HEADER TRANSCRIPTION 25-OCT-19 6T93 TITLE NUCLEOSOME WITH OCT4-SOX2 MOTIF AT SHL-6 COMPND MOL_ID: 1; COMPND 2 MOLECULE: HISTONE H3.1; COMPND 3 CHAIN: A, E; COMPND 4 SYNONYM: HISTONE H3/A,HISTONE H3/B,HISTONE H3/C,HISTONE H3/D,HISTONE COMPND 5 H3/F,HISTONE H3/H,HISTONE H3/I,HISTONE H3/J,HISTONE H3/K,HISTONE COMPND 6 H3/L; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: HISTONE H4; COMPND 10 CHAIN: B, F; COMPND 11 ENGINEERED: YES; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: HISTONE H2A TYPE 1-B/E; COMPND 14 CHAIN: C, G; COMPND 15 SYNONYM: HISTONE H2A.2,HISTONE H2A/A,HISTONE H2A/M; COMPND 16 ENGINEERED: YES; COMPND 17 MOL_ID: 4; COMPND 18 MOLECULE: HISTONE H2B TYPE 1-J; COMPND 19 CHAIN: D, H; COMPND 20 SYNONYM: HISTONE H2B.1,HISTONE H2B.R,H2B/R; COMPND 21 ENGINEERED: YES; COMPND 22 MOL_ID: 5; COMPND 23 MOLECULE: DNA (153-MER); COMPND 24 CHAIN: I; COMPND 25 ENGINEERED: YES; COMPND 26 MOL_ID: 6; COMPND 27 MOLECULE: DNA (153-MER); COMPND 28 CHAIN: J; COMPND 29 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HIST1H3A, H3FA, HIST1H3B, H3FL, HIST1H3C, H3FC, HIST1H3D, SOURCE 6 H3FB, HIST1H3E, H3FD, HIST1H3F, H3FI, HIST1H3G, H3FH, HIST1H3H, SOURCE 7 H3FK, HIST1H3I, H3FF, HIST1H3J, H3FJ; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 866768; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_COMMON: HUMAN; SOURCE 13 ORGANISM_TAXID: 9606; SOURCE 14 GENE: HIST1H4A, H4/A, H4FA, HIST1H4B, H4/I, H4FI, HIST1H4C, H4/G, SOURCE 15 H4FG, HIST1H4D, H4/B, H4FB, HIST1H4E, H4/J, H4FJ, HIST1H4F, H4/C, SOURCE 16 H4FC, HIST1H4H, H4/H, H4FH, HIST1H4I, H4/M, H4FM, HIST1H4J, H4/E, SOURCE 17 H4FE, HIST1H4K, H4/D, H4FD, HIST1H4L, H4/K, H4FK, HIST2H4A, H4/N, SOURCE 18 H4F2, H4FN, HIST2H4, HIST2H4B, H4/O, H4FO, HIST4H4; SOURCE 19 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 20 EXPRESSION_SYSTEM_TAXID: 866768; SOURCE 21 MOL_ID: 3; SOURCE 22 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 23 ORGANISM_COMMON: HUMAN; SOURCE 24 ORGANISM_TAXID: 9606; SOURCE 25 GENE: HIST1H2AB, H2AFM, HIST1H2AE, H2AFA; SOURCE 26 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 27 EXPRESSION_SYSTEM_TAXID: 866768; SOURCE 28 MOL_ID: 4; SOURCE 29 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 30 ORGANISM_COMMON: HUMAN; SOURCE 31 ORGANISM_TAXID: 9606; SOURCE 32 GENE: HIST1H2BJ, H2BFR; SOURCE 33 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 34 EXPRESSION_SYSTEM_TAXID: 866768; SOURCE 35 MOL_ID: 5; SOURCE 36 SYNTHETIC: YES; SOURCE 37 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 38 ORGANISM_TAXID: 