HEADER HYDROLASE 22-OCT-19 6T7L TITLE CRYSTAL STRUCTURE OF AMPC FROM E.COLI WITH NACUBACTAM (OP0595) COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-LACTAMASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CEPHALOSPORINASE; COMPND 5 EC: 3.5.2.6; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI K-12; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 GENE: AMPC, AMPA, B4150, JW4111; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI STR. K-12 SUBSTR. W3110; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 316407 KEYWDS BETA LACTAMASE, ANTIBIOTIC RESISTANCE, DIAZABICYCLOOCTANE, DBO, KEYWDS 2 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR P.A.LANG,T.M.LEISSING,C.J.SCHOFIELD,J.BREM REVDAT 4 24-JAN-24 6T7L 1 REMARK REVDAT 3 03-FEB-21 6T7L 1 JRNL REVDAT 2 02-DEC-20 6T7L 1 JRNL REVDAT 1 18-NOV-20 6T7L 0 JRNL AUTH P.A.LANG,T.M.LEISSING,M.G.P.PAGE,C.J.SCHOFIELD,J.BREM JRNL TITL STRUCTURAL INVESTIGATIONS OF THE INHIBITION OF ESCHERICHIA JRNL TITL 2 COLI AMPC BETA-LACTAMASE BY DIAZABICYCLOOCTANES. JRNL REF ANTIMICROB.AGENTS CHEMOTHER. V. 65 2021 JRNL REFN ESSN 1098-6596 JRNL PMID 33199391 JRNL DOI 10.1128/AAC.02073-20 REMARK 2 REMARK 2 RESOLUTION. 1.47 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.15.2_3472 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.47 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.85 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 76386 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.156 REMARK 3 R VALUE (WORKING SET) : 0.155 REMARK 3 FREE R VALUE : 0.182 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.870 REMARK 3 FREE R VALUE TEST SET COUNT : 3720 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.8530 - 4.4091 1.00 2992 155 0.1778 0.1856 REMARK 3 2 4.4091 - 3.5000 1.00 2818 127 0.1409 0.1547 REMARK 3 3 3.5000 - 3.0576 1.00 2768 127 0.1601 0.1780 REMARK 3 4 3.0576 - 2.7781 0.99 2708 154 0.1553 0.1683 REMARK 3 5 2.7781 - 2.5790 0.99 2729 139 0.1545 0.1598 REMARK 3 6 2.5790 - 2.4269 0.99 2689 146 0.1528 0.2004 REMARK 3 7 2.4269 - 2.3054 0.99 2668 159 0.1450 0.1758 REMARK 3 8 2.3054 - 2.2050 0.99 2720 123 0.1501 0.1633 REMARK 3 9 2.2050 - 2.1202 0.99 2670 130 0.1499 0.1795 REMARK 3 10 2.1202 - 2.0470 1.00 2673 165 0.1560 0.2212 REMARK 3 11 2.0470 - 1.9830 1.00 2680 134 0.1528 0.2002 REMARK 3 12 1.9830 - 1.9263 1.00 2683 129 0.1525 0.1918 REMARK 3 13 1.9263 - 1.8756 0.99 2668 129 0.1464 0.2081 REMARK 3 14 1.8756 - 1.8298 1.00 2661 152 0.1407 0.1747 REMARK 3 15 1.8298 - 1.7882 1.00 2664 142 0.1395 0.1810 REMARK 3 16 1.7882 - 1.7502 1.00 2649 152 0.1401 0.1920 REMARK 3 17 1.7502 - 1.7152 1.00 2663 130 0.1456 0.1934 REMARK 3 18 1.7152 - 1.6828 1.00 2665 139 0.1377 0.1858 REMARK 3 19 1.6828 - 1.6527 1.00 2668 133 0.1398 0.1945 REMARK 3 20 1.6527 - 1.6247 1.00 2639 142 0.1444 0.1910 REMARK 3 21 1.6247 - 1.5985 1.00 2690 123 0.1538 0.2124 REMARK 3 22 1.5985 - 1.5739 1.00 2639 136 0.1625 0.2241 REMARK 3 23 1.5739 - 1.5508 1.00 2676 114 0.1654 0.2201 REMARK 3 24 1.5508 - 1.5289 1.00 2643 131 0.1764 0.2274 REMARK 3 25 1.5289 - 1.5083 1.00 2658 148 0.1748 0.2054 REMARK 3 26 1.5083 - 1.4887 1.00 2646 129 0.1735 0.2480 REMARK 3 27 1.4887 - 1.4701 1.00 2639 132 0.1744 0.2224 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.090 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.550 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.45 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6T7L COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 22-OCT-19. REMARK 100 THE DEPOSITION ID IS D_1292104987. