REMARK 3 T11: 0.1544 T22: 0.1246 REMARK 3 T33: 0.1148 T12: 0.0183 REMARK 3 T13: -0.0171 T23: -0.0327 REMARK 3 L TENSOR REMARK 3 L11: 3.9761 L22: 2.5396 REMARK 3 L33: 5.9075 L12: -0.2123 REMARK 3 L13: -0.7882 L23: -1.4922 REMARK 3 S TENSOR REMARK 3 S11: 0.0360 S12: -0.2512 S13: -0.0590 REMARK 3 S21: 0.2334 S22: -0.1773 S23: -0.0192 REMARK 3 S31: 0.0251 S32: 0.2222 S33: 0.1191 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 103 THROUGH 141 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.6864 -10.6230 -14.5746 REMARK 3 T TENSOR REMARK 3 T11: 0.1102 T22: 0.1070 REMARK 3 T33: 0.1450 T12: 0.0175 REMARK 3 T13: -0.0047 T23: -0.0053 REMARK 3 L TENSOR REMARK 3 L11: 2.1621 L22: 1.7251 REMARK 3 L33: 1.3750 L12: -0.4518 REMARK 3 L13: 0.2981 L23: -0.2157 REMARK 3 S TENSOR REMARK 3 S11: -0.0426 S12: 0.0090 S13: 0.0285 REMARK 3 S21: -0.0809 S22: 0.0072 S23: -0.1677 REMARK 3 S31: -0.0091 S32: 0.1091 S33: 0.0352 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 142 THROUGH 167 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.6798 -0.2538 -33.1633 REMARK 3 T TENSOR REMARK 3 T11: 0.2180 T22: 0.2594 REMARK 3 T33: 0.1458 T12: 0.0231 REMARK 3 T13: 0.0129 T23: 0.0286 REMARK 3 L TENSOR REMARK 3 L11: 2.1144 L22: 2.8225 REMARK 3 L33: 1.2820 L12: -0.0349 REMARK 3 L13: 0.5324 L23: 0.2771 REMARK 3 S TENSOR REMARK 3 S11: -0.0604 S12: 0.5460 S13: 0.1967 REMARK 3 S21: -0.3767 S22: -0.0849 S23: 0.0459 REMARK 3 S31: -0.0019 S32: 0.3570 S33: 0.0696 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 168 THROUGH 182 ) REMARK 3 ORIGIN FOR THE GROUP (A): -27.8469 -9.5128 -27.6583 REMARK 3 T TENSOR REMARK 3 T11: 0.1512 T22: 0.1576 REMARK 3 T33: 0.1547 T12: -0.0031 REMARK 3 T13: 0.0159 T23: -0.0037 REMARK 3 L TENSOR REMARK 3 L11: 1.9908 L22: 7.5983 REMARK 3 L33: 3.8933 L12: -2.4395 REMARK 3 L13: 0.2514 L23: 3.2458 REMARK 3 S TENSOR REMARK 3 S11: 0.1041 S12: 0.1534 S13: -0.0227 REMARK 3 S21: -0.2104 S22: -0.1260 S23: -0.0960 REMARK 3 S31: 0.0653 S32: -0.0378 S33: -0.0011 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 183 THROUGH 208 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.4015 -3.5786 -16.3239 REMARK 3 T TENSOR REMARK 3 T11: 0.1540 T22: 0.1668 REMARK 3 T33: 0.1457 T12: -0.0135 REMARK 3 T13: 0.0030 T23: -0.0231 REMARK 3 L TENSOR REMARK 3 L11: 2.8903 L22: 3.1665 REMARK 3 L33: 2.7581 L12: -2.2074 REMARK 3 L13: 1.7265 L23: -2.0461 REMARK 3 S TENSOR REMARK 3 S11: -0.1188 S12: -0.0971 S13: 0.2491 REMARK 3 S21: 0.1575 S22: 0.0094 S23: -0.3714 REMARK 3 S31: -0.1875 S32: 0.1929 S33: 0.1053 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 209 THROUGH 242 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.3558 -19.6314 -22.0102 REMARK 3 T TENSOR REMARK 3 T11: 0.1314 T22: 0.1327 REMARK 3 T33: 0.1549 T12: 0.0355 REMARK 3 T13: 0.0066 T23: 0.0016 REMARK 3 L TENSOR REMARK 3 L11: 2.6249 L22: 1.6057 REMARK 3 L33: 2.0895 L12: 0.9337 REMARK 3 L13: 0.4850 L23: 0.7702 REMARK 3 S TENSOR REMARK 3 S11: -0.0831 S12: 0.0702 S13: -0.0573 