32630; SOURCE 39 MOL_ID: 6; SOURCE 40 SYNTHETIC: YES; SOURCE 41 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 42 ORGANISM_TAXID: 32630 KEYWDS NUCLEOSOME, OCT4, SOX2, TRANSCRIPTION FACTOR, TRANSCRIPTION EXPDTA ELECTRON MICROSCOPY AUTHOR A.K.MICHAEL,G.KEMPF,S.CAVADINI,R.D.BUNKER,N.H.THOMA REVDAT 3 08-JUL-20 6T93 1 JRNL REVDAT 2 13-MAY-20 6T93 1 JRNL REVDAT 1 06-MAY-20 6T93 0 JRNL AUTH A.K.MICHAEL,R.S.GRAND,L.ISBEL,S.CAVADINI,Z.KOZICKA,G.KEMPF, JRNL AUTH 2 R.D.BUNKER,A.D.SCHENK,A.GRAFF-MEYER,G.R.PATHARE,J.WEISS, JRNL AUTH 3 S.MATSUMOTO,L.BURGER,D.SCHUBELER,N.H.THOMA JRNL TITL MECHANISMS OF OCT4-SOX2 MOTIF READOUT ON NUCLEOSOMES. JRNL REF SCIENCE V. 368 1460 2020 JRNL REFN ESSN 1095-9203 JRNL PMID 32327602 JRNL DOI 10.1126/SCIENCE.ABB0074 REMARK 2 REMARK 2 RESOLUTION. 3.49 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : CRYOSPARC REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.490 REMARK 3 NUMBER OF PARTICLES : 6302 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 6T93 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 26-OCT-19. REMARK 100 THE DEPOSITION ID IS D_1292104808. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : TERNARY COMPLEX OF OCT4-SOX2 REMARK 245 AND SHL+6 NUCLEOSOME; HISTONES; REMARK 245 DNA REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.40 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : GATAN K2 QUANTUM (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : NULL REMARK 245 MAXIMUM DEFOCUS (NM) : NULL REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 45.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DECAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DECAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 55040 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 76990 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -384.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F, G, H, I, J REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 ARG A 3 REMARK 465 THR A 4 REMARK 465 LYS A 5 REMARK 465 GLN A 6 REMARK 465 THR A 7 REMARK 465 ALA A 8 REMARK 465 ARG A 9 REMARK 465 LYS A 10 REMARK 465 SER A 11 REMARK 465 THR A 12 REMARK 465 GLY A 13 REMARK 465 GLY A 14 REMARK 465 LYS A 15 REMARK 465 ALA A 16 REMARK 465 PRO A 17 REMARK 465 ARG A 18 REMARK 465 LYS A 19 REMARK 465 GLN A 20 REMARK 465 LEU A 21 REMARK 465 ALA A 22 REMARK 465 THR A 23 REMARK 465 LYS A 24 REMARK 465 ALA A 25 REMARK 465 ALA A 26 REMARK 465 ARG A 27 REMARK 465 LYS A 28 REMARK 465 SER A 29 REMARK 465 ALA A 30 REMARK 465 PRO A 31 REMARK 465 ALA A 32 