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-AUG-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97625 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.1 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 76716 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.470 REMARK 200 RESOLUTION RANGE LOW (A) : 69.090 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 75.80 REMARK 200 R MERGE (I) : 0.13400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 25.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.47 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.51 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 76.20 REMARK 200 R MERGE FOR SHELL (I) : 3.02200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.1 REMARK 200 STARTING MODEL: 1IEM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.78 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 29% W/V PEG6000, 0.01 M ZNCL2, 0.1 M REMARK 280 MES PH=6.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 13555 Y+1/4,X+3/4,-Z+3/4 REMARK 290 14555 -Y+1/4,-X+1/4,-Z+1/4 REMARK 290 15555 Y+3/4,-X+3/4,Z+1/4 REMARK 290 16555 -Y+3/4,X+1/4,Z+3/4 REMARK 290 17555 X+1/4,Z+3/4,-Y+3/4 REMARK 290 18555 -X+3/4,Z+1/4,Y+3/4 REMARK 290 19555 -X+1/4,-Z+1/4,-Y+1/4 REMARK 290 20555 X+3/4,-Z+3/4,Y+1/4 REMARK 290 21555 Z+1/4,Y+3/4,-X+3/4 REMARK 290 22555 Z+3/4,-Y+3/4,X+1/4 REMARK 290 23555 -Z+3/4,Y+1/4,X+3/4 REMARK 290 24555 -Z+1/4,-Y+1/4,-X+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 69.08900 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 69.08900 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 69.08900 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 69.08900 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 69.08900 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 69.08900 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 69.08900 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 69.08900 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 69.08900 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 69.08900 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 69.08900 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 69.08900 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 69.08900 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 69.08900 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 69.08900 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 69.08900 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 69.08900 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 69.08900 REMARK 290 SMTRY1 13 0.000000 1.000000 0.000000 34.54450 REMARK 290 SMTRY2 13 1.000000 0.000000 0.000000 103.63350 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 103.63350 REMARK 