REMARK 3 S21: -0.0269 S22: 0.1289 S23: -0.1408 REMARK 3 S31: 0.1142 S32: 0.1714 S33: -0.0361 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 243 THROUGH 262 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.2696 -23.1914 -19.7897 REMARK 3 T TENSOR REMARK 3 T11: 0.1907 T22: 0.1265 REMARK 3 T33: 0.1585 T12: 0.0194 REMARK 3 T13: -0.0013 T23: -0.0276 REMARK 3 L TENSOR REMARK 3 L11: 2.1429 L22: 3.0651 REMARK 3 L33: 8.0705 L12: 0.4297 REMARK 3 L13: -1.5500 L23: -2.9686 REMARK 3 S TENSOR REMARK 3 S11: -0.2670 S12: 0.0190 S13: -0.1462 REMARK 3 S21: -0.2436 S22: -0.0309 S23: -0.2086 REMARK 3 S31: 0.5609 S32: -0.1441 S33: 0.2452 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6T6Z COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 21-OCT-19. REMARK 100 THE DEPOSITION ID IS D_1292104927. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-DEC-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.873130 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 X 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26141 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 44.520 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 5.300 REMARK 200 R MERGE (I) : 0.10400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.73 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.40 REMARK 200 R MERGE FOR SHELL (I) : 0.77800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6T6H REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 31.07 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.78 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MES, AMMONIUM SULFATE, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 33.35800 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 39.76500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 44.51600 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 33.35800 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 39.76500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 44.51600 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 33.35800 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 39.76500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 44.51600 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 33.35800 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 39.76500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 44.51600 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10310 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 403 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 496 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 498 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 503 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 559 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 595 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 602 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 639 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 SER A -10 REMARK 465 SER A -9 REMARK 465 GLY A -8 