REMARK 465 THR A 33 REMARK 465 GLY A 34 REMARK 465 GLY A 35 REMARK 465 VAL A 36 REMARK 465 LYS A 37 REMARK 465 LYS A 38 REMARK 465 ARG A 135 REMARK 465 ALA A 136 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 GLY B 3 REMARK 465 ARG B 4 REMARK 465 GLY B 5 REMARK 465 LYS B 6 REMARK 465 GLY B 7 REMARK 465 GLY B 8 REMARK 465 LYS B 9 REMARK 465 GLY B 10 REMARK 465 LEU B 11 REMARK 465 GLY B 12 REMARK 465 LYS B 13 REMARK 465 GLY B 14 REMARK 465 GLY B 15 REMARK 465 ALA B 16 REMARK 465 LYS B 17 REMARK 465 ARG B 18 REMARK 465 HIS B 19 REMARK 465 ARG B 20 REMARK 465 LYS B 21 REMARK 465 VAL B 22 REMARK 465 GLY C -2 REMARK 465 SER C -1 REMARK 465 HIS C 0 REMARK 465 MET C 1 REMARK 465 SER C 2 REMARK 465 GLY C 3 REMARK 465 ARG C 4 REMARK 465 GLY C 5 REMARK 465 LYS C 6 REMARK 465 GLN C 7 REMARK 465 GLY C 8 REMARK 465 GLY C 9 REMARK 465 LYS C 10 REMARK 465 ALA C 11 REMARK 465 LYS C 120 REMARK 465 THR C 121 REMARK 465 GLU C 122 REMARK 465 SER C 123 REMARK 465 HIS C 124 REMARK 465 HIS C 125 REMARK 465 LYS C 126 REMARK 465 ALA C 127 REMARK 465 LYS C 128 REMARK 465 GLY C 129 REMARK 465 LYS C 130 REMARK 465 GLY D -2 REMARK 465 SER D -1 REMARK 465 HIS D 0 REMARK 465 MET D 1 REMARK 465 PRO D 2 REMARK 465 GLU D 3 REMARK 465 PRO D 4 REMARK 465 ALA D 5 REMARK 465 LYS D 6 REMARK 465 SER D 7 REMARK 465 ALA D 8 REMARK 465 PRO D 9 REMARK 465 ALA D 10 REMARK 465 PRO D 11 REMARK 465 LYS D 12 REMARK 465 LYS D 13 REMARK 465 GLY D 14 REMARK 465 SER D 15 REMARK 465 LYS D 16 REMARK 465 LYS D 17 REMARK 465 ALA D 18 REMARK 465 VAL D 19 REMARK 465 THR D 20 REMARK 465 LYS D 21 REMARK 465 ALA D 22 REMARK 465 GLN D 23 REMARK 465 LYS D 24 REMARK 465 LYS D 25 REMARK 465 ASP D 26 REMARK 465 GLY D 27 REMARK 465 LYS D 28 REMARK 465 LYS D 29 REMARK 465 ARG D 30 REMARK 465 LYS D 31 REMARK 465 LYS D 126 REMARK 465 GLY E -2 REMARK 465 SER E -1 REMARK 465 HIS E 0 REMARK 465 MET E 1 REMARK 465 ALA E 2 REMARK 465 ARG E 3 REMARK 465 THR E 4 REMARK 465 LYS E 5 REMARK 465 GLN E 6 REMARK 465 THR E 7 REMARK 465 ALA E 8 REMARK 465 ARG E 9 REMARK 465 LYS E 10 REMARK 465 SER E 11 REMARK 465 THR E 12 REMARK 465 GLY E 13 REMARK 465 GLY E 14 REMARK 465 LYS E 15 REMARK 465 ALA E 16 REMARK 465 PRO E 17 REMARK 465 ARG E 18 REMARK 465 LYS E 19 REMARK 465 GLN E 20 REMARK 465 LEU E 21 REMARK 465 ALA E 22 REMARK 465 THR E 23 REMARK 465 LYS E 24 REMARK 465 ALA E 25 REMARK 465 ALA E 26 REMARK 465 ARG E 27 REMARK 465 LYS E 28 REMARK 465 SER E 29 REMARK 465 ALA E 30 REMARK 465 PRO E 31 REMARK 465 ALA E 32 REMARK 465 THR E 33 REMARK 465 GLY E 34 REMARK 465 GLY E 35 REMARK 465 