290 SMTRY1 14 0.000000 -1.000000 0.000000 34.54450 REMARK 290 SMTRY2 14 -1.000000 0.000000 0.000000 34.54450 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 34.54450 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 103.63350 REMARK 290 SMTRY2 15 -1.000000 0.000000 0.000000 103.63350 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 34.54450 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 103.63350 REMARK 290 SMTRY2 16 1.000000 0.000000 0.000000 34.54450 REMARK 290 SMTRY3 16 0.000000 0.000000 1.000000 103.63350 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 34.54450 REMARK 290 SMTRY2 17 0.000000 0.000000 1.000000 103.63350 REMARK 290 SMTRY3 17 0.000000 -1.000000 0.000000 103.63350 REMARK 290 SMTRY1 18 -1.000000 0.000000 0.000000 103.63350 REMARK 290 SMTRY2 18 0.000000 0.000000 1.000000 34.54450 REMARK 290 SMTRY3 18 0.000000 1.000000 0.000000 103.63350 REMARK 290 SMTRY1 19 -1.000000 0.000000 0.000000 34.54450 REMARK 290 SMTRY2 19 0.000000 0.000000 -1.000000 34.54450 REMARK 290 SMTRY3 19 0.000000 -1.000000 0.000000 34.54450 REMARK 290 SMTRY1 20 1.000000 0.000000 0.000000 103.63350 REMARK 290 SMTRY2 20 0.000000 0.000000 -1.000000 103.63350 REMARK 290 SMTRY3 20 0.000000 1.000000 0.000000 34.54450 REMARK 290 SMTRY1 21 0.000000 0.000000 1.000000 34.54450 REMARK 290 SMTRY2 21 0.000000 1.000000 0.000000 103.63350 REMARK 290 SMTRY3 21 -1.000000 0.000000 0.000000 103.63350 REMARK 290 SMTRY1 22 0.000000 0.000000 1.000000 103.63350 REMARK 290 SMTRY2 22 0.000000 -1.000000 0.000000 103.63350 REMARK 290 SMTRY3 22 1.000000 0.000000 0.000000 34.54450 REMARK 290 SMTRY1 23 0.000000 0.000000 -1.000000 103.63350 REMARK 290 SMTRY2 23 0.000000 1.000000 0.000000 34.54450 REMARK 290 SMTRY3 23 1.000000 0.000000 0.000000 103.63350 REMARK 290 SMTRY1 24 0.000000 0.000000 -1.000000 34.54450 REMARK 290 SMTRY2 24 0.000000 -1.000000 0.000000 34.54450 REMARK 290 SMTRY3 24 -1.000000 0.000000 0.000000 34.54450 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 970 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13970 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -71.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 ZN ZN A 403 LIES ON A SPECIAL POSITION. REMARK 375 CL CL A 407 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 789 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 862 LIES ON A SPECIAL POSITION. REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 6 CD OE1 NE2 REMARK 470 GLN A 7 CD OE1 NE2 REMARK 470 TYR A 45 OH REMARK 470 LYS A 51 CD CE NZ REMARK 470 LYS A 84 NZ REMARK 470 LYS A 99 CG CD CE NZ REMARK 470 ASN A 102 OD1 ND2 REMARK 470 ASP A 123 OD1 OD2 REMARK 470 GLU A 124 CD OE1 OE2 REMARK 470 LYS A 126 CG CD CE NZ REMARK 470 ARG A 133 NE CZ NH1 NH2 REMARK 470 GLN A 139 OE1 NE2 REMARK 470 LYS A 164 NZ REMARK 470 GLN A 172 CG CD OE1 NE2 REMARK 470 LYS A 183 CE NZ REMARK 470 LYS A 197 CE NZ REMARK 470 ARG A 204 CZ NH1 NH2 REMARK 470 GLU A 205 CD OE1 OE2 REMARK 470 LYS A 207 CD CE NZ REMARK 470 LYS A 246 NZ REMARK 470 LYS A 290 CG CD CE NZ REMARK 470 LYS A 299 CD CE NZ REMARK 470 GLU A 331 OE1 OE2 REMARK 470 LYS A 332 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 