HEADER NUCLEAR PROTEIN 21-OCT-19 6T79 TITLE STRUCTURE OF A HUMAN NUCLEOSOME AT 3.2 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: HISTONE H3.2; COMPND 3 CHAIN: A, E; COMPND 4 SYNONYM: HISTONE H3/M,HISTONE H3/O; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: HISTONE H4; COMPND 8 CHAIN: B, F; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: HISTONE H2A TYPE 1-B/E; COMPND 12 CHAIN: C, G; COMPND 13 SYNONYM: HISTONE H2A.2,HISTONE H2A/A,HISTONE H2A/M; COMPND 14 ENGINEERED: YES; COMPND 15 MOL_ID: 4; COMPND 16 MOLECULE: HISTONE H2B TYPE 1-K; COMPND 17 CHAIN: D, H; COMPND 18 SYNONYM: H2B K,HIRA-INTERACTING PROTEIN 1; COMPND 19 ENGINEERED: YES; COMPND 20 MOL_ID: 5; COMPND 21 MOLECULE: DNA (147-MER); COMPND 22 CHAIN: I; COMPND 23 ENGINEERED: YES; COMPND 24 MOL_ID: 6; COMPND 25 MOLECULE: DNA (147-MER); COMPND 26 CHAIN: J; COMPND 27 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HIST2H3A, HIST2H3C, H3F2, H3FM, HIST2H3D; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: CODONPLUS-RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET22B; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606; SOURCE 15 GENE: HIST1H4A, H4/A, H4FA, HIST1H4B, H4/I, H4FI, HIST1H4C, H4/G, SOURCE 16 H4FG, HIST1H4D, H4/B, H4FB, HIST1H4E, H4/J, H4FJ, HIST1H4F, H4/C, SOURCE 17 H4FC, HIST1H4H, H4/H, H4FH, HIST1H4I, H4/M, H4FM, HIST1H4J, H4/E, SOURCE 18 H4FE, HIST1H4K, H4/D, H4FD, HIST1H4L, H4/K, H4FK, HIST2H4A, H4/N, SOURCE 19 H4F2, H4FN, HIST2H4, HIST2H4B, H4/O, H4FO, HIST4H4; SOURCE 20 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 21 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 22 EXPRESSION_SYSTEM_VARIANT: CODONPLUS-RIL; SOURCE 23 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 24 EXPRESSION_SYSTEM_PLASMID: PET3A; SOURCE 25 MOL_ID: 3; SOURCE 26 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 27 ORGANISM_COMMON: HUMAN; SOURCE 28 ORGANISM_TAXID: 9606; SOURCE 29 GENE: HIST1H2AB, H2AFM, HIST1H2AE, H2AFA; SOURCE 30 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 31 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 32 EXPRESSION_SYSTEM_VARIANT: CODONPLUS-RIL; SOURCE 33 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 34 EXPRESSION_SYSTEM_PLASMID: LIC-1B (MACROLABS); SOURCE 35 MOL_ID: 4; SOURCE 36 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 37 ORGANISM_COMMON: HUMAN; SOURCE 38 ORGANISM_TAXID: 9606; SOURCE 39 GENE: HIST1H2BK, H2BFT, HIRIP1; SOURCE 40 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 41 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 42 EXPRESSION_SYSTEM_VARIANT: CODONPLUS-RIL; SOURCE 43 MOL_ID: 5; SOURCE 44 SYNTHETIC: YES; SOURCE 45 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 46 ORGANISM_TAXID: 32630; SOURCE 47 MOL_ID: 6; SOURCE 48 SYNTHETIC: YES; SOURCE 49 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 50 ORGANISM_TAXID: 32630 KEYWDS NUCLEOSOME, DNA, HISTONES, NUCLEAR PROTEIN EXPDTA ELECTRON MICROSCOPY AUTHOR S.O.DODONOVA,F.ZHU,C.DIENEMANN,J.TAIPALE,P.CRAMER REVDAT 2 13-MAY-20 6T79 1 JRNL REVDAT 1 29-APR-20 6T79 0 JRNL AUTH S.O.DODONOVA,F.ZHU,C.DIENEMANN,J.TAIPALE,P.CRAMER JRNL TITL NUCLEOSOME-BOUND SOX2 AND SOX11 STRUCTURES ELUCIDATE PIONEER JRNL TITL 2 FACTOR FUNCTION. JRNL REF NATURE V. 580 669 2020 JRNL REFN ESSN 1476-4687 JRNL PMID 32350470 JRNL DOI 10.1038/S41586-020-2195-Y REMARK 2 REMARK 2 RESOLUTION. 