VAL E 36 REMARK 465 LYS E 37 REMARK 465 LYS E 38 REMARK 465 ARG E 135 REMARK 465 ALA E 136 REMARK 465 GLY F -2 REMARK 465 SER F -1 REMARK 465 HIS F 0 REMARK 465 MET F 1 REMARK 465 SER F 2 REMARK 465 GLY F 3 REMARK 465 ARG F 4 REMARK 465 GLY F 5 REMARK 465 LYS F 6 REMARK 465 GLY F 7 REMARK 465 GLY F 8 REMARK 465 LYS F 9 REMARK 465 GLY F 10 REMARK 465 LEU F 11 REMARK 465 GLY F 12 REMARK 465 LYS F 13 REMARK 465 GLY F 14 REMARK 465 GLY F 15 REMARK 465 ALA F 16 REMARK 465 LYS F 17 REMARK 465 ARG F 18 REMARK 465 HIS F 19 REMARK 465 ARG F 20 REMARK 465 LYS F 21 REMARK 465 VAL F 22 REMARK 465 GLY G -2 REMARK 465 SER G -1 REMARK 465 HIS G 0 REMARK 465 MET G 1 REMARK 465 SER G 2 REMARK 465 GLY G 3 REMARK 465 ARG G 4 REMARK 465 GLY G 5 REMARK 465 LYS G 6 REMARK 465 GLN G 7 REMARK 465 GLY G 8 REMARK 465 GLY G 9 REMARK 465 LYS G 10 REMARK 465 ALA G 11 REMARK 465 LYS G 120 REMARK 465 THR G 121 REMARK 465 GLU G 122 REMARK 465 SER G 123 REMARK 465 HIS G 124 REMARK 465 HIS G 125 REMARK 465 LYS G 126 REMARK 465 ALA G 127 REMARK 465 LYS G 128 REMARK 465 GLY G 129 REMARK 465 LYS G 130 REMARK 465 GLY H -2 REMARK 465 SER H -1 REMARK 465 HIS H 0 REMARK 465 MET H 1 REMARK 465 PRO H 2 REMARK 465 GLU H 3 REMARK 465 PRO H 4 REMARK 465 ALA H 5 REMARK 465 LYS H 6 REMARK 465 SER H 7 REMARK 465 ALA H 8 REMARK 465 PRO H 9 REMARK 465 ALA H 10 REMARK 465 PRO H 11 REMARK 465 LYS H 12 REMARK 465 LYS H 13 REMARK 465 GLY H 14 REMARK 465 SER H 15 REMARK 465 LYS H 16 REMARK 465 LYS H 17 REMARK 465 ALA H 18 REMARK 465 VAL H 19 REMARK 465 THR H 20 REMARK 465 LYS H 21 REMARK 465 ALA H 22 REMARK 465 GLN H 23 REMARK 465 LYS H 24 REMARK 465 LYS H 25 REMARK 465 ASP H 26 REMARK 465 GLY H 27 REMARK 465 LYS H 28 REMARK 465 LYS H 29 REMARK 465 ARG H 30 REMARK 465 LYS H 31 REMARK 465 LYS H 126 REMARK 465 DA I -2 REMARK 465 DT I 150 REMARK 465 DA J -2 REMARK 465 DT J 150 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 DT I -1 P OP1 OP2 REMARK 470 DT J -1 P OP1 OP2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DC I 1 C3' - O3' - P ANGL. DEV. = 7.3 DEGREES REMARK 500 DG I 3 C3' - O3' - P ANGL. DEV. = 7.6 DEGREES REMARK 500 DT J 15 C3' - O3' - P ANGL. DEV. = 7.8 DEGREES REMARK 500 DT J 89 C3' - O3' - P ANGL. DEV. = 8.6 DEGREES REMARK 500 DG J 94 O4' - C1' - N9 ANGL. DEV. = 1.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS C 37 -152.29 -97.