REMARK 465 LEU A -7 REMARK 465 VAL A -6 REMARK 465 PRO A -5 REMARK 465 ARG A -4 REMARK 465 GLY A -3 REMARK 465 SER A -2 REMARK 465 HIS A -1 REMARK 465 MET A 0 REMARK 465 VAL A 1 REMARK 465 ARG A 2 REMARK 465 ASP A 3 REMARK 465 GLY A 4 REMARK 465 ASN A 5 REMARK 465 GLY A 6 REMARK 465 THR A 7 REMARK 465 SER A 8 REMARK 465 ARG A 9 REMARK 465 GLU A 263 REMARK 465 GLY A 264 REMARK 465 GLY A 265 REMARK 465 HIS A 266 REMARK 465 GLY A 267 REMARK 465 THR A 268 REMARK 465 GLY A 269 REMARK 465 ASP A 270 REMARK 465 ALA A 271 REMARK 465 PRO A 272 REMARK 465 ALA A 273 REMARK 465 GLU A 274 REMARK 465 ALA A 275 REMARK 465 ARG A 276 REMARK 465 THR A 277 REMARK 465 THR A 278 REMARK 465 GLY A 279 REMARK 465 ASP A 280 REMARK 465 ALA A 281 REMARK 465 PRO A 282 REMARK 465 ALA A 283 REMARK 465 GLU A 284 REMARK 465 ALA A 285 REMARK 465 ARG A 286 REMARK 465 ALA A 287 REMARK 465 SER A 288 REMARK 465 GLY A 289 REMARK 465 THR A 290 REMARK 465 GLY A 291 REMARK 465 VAL A 292 REMARK 465 VAL A 293 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HH22 ARG A 46 O HOH A 408 1.51 REMARK 500 N ARG A 10 O HOH A 401 1.92 REMARK 500 O HOH A 532 O HOH A 613 1.92 REMARK 500 O HOH A 487 O HOH A 605 2.06 REMARK 500 O HOH A 434 O HOH A 447 2.10 REMARK 500 OE2 GLU A 252 O HOH A 402 2.11 REMARK 500 O HOH A 404 O HOH A 589 2.12 REMARK 500 O HOH A 597 O HOH A 601 2.14 REMARK 500 O HOH A 464 O HOH A 487 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 441 O HOH A 486 4555 1.76 REMARK 500 O HOH A 619 O HOH A 626 8544 1.86 REMARK 500 O HOH A 591 O HOH A 608 2455 1.89 REMARK 500 O HOH A 521 O HOH A 521 3455 1.96 REMARK 500 O HOH A 584 O HOH A 613 8544 2.03 REMARK 500 O HOH A 584 O HOH A 627 8544 2.11 REMARK 500 O HOH A 424 O HOH A 521 4555 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 42 40.63 -96.61 REMARK 500 LEU A 57 78.98 -117.00 REMARK 500 VAL A 76 -70.32 -124.78 REMARK 500 PHE A 109 -122.67 56.97 REMARK 500 HIS A 195 59.07 -118.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MRB A 301 DBREF 6T6Z A 2 293 UNP K4MHV9 K4MHV9_9ACTN 2 293 SEQADV 6T6Z HIS A -16 UNP K4MHV9 EXPRESSION TAG SEQADV 6T6Z HIS A -15 UNP K4MHV9 EXPRESSION TAG SEQADV 6T6Z HIS A -14 UNP K4MHV9 EXPRESSION TAG SEQADV 6T6Z HIS A -13 UNP K4MHV9 EXPRESSION TAG SEQADV 6T6Z HIS A -12 UNP K4MHV9 EXPRESSION TAG SEQADV 6T6Z HIS A -11 UNP K4MHV9 EXPRESSION TAG SEQADV 6T6Z SER A -10 UNP K4MHV9 EXPRESSION TAG SEQADV 6T6Z SER A -9 UNP K4MHV9 EXPRESSION TAG SEQADV 6T6Z GLY A -8 UNP K4MHV9 EXPRESSION TAG SEQADV 6T6Z LEU A -7 UNP K4MHV9 EXPRESSION TAG SEQADV 6T6Z VAL A -6 UNP K4MHV9 EXPRESSION TAG SEQADV 6T6Z PRO A -5 UNP K4MHV9 EXPRESSION TAG SEQADV 6T6Z ARG A -4 UNP K4MHV9 EXPRESSION TAG SEQADV 6T6Z GLY A -3 UNP K4MHV9 EXPRESSION TAG SEQADV 6T6Z SER A -2 UNP K4MHV9 EXPRESSION TAG SEQADV 6T6Z HIS A -1 UNP K4MHV9 EXPRESSION TAG SEQADV 6T6Z MET A 0 UNP K4MHV9 EXPRESSION TAG SEQADV 6T6Z VAL A 1 UNP K4MHV9 EXPRESSION TAG SEQRES 1 A 310 HIS HIS HIS HIS HIS HIS SER SER GLY LEU VAL PRO ARG SEQRES 2 A 310 