3.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : GAUTOMATCH, EPU, GCTF, RELION, RELION, REMARK 3 RELION, RELION, PHENIX REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : 6FQ5 REMARK 3 REFINEMENT SPACE : REAL REMARK 3 REFINEMENT PROTOCOL : OTHER REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : 75.000 REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.200 REMARK 3 NUMBER OF PARTICLES : 368270 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 6T79 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 21-OCT-19. REMARK 100 THE DEPOSITION ID IS D_1292104941. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : NUCLEOSOME; PROTEINS; DNA REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : 0.15 REMARK 245 SAMPLE SUPPORT DETAILS : 0.39 MB, 25 MA REMARK 245 SAMPLE VITRIFICATION DETAILS : THE SAMPLE WAS APPLIED ONTO REMARK 245 GLOW-DISCHARGED QUANTIFOIL REMARK 245 HOLEY CARBON GRIDS. THE GRIDS REMARK 245 WERE BLOTTED FROM BOTH SIDES REMARK 245 FOR 5-10 SECONDS AT 16*C IN A REMARK 245 CHAMBER AT 100% HUMIDITY AND REMARK 245 PLUNGE-FROZEN INTO LIQUID REMARK 245 ETHANE USING A MANUAL PLUNGER. REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.50 REMARK 245 SAMPLE DETAILS : NUCLEOSOME; PROTEINS; DNA REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : GATAN K2 SUMMIT (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 1000.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 3500.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : 2.70 REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 1.13 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : 130000 REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : AT LEAST 50% OF THE DATA REMARK 245 WERE COLLECTED AT 25* STAGE TILT IN ORDER TO PARTIALLY REMARK 245 COMPENSATE FOR PREFERRED ORIENTATION OF PARTICLES ON THE GRID, REMARK 245 AND TO IMPROVE ANGULAR DISTRIBUTION. REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DECAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DECAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 58380 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 74490 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -382.