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-10408 RELATED DB: EMDB REMARK 900 OCT4-SOX2 MOTIF AT SHL-6 NUCLEOSOME DBREF 6T93 A 1 136 UNP P68431 H31_HUMAN 1 136 DBREF 6T93 B 1 103 UNP P62805 H4_HUMAN 1 103 DBREF 6T93 C 1 130 UNP P04908 H2A1B_HUMAN 1 130 DBREF 6T93 D 1 126 UNP P06899 H2B1J_HUMAN 1 126 DBREF 6T93 E 1 136 UNP P68431 H31_HUMAN 1 136 DBREF 6T93 F 1 103 UNP P62805 H4_HUMAN 1 103 DBREF 6T93 G 1 130 UNP P04908 H2A1B_HUMAN 1 130 DBREF 6T93 H 1 126 UNP P06899 H2B1J_HUMAN 1 126 DBREF 6T93 I -2 150 PDB 6T93 6T93 -2 150 DBREF 6T93 J -2 150 PDB 6T93 6T93 -2 150 SEQADV 6T93 GLY A -2 UNP P68431 EXPRESSION TAG SEQADV 6T93 SER A -1 UNP P68431 EXPRESSION TAG SEQADV 6T93 HIS A 0 UNP P68431 EXPRESSION TAG SEQADV 6T93 GLY B -2 UNP P62805 EXPRESSION TAG SEQADV 6T93 SER B -1 UNP P62805 EXPRESSION TAG SEQADV 6T93 HIS B 0 UNP P62805 EXPRESSION TAG SEQADV 6T93 GLY C -2 UNP P04908 EXPRESSION TAG SEQADV 6T93 SER C -1 UNP P04908 EXPRESSION TAG SEQADV 6T93 HIS C 0 UNP P04908 EXPRESSION TAG SEQADV 6T93 GLY D -2 UNP P06899 EXPRESSION TAG SEQADV 6T93 SER D -1 UNP P06899 EXPRESSION TAG SEQADV 6T93 HIS D 0 UNP P06899 EXPRESSION TAG SEQADV 6T93 GLY E -2 UNP P68431 EXPRESSION TAG SEQADV 6T93 SER E -1 UNP P68431 EXPRESSION TAG SEQADV 6T93 HIS E 0 UNP P68431 EXPRESSION TAG SEQADV 6T93 GLY F -2 UNP P62805 EXPRESSION TAG SEQADV 6T93 SER F -1 UNP P62805 EXPRESSION TAG SEQADV 6T93 HIS F 0 UNP P62805 EXPRESSION TAG SEQADV 6T93 GLY G -2 UNP P04908 EXPRESSION TAG SEQADV 6T93 SER G -1 UNP P04908 EXPRESSION TAG SEQADV 6T93 HIS G 0 UNP P04908 EXPRESSION TAG SEQADV 6T93 GLY H -2 UNP P06899 EXPRESSION TAG SEQADV 6T93 SER H -1 UNP P06899 EXPRESSION TAG SEQADV 6T93 HIS H 0 UNP P06899 EXPRESSION TAG SEQRES 1 A 139 GLY SER HIS MET ALA ARG THR LYS GLN THR ALA ARG LYS SEQRES 2 A 139 SER THR GLY GLY LYS ALA PRO ARG LYS GLN LEU ALA THR SEQRES 3 A 139 LYS ALA ALA ARG LYS SER ALA PRO ALA THR GLY GLY VAL SEQRES 4 A 139 LYS LYS PRO HIS ARG TYR ARG PRO GLY THR VAL ALA LEU SEQRES 5 A 139 ARG GLU ILE ARG ARG TYR GLN LYS SER THR GLU LEU LEU SEQRES 6 A 139 ILE ARG LYS LEU PRO PHE GLN ARG LEU VAL ARG GLU ILE SEQRES 7 A 139 ALA GLN ASP PHE LYS THR ASP LEU ARG PHE GLN SER SER SEQRES 8 A 139 ALA VAL MET ALA LEU GLN GLU ALA CYS GLU ALA TYR LEU SEQRES 9 A 139 VAL GLY LEU PHE GLU ASP THR ASN LEU CYS ALA ILE HIS SEQRES 10 A 139 ALA LYS ARG VAL THR ILE MET PRO LYS ASP ILE GLN LEU SEQRES 11 A 139 ALA ARG ARG ILE ARG GLY GLU ARG ALA SEQRES 1 B 106 GLY SER HIS MET SER GLY ARG GLY LYS GLY GLY LYS GLY SEQRES 2 B 106 LEU GLY LYS GLY GLY ALA LYS ARG HIS ARG LYS VAL LEU SEQRES 3 B 106 ARG ASP ASN ILE GLN GLY ILE THR LYS PRO ALA ILE ARG SEQRES 4 B 106 ARG LEU ALA ARG ARG GLY GLY VAL LYS ARG ILE SER GLY SEQRES 5 B 106 LEU ILE TYR GLU GLU THR ARG GLY VAL LEU LYS VAL