756 O HOH A 760 2.06 REMARK 500 OE1 GLU A 196 O HOH A 502 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 154 -62.52 -90.15 REMARK 500 VAL A 178 -60.33 -125.31 REMARK 500 TYR A 221 13.30 -158.18 REMARK 500 ALA A 307 125.24 -39.98 REMARK 500 ASN A 341 41.29 -99.29 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 939 DISTANCE = 5.99 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 403 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 13 NE2 REMARK 620 2 HIS A 13 NE2 0.0 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 404 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 186 NE2 REMARK 620 2 HOH A 531 O 98.3 REMARK 620 3 HOH A 566 O 92.9 87.5 REMARK 620 4 HOH A 765 O 88.8 168.5 83.1 REMARK 620 5 HOH A 807 O 94.4 88.9 172.2 99.7 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MES A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OP0 A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PGE A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 407 DBREF 6T7L A 4 361 UNP P00811 AMPC_ECOLI 20 377 SEQRES 1 A 358 ALA PRO GLN GLN ILE ASN ASP ILE VAL HIS ARG THR ILE SEQRES 2 A 358 THR PRO LEU ILE GLU GLN GLN LYS ILE PRO GLY MET ALA SEQRES 3 A 358 VAL ALA VAL ILE TYR GLN GLY LYS PRO TYR TYR PHE THR SEQRES 4 A 358 TRP GLY TYR ALA ASP ILE ALA LYS LYS GLN PRO VAL THR SEQRES 5 A 358 GLN GLN THR LEU PHE GLU LEU GLY SER VAL SER LYS THR SEQRES 6 A 358 PHE THR GLY VAL LEU GLY GLY ASP ALA ILE ALA ARG GLY SEQRES 7 A 358 GLU ILE LYS LEU SER ASP PRO THR THR LYS TYR TRP PRO SEQRES 8 A 358 GLU LEU THR ALA LYS GLN TRP ASN GLY ILE THR LEU LEU SEQRES 9 A 358 HIS LEU ALA THR TYR THR ALA GLY GLY LEU PRO LEU GLN SEQRES 10 A 358 VAL PRO ASP GLU VAL LYS SER SER SER ASP LEU LEU ARG SEQRES 11 A 358 PHE TYR GLN ASN TRP GLN PRO ALA TRP ALA PRO GLY THR SEQRES 12 A 358 GLN ARG LEU TYR ALA ASN SER SER ILE GLY LEU PHE GLY SEQRES 13 A 358 ALA LEU ALA VAL LYS PRO SER GLY LEU SER PHE GLU GLN SEQRES 14 A 358 ALA MET GLN THR ARG VAL PHE GLN PRO LEU LYS LEU ASN SEQRES 15 A 358 HIS THR TRP ILE ASN VAL PRO PRO ALA GLU GLU LYS ASN SEQRES 16 A 358 TYR ALA TRP GLY TYR ARG GLU GLY LYS ALA VAL HIS VAL SEQRES 17 A 358 SER PRO GLY ALA LEU ASP ALA GLU ALA TYR GLY VAL LYS SEQRES 18 A 358 SER THR ILE GLU ASP MET ALA ARG TRP VAL GLN SER ASN SEQRES 19 A 358 LEU LYS PRO LEU ASP ILE ASN GLU LYS THR LEU GLN GLN SEQRES 20 A 358 GLY ILE GLN LEU ALA GLN SER ARG TYR TRP GLN THR GLY SEQRES 21 A 358 ASP MET TYR GLN GLY LEU GLY TRP GLU MET LEU ASP TRP SEQRES 22 A 358 PRO VAL ASN PRO ASP SER ILE ILE ASN GLY SER ASP ASN SEQRES 23 A 358 LYS ILE ALA LEU ALA ALA ARG PRO VAL LYS ALA ILE THR SEQRES 24 A 358 PRO PRO THR PRO ALA VAL ARG ALA SER TRP VAL HIS LYS SEQRES 25 A 358 THR GLY ALA THR GLY GLY PHE GLY SER TYR VAL ALA PHE SEQRES 26 A 358 ILE PRO GLU LYS GLU LEU GLY ILE VAL MET LEU ALA ASN SEQRES 27 A 358 LYS ASN TYR PRO ASN PRO ALA ARG VAL ASP ALA ALA TRP SEQRES 28 A 358 GLN ILE LEU ASN ALA LEU GLN HET MES A 401 12 HET OP0 A 402 21 HET ZN A 403 1 HET ZN A 404 1 HET SO4 A 405 5 HET PGE A 406 10 HET CL A 407 1 HETNAM MES 2-(N-MORPHOLINO)-ETHANESULFONIC ACID HETNAM OP0 (2S,5R)-N-(2-AMINOETHOXY)-1-FORMYL-5-[(SULFOOXY) HETNAM 