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F, G, H, I, J REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 ALA A 1 REMARK 465 ARG A 2 REMARK 465 THR A 3 REMARK 465 LYS A 4 REMARK 465 GLN A 5 REMARK 465 THR A 6 REMARK 465 ALA A 7 REMARK 465 ARG A 8 REMARK 465 LYS A 9 REMARK 465 SER A 10 REMARK 465 THR A 11 REMARK 465 GLY A 12 REMARK 465 GLY A 13 REMARK 465 LYS A 14 REMARK 465 ALA A 15 REMARK 465 PRO A 16 REMARK 465 ARG A 17 REMARK 465 LYS A 18 REMARK 465 GLN A 19 REMARK 465 LEU A 20 REMARK 465 ALA A 21 REMARK 465 THR A 22 REMARK 465 LYS A 23 REMARK 465 ALA A 24 REMARK 465 ALA A 25 REMARK 465 ARG A 26 REMARK 465 LYS A 27 REMARK 465 SER A 28 REMARK 465 ALA A 29 REMARK 465 PRO A 30 REMARK 465 ALA A 31 REMARK 465 THR A 32 REMARK 465 GLY A 33 REMARK 465 GLY A 34 REMARK 465 VAL A 35 REMARK 465 LYS A 36 REMARK 465 ALA A 135 REMARK 465 MET B 0 REMARK 465 SER B 1 REMARK 465 GLY B 2 REMARK 465 ARG B 3 REMARK 465 GLY B 4 REMARK 465 LYS B 5 REMARK 465 GLY B 6 REMARK 465 GLY B 7 REMARK 465 LYS B 8 REMARK 465 GLY B 9 REMARK 465 LEU B 10 REMARK 465 GLY B 11 REMARK 465 LYS B 12 REMARK 465 GLY B 13 REMARK 465 GLY B 14 REMARK 465 ALA B 15 REMARK 465 LYS B 16 REMARK 465 ARG B 17 REMARK 465 GLY B 102 REMARK 465 MET C -21 REMARK 465 GLY C -20 REMARK 465 SER C -19 REMARK 465 SER C -18 REMARK 465 HIS C -17 REMARK 465 HIS C -16 REMARK 465 HIS C -15 REMARK 465 HIS C -14 REMARK 465 HIS C -13 REMARK 465 HIS C -12 REMARK 465 GLU C -11 REMARK 465 ASN C -10 REMARK 465 LEU C -9 REMARK 465 TYR C -8 REMARK 465 PHE C -7 REMARK 465 GLN C -6 REMARK 465 SER C -5 REMARK 465 ASN C -4 REMARK 465 ALA C -3 REMARK 465 PRO C -2 REMARK 465 TRP C -1 REMARK 465 MET C 0 REMARK 465 SER C 1 REMARK 465 GLY C 2 REMARK 465 ARG C 3 REMARK 465 GLY C 4 REMARK 465 LYS C 5 REMARK 465 GLN C 6 REMARK 465 GLY C 7 REMARK 465 GLY C 8 REMARK 465 LYS C 119 REMARK 465 THR C 120 REMARK 465 GLU C 121 REMARK 465 SER C 122 REMARK 465 HIS C 123 REMARK 465 HIS C 124 REMARK 465 LYS C 125 REMARK 465 ALA C 126 REMARK 465 LYS C 127 REMARK 465 GLY C 128 REMARK 465 LYS C 129 REMARK 465 MET D -3 REMARK 465 PRO D -2 REMARK 465 GLU D -1 REMARK 465 PRO D 0 REMARK 465 ALA D 1 REMARK 465 LYS D 2 REMARK 465 SER D 3 REMARK 465 ALA D 4 REMARK 465 PRO D 5 REMARK 465 ALA D 6 REMARK 465 PRO D 7 REMARK 465 LYS D 8 REMARK 465 LYS D 9 REMARK 465 GLY D 10 REMARK 465 SER D 11 REMARK 465 LYS D 12 REMARK 465 LYS D 13 REMARK 465 ALA D 14 REMARK 465 VAL D 15 REMARK 465 THR D 16 REMARK 465 LYS D 17 REMARK 465 ALA D 18 REMARK 465 GLN D 19 REMARK 465 LYS D 20 REMARK 465 LYS D 21 REMARK 465 ASP D 22 REMARK 465 GLY D 23 REMARK 465 LYS D 24 REMARK 465 LYS D 25 REMARK 465 ARG D 26 REMARK 465 LYS D 122 REMARK 465 MET E 0 REMARK 465 ALA E 1 REMARK 465 ARG E 2 REMARK 465 THR E 3 REMARK 465 LYS E 4 REMARK 465 GLN E 5 REMARK 465 THR E 6 REMARK 465 ALA E 7 REMARK 465 ARG E 8 REMARK 465 LYS E 9 REMARK 465 SER E 10 REMARK 465 THR E 11 REMARK 465 GLY E 12 REMARK 465 GLY E 13 REMARK 465 LYS E 14 REMARK 465 ALA E 15 REMARK 465 PRO E 16 REMARK 465 ARG E 17 REMARK 465 LYS E 18 REMARK 465 GLN E 19 REMARK 465 LEU E 20 REMARK 465 ALA E 21 REMARK 465 THR E 22 REMARK 465 LYS E 23 REMARK 465 ALA E 24 REMARK 465 ALA E 25 REMARK 465 ARG E 26 REMARK 465 LYS E 27 REMARK 465 SER E 28 REMARK 465 ALA E 29 REMARK 465 PRO E 30 REMARK 465 