GLY SER HIS MET VAL ARG ASP GLY ASN GLY THR SER ARG SEQRES 3 A 310 ARG ASP VAL PHE GLU VAL PHE SER ARG ASP GLY THR PRO SEQRES 4 A 310 ILE ARG GLY PHE SER ARG PRO GLY PRO GLY GLU THR VAL SEQRES 5 A 310 VAL LEU VAL HIS GLY VAL ALA MET ASP ARG ARG ILE TRP SEQRES 6 A 310 ALA GLU SER GLY PHE LEU ASP ALA LEU PRO ASP ALA HIS SEQRES 7 A 310 VAL LEU ALA LEU ASP LEU ARG GLY ARG GLY GLU SER GLY SEQRES 8 A 310 ARG VAL GLY THR ALA GLU GLY HIS ALA LEU ARG ARG TYR SEQRES 9 A 310 VAL GLU ASP VAL ARG ALA VAL LEU ASP ARG PHE GLY ARG SEQRES 10 A 310 ALA ARG TYR SER LEU PHE GLY THR PHE PHE GLY GLY ARG SEQRES 11 A 310 ILE ALA LEU GLN VAL ALA ALA VAL ASP THR ARG VAL ALA SEQRES 12 A 310 ARG ALA PHE SER PHE CYS ALA HIS ALA GLU GLN VAL GLU SEQRES 13 A 310 ILE PRO GLU ASP ALA VAL GLU GLU GLU ALA VAL ALA VAL SEQRES 14 A 310 GLU GLY PRO GLY GLY HIS ALA TYR LEU ARG ASP HIS PHE SEQRES 15 A 310 THR GLY ARG GLY ALA PRO PRO TRP MET VAL GLU ALA CYS SEQRES 16 A 310 ALA ARG VAL ASP PRO GLY GLU LEU GLY ALA ALA THR ARG SEQRES 17 A 310 GLY LEU LEU HIS GLY SER ASP ARG ARG THR GLU ARG GLY SEQRES 18 A 310 HIS PRO ASP GLN GLU LEU VAL LEU ILE THR ALA ASP GLY SEQRES 19 A 310 ASP ALA ASP LEU ALA PRO PHE HIS ALA GLY GLU ARG ARG SEQRES 20 A 310 LEU GLY ALA HIS LEU TRP LEU VAL ASP ALA PRO THR ARG SEQRES 21 A 310 ILE LYS ALA ALA GLY ARG LEU ALA GLU VAL GLY ARG ARG SEQRES 22 A 310 VAL ALA GLY VAL LEU ALA GLU GLY GLY HIS GLY THR GLY SEQRES 23 A 310 ASP ALA PRO ALA GLU ALA ARG THR THR GLY ASP ALA PRO SEQRES 24 A 310 ALA GLU ALA ARG ALA SER GLY THR GLY VAL VAL HET MRB A 301 121 HETNAM MRB BOTTROMYCIN A2 DERIVATIVE FORMUL 2 MRB C42 H62 N8 O7 S2 FORMUL 3 HOH *246(H2 O) HELIX 1 AA1 ARG A 46 SER A 51 1 6 HELIX 2 AA2 PHE A 53 LEU A 57 5 5 HELIX 3 AA3 ALA A 79 HIS A 82 5 4 HELIX 4 AA4 ALA A 83 GLY A 99 1 17 HELIX 5 AA5 PHE A 109 ASP A 122 1 14 HELIX 6 AA6 PRO A 141 GLY A 154 1 14 HELIX 7 AA7 GLY A 156 ARG A 168 1 13 HELIX 8 AA8 PRO A 171 CYS A 178 1 8 HELIX 9 AA9 ALA A 179 VAL A 181 5 3 HELIX 10 AB1 ASP A 182 LEU A 193 1 12 HELIX 11 AB2 LEU A 221 GLY A 232 1 12 HELIX 12 AB3 THR A 242 ALA A 247 1 6 HELIX 13 AB4 ARG A 249 ALA A 262 1 14 SHEET 1 AA1 8 ASP A 11 PHE A 16 0 SHEET 2 AA1 8 PRO A 22 ARG A 28 -1 O ILE A 23 N VAL A 15 SHEET 3 AA1 8 HIS A 61 LEU A 65 -1 O VAL A 62 N ARG A 28 SHEET 4 AA1 8 THR A 34 VAL A 38 1 N VAL A 35 O LEU A 63 SHEET 5 AA1 8 TYR A 103 THR A 108 1 O PHE A 106 N VAL A 38 SHEET 6 AA1 8 VAL A 125 PHE A 131 1 O PHE A 131 N GLY A 107 SHEET 7 AA1 8 GLU A 209 ALA A 215 1 O VAL A 211 N SER A 130 SHEET 8 AA1 8 HIS A 234 VAL A 238 1 O HIS A 234 N LEU A 212 SITE 1 AC1 15 PHE A 109 PHE A 110 ARG A 113 PRO A 141 SITE 2 AC1 15 GLU A 148 TYR A 160 LEU A 161 HIS A 164 SITE 3 AC1 15 PHE A 165 THR A 190 LEU A 193 SER A 197 SITE 4 AC1 15 HOH A 407 HOH A 531 HOH A 545 CRYST1 66.716 79.530 89.032 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014989 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012574 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011232 0.00000