2 OP0 AMINO]PIPERIDINE-2-CARBOXAMIDE HETNAM ZN ZINC ION HETNAM SO4 SULFATE ION HETNAM PGE TRIETHYLENE GLYCOL HETNAM CL CHLORIDE ION FORMUL 2 MES C6 H13 N O4 S FORMUL 3 OP0 C9 H18 N4 O7 S FORMUL 4 ZN 2(ZN 2+) FORMUL 6 SO4 O4 S 2- FORMUL 7 PGE C6 H14 O4 FORMUL 8 CL CL 1- FORMUL 9 HOH *438(H2 O) HELIX 1 AA1 PRO A 5 LYS A 24 1 20 HELIX 2 AA2 VAL A 65 ARG A 80 1 16 HELIX 3 AA3 PRO A 88 TRP A 93 1 6 HELIX 4 AA4 ALA A 98 ASN A 102 5 5 HELIX 5 AA5 THR A 105 THR A 111 1 7 HELIX 6 AA6 SER A 127 TRP A 138 1 12 HELIX 7 AA7 ALA A 151 VAL A 163 1 13 HELIX 8 AA8 LYS A 164 GLY A 167 5 4 HELIX 9 AA9 SER A 169 VAL A 178 1 10 HELIX 10 AB1 PRO A 192 TYR A 199 5 8 HELIX 11 AB2 LEU A 216 TYR A 221 1 6 HELIX 12 AB3 THR A 226 LYS A 239 1 14 HELIX 13 AB4 PRO A 240 ILE A 243 5 4 HELIX 14 AB5 GLU A 245 GLN A 256 1 12 HELIX 15 AB6 ASN A 279 SER A 287 1 9 HELIX 16 AB7 ASP A 288 LEU A 293 1 6 HELIX 17 AB8 PRO A 330 GLU A 333 5 4 HELIX 18 AB9 PRO A 345 GLN A 361 1 17 SHEET 1 AA110 GLN A 52 PRO A 53 0 SHEET 2 AA110 LYS A 37 ASP A 47 -1 N ALA A 46 O GLN A 52 SHEET 3 AA110 GLY A 27 TYR A 34 -1 N VAL A 30 O PHE A 41 SHEET 4 AA110 LEU A 334 ALA A 340 -1 O LEU A 339 N ALA A 29 SHEET 5 AA110 PHE A 322 ILE A 329 -1 N ILE A 329 O LEU A 334 SHEET 6 AA110 SER A 311 THR A 319 -1 N GLY A 317 O SER A 324 SHEET 7 AA110 GLU A 272 ASP A 275 -1 N LEU A 274 O TRP A 312 SHEET 8 AA110 MET A 265 GLN A 267 -1 N TYR A 266 O MET A 273 SHEET 9 AA110 ARG A 258 THR A 262 -1 N TYR A 259 O GLN A 267 SHEET 10 AA110 LYS A 299 THR A 305 -1 O LYS A 299 N GLN A 261 SHEET 1 AA2 3 PHE A 60 GLU A 61 0 SHEET 2 AA2 3 LYS A 224 SER A 225 -1 O SER A 225 N PHE A 60 SHEET 3 AA2 3 THR A 187 TRP A 188 -1 N TRP A 188 O LYS A 224 SHEET 1 AA3 2 GLN A 147 ARG A 148 0 SHEET 2 AA3 2 ARG A 296 PRO A 297 -1 O ARG A 296 N ARG A 148 SHEET 1 AA4 2 GLY A 202 ARG A 204 0 SHEET 2 AA4 2 LYS A 207 VAL A 209 -1 O VAL A 209 N GLY A 202 LINK OG SER A 64 C1 OP0 A 402 1555 1555 1.42 LINK NE2 HIS A 13 ZN ZN A 403 1555 1555 2.06 LINK NE2 HIS A 13 ZN ZN A 403 1555 5555 2.06 LINK NE2 HIS A 186 ZN ZN A 404 1555 1555 2.17 LINK ZN ZN A 404 O HOH A 531 1555 1555 2.03 LINK ZN ZN A 404 O HOH A 566 1555 1555 2.29 LINK ZN ZN A 404 O HOH A 765 1555 1555 2.10 LINK ZN ZN A 404 O HOH A 807 1555 1555 2.24 CISPEP 1 TRP A 276 PRO A 277 0 2.99 CISPEP 2 THR A 302 PRO A 303 0 -2.50 SITE 1 AC1 9 GLN A 22 LYS A 24 TYR A 40 PHE A 41 SITE 2 AC1 9 THR A 42 GLN A 56 HOH A 503 HOH A 550 SITE 3 AC1 9 HOH A 781 SITE 1 AC2 14 SER A 64 GLN A 120 TYR A 150 ASN A 152 SITE 2 AC2 14 TYR A 221 LYS A 315 THR A 316 GLY A 317 SITE 3 AC2 14 ALA A 318 ASN A 346 SO4 A 405 HOH A 522 SITE 4 AC2 14 HOH A 661 HOH A 785 SITE 1 AC3 2 HIS A 13 CL A 407 SITE 1 AC4 5 HIS A 186 HOH A 531 HOH A 566 HOH A 765 SITE 2 AC4 5 HOH A 807 SITE 1 AC5 6 ALA A 318 THR A 319 GLY A 320 ASN A 343 SITE 2 AC5 6 OP0 A 402 HOH A 580 SITE 1 AC6 4 TRP A 93 LEU A 131 LYS A 164 HOH A 794 SITE 1 AC7 3 HIS A 13 ZN A 403 HOH A 789 CRYST1 138.178 138.178 138.178 90.00 90.00 90.00 P 43 3 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007237 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007237 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007237 0.00000