ALA E 31 REMARK 465 THR E 32 REMARK 465 GLY E 33 REMARK 465 GLY E 34 REMARK 465 VAL E 35 REMARK 465 LYS E 36 REMARK 465 LYS E 37 REMARK 465 ALA E 135 REMARK 465 MET F 0 REMARK 465 SER F 1 REMARK 465 GLY F 2 REMARK 465 ARG F 3 REMARK 465 GLY F 4 REMARK 465 LYS F 5 REMARK 465 GLY F 6 REMARK 465 GLY F 7 REMARK 465 LYS F 8 REMARK 465 GLY F 9 REMARK 465 LEU F 10 REMARK 465 GLY F 11 REMARK 465 LYS F 12 REMARK 465 GLY F 13 REMARK 465 GLY F 14 REMARK 465 ALA F 15 REMARK 465 MET G -21 REMARK 465 GLY G -20 REMARK 465 SER G -19 REMARK 465 SER G -18 REMARK 465 HIS G -17 REMARK 465 HIS G -16 REMARK 465 HIS G -15 REMARK 465 HIS G -14 REMARK 465 HIS G -13 REMARK 465 HIS G -12 REMARK 465 GLU G -11 REMARK 465 ASN G -10 REMARK 465 LEU G -9 REMARK 465 TYR G -8 REMARK 465 PHE G -7 REMARK 465 GLN G -6 REMARK 465 SER G -5 REMARK 465 ASN G -4 REMARK 465 ALA G -3 REMARK 465 PRO G -2 REMARK 465 TRP G -1 REMARK 465 MET G 0 REMARK 465 SER G 1 REMARK 465 GLY G 2 REMARK 465 ARG G 3 REMARK 465 GLY G 4 REMARK 465 LYS G 5 REMARK 465 GLN G 6 REMARK 465 GLY G 7 REMARK 465 GLY G 8 REMARK 465 LYS G 119 REMARK 465 THR G 120 REMARK 465 GLU G 121 REMARK 465 SER G 122 REMARK 465 HIS G 123 REMARK 465 HIS G 124 REMARK 465 LYS G 125 REMARK 465 ALA G 126 REMARK 465 LYS G 127 REMARK 465 GLY G 128 REMARK 465 LYS G 129 REMARK 465 MET H -3 REMARK 465 PRO H -2 REMARK 465 GLU H -1 REMARK 465 PRO H 0 REMARK 465 ALA H 1 REMARK 465 LYS H 2 REMARK 465 SER H 3 REMARK 465 ALA H 4 REMARK 465 PRO H 5 REMARK 465 ALA H 6 REMARK 465 PRO H 7 REMARK 465 LYS H 8 REMARK 465 LYS H 9 REMARK 465 GLY H 10 REMARK 465 SER H 11 REMARK 465 LYS H 12 REMARK 465 LYS H 13 REMARK 465 ALA H 14 REMARK 465 VAL H 15 REMARK 465 THR H 16 REMARK 465 LYS H 17 REMARK 465 ALA H 18 REMARK 465 GLN H 19 REMARK 465 LYS H 20 REMARK 465 LYS H 21 REMARK 465 ASP H 22 REMARK 465 GLY H 23 REMARK 465 LYS H 24 REMARK 465 LYS H 25 REMARK 465 ARG H 26 REMARK 465 LYS H 122 REMARK 465 DA I 146 REMARK 465 DT I 147 REMARK 465 DA J -1 REMARK 465 DT J 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU C 61 CD2 LEU D 103 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DT I 54 O4' - C1' - N1 ANGL. DEV. = 2.5 DEGREES REMARK 500 DA I 56 O4' - C1' - N9 ANGL. DEV. = 1.8 DEGREES REMARK 500 DT I 65 O4' - C1' - N1 ANGL. DEV. = 2.3 DEGREES REMARK 500 DT I 88 O4' - C1' - N1 ANGL. DEV. = 1.9 DEGREES REMARK 500 DC I 97 O4' - C1' - N1 ANGL. DEV. = 2.4 DEGREES REMARK 500 DC I 101 O4' - C1' - N1 ANGL. DEV. = 2.5 DEGREES REMARK 500 DC I 140 O4' - C1' - N1 ANGL. DEV. = 2.1 DEGREES REMARK 500 DT J 38 O4' - C1' - N1 ANGL. DEV. = 2.0 DEGREES REMARK 500 DC J 60 O4' - C1' - N1 ANGL. DEV. = 1.9 DEGREES REMARK 500 DG J 79 O4' - C1' - N9 ANGL. DEV. = 2.2 DEGREES REMARK 500 DT J 90 O4' - C1' - N1 ANGL. DEV. = 1.9 DEGREES REMARK 500 DC J 110 O4' - C1' - N1 ANGL. DEV. = 2.4 DEGREES REMARK 500 DG J 127 O4' - C1' - N9 ANGL. DEV. = 2.5 DEGREES REMARK 500 DA J 142 O4' - C1' - N9 ANGL. DEV. = 2.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-10390 RELATED DB: EMDB REMARK 900 STRUCTURE OF A HUMAN NUCLEOSOME AT 3.2 A RESOLUTION REMARK 900 RELATED ID: 6T7A RELATED DB: PDB REMARK 900 RELATED ID: 6T7B RELATED DB: PDB REMARK 900 RELATED ID: 6T7C RELATED DB: PDB REMARK 900 RELATED ID: 6T7D RELATED DB: PDB REMARK 900 RELATED ID: 6T78 RELATED DB: PDB DBREF 6T79 A 0 135 UNP Q71DI3 H32_HUMAN 1 136 DBREF 6T79 B 0 102 UNP P62805 H4_HUMAN 1 103 DBREF 6T79 C 0 129 UNP P04908 H2A1B_HUMAN 1 130 DBREF 6T79 D -3 122 UNP O60814 H2B1K_HUMAN 1 126 DBREF 6T79 E 0 135 UNP Q71DI3 H32_HUMAN 1 136 DBREF 6T79 F 0 102 UNP P62805 H4_HUMAN 1 103 DBREF 6T79 G 0 129 UNP P04908 H2A1B_HUMAN 1 130 DBREF 6T79 H -3 122 UNP O60814 H2B1K_HUMAN 1 126 DBREF 6T79 I 1 147 PDB 6T79 6T79 1 147 DBREF 6T79 J -1 145 PDB 6T79 6T79 -1 145 SEQADV 6T79 ALA A 110 UNP Q71DI3 CYS 111 ENGINEERED MUTATION SEQADV 6T79 MET C -21 UNP P04908 INITIATING METHIONINE SEQADV 6T79 GLY C -20 UNP P04908 EXPRESSION TAG SEQADV 6T79 SER C -19 UNP P04908 EXPRESSION TAG SEQADV 6T79 SER C -18 UNP P04908 EXPRESSION TAG SEQADV 6T79 HIS C -17 UNP P04908 EXPRESSION TAG SEQADV 6T79 HIS C -16 UNP P04908 EXPRESSION TAG SEQADV 6T79 HIS C -15 UNP P04908 EXPRESSION TAG SEQADV 6T79 HIS C -14 UNP P04908 EXPRESSION TAG SEQADV 6T79 HIS C -13 UNP P04908 EXPRESSION TAG SEQADV 6T79 HIS C -12 UNP P04908 EXPRESSION TAG SEQADV 6T79 GLU C -11 UNP P04908 EXPRESSION TAG SEQADV 6T79 ASN C -10 UNP P04908 EXPRESSION TAG SEQADV 6T79 LEU C -9 UNP P04908 EXPRESSION TAG SEQADV 6T79 TYR C -8 UNP P04908 EXPRESSION TAG SEQADV 6T79 PHE C -7 UNP P04908 EXPRESSION TAG SEQADV 6T79 GLN C -6 UNP P04908 EXPRESSION TAG SEQADV 6T79 SER C -5 UNP P04908 EXPRESSION TAG SEQADV 6T79 ASN C -4 UNP P04908 EXPRESSION TAG SEQADV 6T79 ALA C -3 UNP P04908 EXPRESSION TAG SEQADV 6T79 PRO C -2 UNP P04908 EXPRESSION TAG SEQADV 6T79 TRP C -1 UNP P04908 EXPRESSION TAG SEQADV 6T79 ALA E 110 UNP Q71DI3 CYS 111 ENGINEERED MUTATION SEQADV 6T79 MET G -21 UNP P04908 INITIATING METHIONINE SEQADV 6T79 GLY G -20 UNP P04908 EXPRESSION TAG SEQADV 6T79 SER G -19 UNP P04908 EXPRESSION TAG SEQADV 6T79 SER G -18 UNP P04908 EXPRESSION TAG SEQADV 6T79 HIS G -17 UNP P04908 EXPRESSION TAG SEQADV 6T79 HIS G -16 UNP P04908 EXPRESSION TAG SEQADV 6T79 HIS G -15 UNP P04908 EXPRESSION TAG SEQADV 6T79 HIS G -14 UNP P04908 EXPRESSION TAG SEQADV 6T79 HIS G -13 UNP P04908 EXPRESSION TAG SEQADV 6T79 HIS G -12 UNP P04908 EXPRESSION TAG SEQADV 6T79 GLU G -11 UNP P04908 EXPRESSION TAG SEQADV 6T79 ASN G -10 UNP P04908 EXPRESSION TAG SEQADV 6T79 LEU G -9 UNP P04908 EXPRESSION TAG SEQADV 6T79 TYR G -8 UNP P04908 EXPRESSION TAG SEQADV 6T79 PHE G -7 UNP P04908 EXPRESSION TAG SEQADV 6T79 GLN G -6 UNP P04908 EXPRESSION TAG SEQADV 6T79 SER G -5 UNP P04908 EXPRESSION TAG SEQADV 6T79 ASN G -4 UNP P04908 EXPRESSION TAG SEQADV 6T79 ALA G -3 UNP P04908 EXPRESSION TAG SEQADV 6T79 PRO G -2 UNP P04908 EXPRESSION TAG SEQADV 6T79 TRP G -1 UNP P04908 EXPRESSION TAG SEQRES 1 A 136 MET ALA ARG THR LYS GLN THR ALA ARG LYS SER THR GLY SEQRES 2 A 136 GLY LYS ALA PRO ARG LYS GLN LEU ALA THR LYS ALA ALA SEQRES 3 A 136 ARG LYS SER ALA PRO ALA THR GLY GLY VAL LYS LYS PRO SEQRES 4 A 136 HIS ARG TYR ARG PRO GLY THR VAL ALA LEU ARG GLU ILE SEQRES 5 A 136 ARG ARG TYR GLN LYS SER THR GLU LEU LEU ILE ARG LYS SEQRES 6 A 136 LEU PRO PHE GLN ARG LEU VAL ARG GLU ILE ALA GLN ASP SEQRES 7 A 136 PHE LYS THR ASP LEU ARG PHE GLN SER SER ALA VAL MET SEQRES 8 A 136 ALA LEU GLN GLU ALA SER GLU ALA TYR LEU VAL GLY LEU SEQRES 9 A 136 PHE GLU ASP THR ASN LEU ALA ALA ILE HIS ALA LYS ARG SEQRES 10 A 136 VAL THR ILE MET PRO LYS ASP ILE GLN LEU ALA ARG ARG SEQRES 11 A 136 ILE ARG GLY GLU ARG ALA SEQRES 1 B 103 MET SER GLY ARG GLY LYS GLY GLY LYS GLY LEU GLY LYS SEQRES 2 B 103 GLY GLY ALA LYS ARG HIS ARG LYS VAL LEU ARG ASP ASN SEQRES 3 B 103 ILE GLN GLY ILE THR LYS PRO ALA ILE ARG ARG LEU ALA SEQRES 4 B 103 ARG ARG GLY GLY VAL LYS ARG ILE SER GLY LEU ILE TYR SEQRES 5 B 103 GLU GLU THR ARG GLY VAL LEU LYS VAL PHE LEU GLU ASN SEQRES 6 B 103 VAL ILE ARG ASP ALA VAL THR TYR THR GLU HIS ALA LYS SEQRES 7 B 103 ARG LYS THR VAL THR ALA MET ASP VAL VAL TYR ALA LEU SEQRES 8 B 103 LYS ARG GLN GLY ARG THR LEU TYR GLY PHE GLY GLY SEQRES 1 C 151 MET GLY SER SER HIS HIS HIS HIS HIS HIS GLU ASN LEU SEQRES 2 C 151 TYR PHE GLN SER ASN ALA PRO TRP MET SER GLY ARG GLY SEQRES 3 C 151 LYS GLN GLY GLY LYS ALA ARG ALA LYS ALA LYS THR ARG SEQRES 4 C 151 SER SER ARG ALA GLY LEU GLN PHE PRO VAL GLY ARG VAL SEQRES 5 C 151 HIS ARG LEU LEU ARG LYS GLY ASN TYR SER GLU ARG VAL SEQRES 6 C 151 GLY ALA GLY ALA PRO VAL TYR LEU ALA ALA VAL LEU GLU SEQRES 7 C 151 TYR LEU THR ALA GLU ILE LEU GLU LEU ALA GLY ASN ALA SEQRES 8 C 151 ALA ARG ASP ASN LYS LYS THR ARG ILE ILE PRO ARG HIS SEQRES 9 C 151 LEU GLN LEU ALA ILE ARG ASN ASP GLU GLU LEU ASN LYS SEQRES 10 C 151 LEU LEU GLY ARG VAL THR ILE ALA GLN GLY GLY VAL LEU SEQRES 11 C 151 PRO ASN ILE GLN ALA VAL LEU LEU PRO LYS LYS THR GLU SEQRES 12 C 151 SER HIS HIS LYS ALA LYS GLY LYS SEQRES 1 D 126 MET PRO GLU PRO ALA LYS SER ALA PRO ALA PRO LYS LYS SEQRES 2 D 126 GLY SER LYS LYS ALA VAL THR LYS ALA GLN LYS LYS ASP SEQRES 3 D 126 GLY LYS LYS ARG LYS ARG SER ARG LYS GLU SER TYR SER SEQRES 4 D 126 VAL TYR VAL TYR LYS VAL LEU LYS GLN VAL HIS PRO ASP SEQRES 5 D 126 THR GLY ILE SER SER LYS ALA MET GLY ILE MET ASN SER SEQRES 6 D 126 PHE VAL ASN ASP ILE PHE GLU ARG ILE ALA GLY GLU ALA SEQRES 7 D 126 SER ARG LEU ALA HIS TYR ASN LYS ARG SER THR ILE THR SEQRES 8 D 126 SER ARG GLU ILE GLN THR ALA VAL ARG LEU LEU LEU PRO SEQRES 9 D 126 GLY GLU LEU ALA LYS HIS ALA VAL SER GLU GLY THR LYS SEQRES 10 D 126 ALA VAL THR LYS TYR THR SER ALA LYS SEQRES 1 E 136 MET ALA ARG THR LYS GLN THR ALA ARG LYS SER THR GLY SEQRES 2 E 136 GLY LYS ALA PRO ARG LYS GLN LEU ALA THR LYS ALA ALA SEQRES 3 E 136 ARG LYS SER ALA PRO ALA THR GLY GLY VAL LYS LYS PRO SEQRES 4 E 136 HIS ARG TYR ARG PRO GLY THR VAL ALA LEU ARG GLU ILE SEQRES 5 E 136 ARG ARG TYR GLN LYS SER THR GLU LEU LEU ILE ARG LYS SEQRES 6 E 136 LEU PRO PHE GLN ARG LEU VAL ARG GLU ILE ALA GLN ASP SEQRES 7 E 136 PHE LYS THR ASP LEU ARG PHE GLN SER SER ALA VAL MET SEQRES 8 E 136 ALA LEU GLN GLU ALA SER GLU ALA TYR LEU VAL GLY LEU SEQRES 9 E 136 PHE GLU ASP THR ASN LEU ALA ALA ILE HIS ALA LYS ARG SEQRES 10 E 136 VAL THR ILE MET PRO LYS ASP ILE GLN LEU ALA ARG ARG SEQRES 11 E 136 ILE ARG GLY GLU ARG ALA SEQRES 1 F 103 MET SER GLY ARG GLY LYS GLY GLY LYS GLY LEU GLY LYS SEQRES 2 F 103 GLY GLY ALA LYS ARG HIS ARG LYS VAL LEU ARG ASP ASN SEQRES 3 F 103 ILE GLN GLY ILE THR LYS PRO ALA ILE ARG ARG LEU ALA SEQRES 4 F 103 ARG ARG GLY GLY VAL LYS ARG ILE SER GLY LEU ILE TYR SEQRES 5 F 103 GLU GLU THR ARG GLY VAL LEU LYS VAL PHE LEU GLU ASN SEQRES 6 F 103 VAL ILE ARG ASP ALA VAL THR TYR THR GLU HIS ALA LYS SEQRES 7 F 103 ARG LYS THR VAL THR ALA MET ASP VAL VAL TYR ALA LEU SEQRES 8 F 103 LYS ARG GLN GLY ARG THR LEU TYR GLY PHE GLY GLY SEQRES 1 G 151 MET GLY SER SER HIS HIS HIS HIS HIS HIS GLU ASN LEU SEQRES 2 G 151 TYR PHE GLN SER ASN ALA PRO TRP MET SER GLY ARG GLY SEQRES 3 G 151 LYS GLN GLY GLY LYS ALA ARG ALA LYS ALA LYS THR ARG SEQRES 4 G 151 SER SER ARG ALA GLY LEU GLN PHE PRO VAL GLY ARG VAL SEQRES 5 G 151 HIS ARG LEU LEU ARG LYS GLY ASN TYR SER GLU ARG VAL SEQRES 6 G 151 GLY ALA GLY ALA PRO VAL TYR LEU ALA ALA VAL LEU GLU SEQRES 7 G 151 TYR LEU THR ALA GLU ILE LEU GLU LEU ALA GLY ASN ALA SEQRES 8 G 151 ALA ARG ASP ASN LYS LYS THR ARG ILE ILE PRO ARG HIS SEQRES 9 G 151 LEU GLN LEU ALA ILE ARG ASN ASP GLU GLU LEU ASN LYS SEQRES 10 G 151 LEU LEU GLY ARG VAL THR ILE ALA GLN GLY GLY VAL LEU SEQRES 11 G 151 PRO ASN ILE GLN ALA VAL LEU LEU PRO LYS LYS THR GLU SEQRES 12 G 151 SER HIS HIS LYS ALA LYS GLY LYS SEQRES 1 H 126 MET PRO GLU PRO ALA LYS SER ALA PRO ALA PRO LYS LYS SEQRES 2 H 126 GLY SER LYS LYS ALA VAL THR LYS ALA GLN LYS LYS ASP SEQRES 3 H 126 GLY LYS LYS ARG LYS ARG SER ARG LYS GLU SER TYR SER SEQRES 4 H 126 VAL TYR VAL TYR LYS VAL LEU LYS GLN VAL HIS PRO ASP SEQRES 5 H 126 THR GLY ILE SER SER LYS ALA MET GLY ILE MET ASN SER SEQRES 6 H 126 PHE VAL ASN ASP ILE PHE GLU ARG ILE ALA GLY GLU ALA SEQRES 7 H 126 SER ARG LEU ALA HIS TYR ASN LYS ARG SER THR ILE THR SEQRES 8 H 126 SER ARG GLU ILE GLN THR ALA VAL ARG LEU LEU LEU PRO SEQRES 9 H 126 GLY GLU LEU ALA LYS HIS ALA VAL SER GLU GLY THR LYS SEQRES 10 H 126 ALA VAL THR LYS TYR THR SER ALA LYS SEQRES 1 I 147 DA DT DC DT DA DC DA DC DG DA DC DG DC SEQRES 2 I 147 DT DC DT DT DC DC DG DA DT DC DT DA DA SEQRES 3 I 147 DT DT DT DA DT DG DT DT DT DG DT DT DA SEQRES 4 I 147 DG DC DG DT DT DA DT DA DC DT DA DT DT SEQRES 5 I 147 DC DT DA DA DT DT DC DT DT DT DG DT DT SEQRES 6 I 147 DT DC DG DG DT DG DG DT DA DT DT DG DT SEQRES 7 I 147 DT DT DA DT DT DT DT DG DT DT DC DC DT SEQRES 8 I 147 DT DT DG DT DG DC DG DT DT DC DA DG DC SEQRES 9 I 147 DT DT DA DA DT DG DC DC DT DA DA DC DG SEQRES 10 I 147 DA DC DA DC DT DC DG DG DA DG DA DT DC SEQRES 11 I 147 DG DG DA DA DG DA DG DC DA DC DA DC DG SEQRES 12 I 147 DT DG DA DT SEQRES 1 J 147 DA DT DC DA DC DG DT DG DT DG DC DT DC SEQRES 2 J 147 DT DT DC DC DG DA DT DC DT DC DC DG DA SEQRES 3 J 147 DG DT DG DT DC DG DT DT DA DG DG DC DA SEQRES 4 J 147 DT DT DA DA DG DC DT DG DA DA DC DG DC SEQRES 5 J 147 DA DC DA DA DA DG DG DA DA DC DA DA DA SEQRES 6 J 147 DA DT DA DA DA DC DA DA DT DA DC DC DA SEQRES 7 J 147 DC DC DG DA DA DA DC DA DA DA DG DA DA SEQRES 8 J 147 DT DT DA DG DA DA DT DA DG DT DA DT DA SEQRES 9 J 147 DA DC DG DC DT DA DA DC DA DA DA DC DA SEQRES 10 J 147 DT DA DA DA DT DT DA DG DA DT DC DG DG SEQRES 11 J 147 DA DA DG DA DG DC DG DT DC DG DT DG DT SEQRES 12 J 147 DA DG DA DT HELIX 1 AA1 GLY A 44 SER A 57 1 14 HELIX 2 AA2 ARG A 63 GLN A 76 1 14 HELIX 3 AA3 GLN A 85 HIS A 113 1 29 HELIX 4 AA4 MET A 120 ARG A 131 1 12 HELIX 5 AA5 ASN B 25 ILE B 29 5 5 HELIX 6 AA6 THR B 30 GLY B 41 1 12 HELIX 7 AA7 LEU B 49 ALA B 76 1 28 HELIX 8 AA8 THR B 82 GLN B 93 1 12 HELIX 9 AA9 THR C 16 ALA C 21 1 6 HELIX 10 AB1 PRO C 26 LYS C 36 1 11 HELIX 11 AB2 ALA C 45 ASN C 73 1 29 HELIX 12 AB3 ILE C 79 ASP C 90 1 12 HELIX 13 AB4 GLU C 92 LEU C 97 1 6 HELIX 14 AB5 TYR D 34 HIS D 46 1 13 HELIX 15 AB6 SER D 53 ASN D 81 1 29 HELIX 16 AB7 THR D 87 LEU D 99 1 13 HELIX 17 AB8 GLY D 101 ALA D 121 1 21 HELIX 18 AB9 GLY E 44 SER E 57 1 14 HELIX 19 AC1 ARG E 63 ALA E 75 1 13 HELIX 20 AC2 GLN E 76 PHE E 78 5 3 HELIX 21 AC3 GLN E 85 ALA E 114 1 30 HELIX 22 AC4 MET E 120 ARG E 131 1 12 HELIX 23 AC5 ASN F 25 ILE F 29 5 5 HELIX 24 AC6 THR F 30 GLY F 41 1 12 HELIX 25 AC7 LEU F 49 ALA F 76 1 28 HELIX 26 AC8 THR F 82 GLN F 93 1 12 HELIX 27 AC9 THR G 16 ALA G 21 1 6 HELIX 28 AD1 PRO G 26 LYS G 36 1 11 HELIX 29 AD2 ALA G 45 ASN G 73 1 29 HELIX 30 AD3 ILE G 79 ASP G 90 1 12 HELIX 31 AD4 GLU G 92 LEU G 97 1 6 HELIX 32 AD5 TYR H 34 HIS H 46 1 13 HELIX 33 AD6 SER H 53 ASN H 81 1 29 HELIX 34 AD7 THR H 87 LEU H 99 1 13 HELIX 35 AD8 GLY H 101 ALA H 121 1 21 SHEET 1 AA1 2 ARG A 83 PHE A 84 0 SHEET 2 AA1 2 THR B 80 VAL B 81 1 O VAL B 81 N ARG A 83 SHEET 1 AA2 2 THR A 118 ILE A 119 0 SHEET 2 AA2 2 ARG B 45 ILE B 46 1 O ARG B 45 N ILE A 119 SHEET 1 AA3 2 THR B 96 TYR B 98 0 SHEET 2 AA3 2 VAL G 100 ILE G 102 1 O THR G 101 N THR B 96 SHEET 1 AA4 2 ARG C 42 VAL C 43 0 SHEET 2 AA4 2 THR D 85 ILE D 86 1 O ILE D 86 N ARG C 42 SHEET 1 AA5 2 ARG C 77 ILE C 78 0 SHEET 2 AA5 2 GLY D 50 ILE D 51 1 O GLY D 50 N ILE C 78 SHEET 1 AA6 2 VAL C 100 ILE C 102 0 SHEET 2 AA6 2 THR F 96 TYR F 98 1 O THR F 96 N THR C 101 SHEET 1 AA7 2 ARG E 83 PHE E 84 0 SHEET 2 AA7 2 THR F 80 VAL F 81 1 O VAL F 81 N ARG E 83 SHEET 1 AA8 2 THR E 118 ILE E 119 0 SHEET 2 AA8 2 ARG F 45 ILE F 46 1 O ARG F 45 N ILE E 119 SHEET 1 AA9 2 ARG G 42 VAL G 43 0 SHEET 2 AA9 2 THR H 85 ILE H 86 1 O ILE H 86 N ARG G 42 SHEET 1 AB1 2 ARG G 77 ILE G 78 0 SHEET 2 AB1 2 GLY H 50 ILE H 51 1 O GLY H 50 N ILE G 78 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000