PHE SEQRES 6 B 106 LEU GLU ASN VAL ILE ARG ASP ALA VAL THR TYR THR GLU SEQRES 7 B 106 HIS ALA LYS ARG LYS THR VAL THR ALA MET ASP VAL VAL SEQRES 8 B 106 TYR ALA LEU LYS ARG GLN GLY ARG THR LEU TYR GLY PHE SEQRES 9 B 106 GLY GLY SEQRES 1 C 133 GLY SER HIS MET SER GLY ARG GLY LYS GLN GLY GLY LYS SEQRES 2 C 133 ALA ARG ALA LYS ALA LYS THR ARG SER SER ARG ALA GLY SEQRES 3 C 133 LEU GLN PHE PRO VAL GLY ARG VAL HIS ARG LEU LEU ARG SEQRES 4 C 133 LYS GLY ASN TYR SER GLU ARG VAL GLY ALA GLY ALA PRO SEQRES 5 C 133 VAL TYR LEU ALA ALA VAL LEU GLU TYR LEU THR ALA GLU SEQRES 6 C 133 ILE LEU GLU LEU ALA GLY ASN ALA ALA ARG ASP ASN LYS SEQRES 7 C 133 LYS THR ARG ILE ILE PRO ARG HIS LEU GLN LEU ALA ILE SEQRES 8 C 133 ARG ASN ASP GLU GLU LEU ASN LYS LEU LEU GLY ARG VAL SEQRES 9 C 133 THR ILE ALA GLN GLY GLY VAL LEU PRO ASN ILE GLN ALA SEQRES 10 C 133 VAL LEU LEU PRO LYS LYS THR GLU SER HIS HIS LYS ALA SEQRES 11 C 133 LYS GLY LYS SEQRES 1 D 129 GLY SER HIS MET PRO GLU PRO ALA LYS SER ALA PRO ALA SEQRES 2 D 129 PRO LYS LYS GLY SER LYS LYS ALA VAL THR LYS ALA GLN SEQRES 3 D 129 LYS LYS ASP GLY LYS LYS ARG LYS ARG SER ARG LYS GLU SEQRES 4 D 129 SER TYR SER ILE TYR VAL TYR LYS VAL LEU LYS GLN VAL SEQRES 5 D 129 HIS PRO ASP THR GLY ILE SER SER LYS ALA MET GLY ILE SEQRES 6 D 129 MET ASN SER PHE VAL ASN ASP ILE PHE GLU ARG ILE ALA SEQRES 7 D 129 GLY GLU ALA SER ARG LEU ALA HIS TYR ASN LYS ARG SER SEQRES 8 D 129 THR ILE THR SER ARG GLU ILE GLN THR ALA VAL ARG LEU SEQRES 9 D 129 LEU LEU PRO GLY GLU LEU ALA LYS HIS ALA VAL SER GLU SEQRES 10 D 129 GLY THR LYS ALA VAL THR LYS TYR THR SER ALA LYS SEQRES 1 E 139 GLY SER HIS MET ALA ARG THR LYS GLN THR ALA ARG LYS SEQRES 2 E 139 SER THR GLY GLY LYS ALA PRO ARG LYS GLN LEU ALA THR SEQRES 3 E 139 LYS ALA ALA ARG LYS SER ALA PRO ALA THR GLY GLY VAL SEQRES 4 E 139 LYS LYS PRO HIS ARG TYR ARG PRO GLY THR VAL ALA LEU SEQRES 5 E 139 ARG GLU ILE ARG ARG TYR GLN LYS SER THR GLU LEU LEU SEQRES 6 E 139 ILE ARG LYS LEU PRO PHE GLN ARG LEU VAL ARG GLU ILE SEQRES 7 E 139 ALA GLN ASP PHE LYS THR ASP LEU ARG PHE GLN SER SER SEQRES 8 E 139 ALA VAL MET ALA LEU GLN GLU ALA CYS GLU ALA TYR LEU SEQRES 9 E 139 VAL GLY LEU PHE GLU ASP THR ASN LEU CYS ALA ILE HIS SEQRES 10 E 139 ALA LYS ARG VAL THR ILE MET PRO LYS ASP ILE GLN LEU SEQRES 11 E 139 ALA ARG ARG ILE ARG GLY GLU ARG ALA SEQRES 1 F 106 GLY SER HIS MET SER GLY ARG GLY LYS GLY GLY LYS GLY SEQRES 2 F 106 LEU GLY LYS GLY GLY ALA LYS ARG HIS ARG LYS VAL LEU SEQRES 3 F 106 ARG ASP ASN ILE GLN GLY ILE THR LYS PRO ALA ILE ARG SEQRES 4 F 106 ARG LEU ALA ARG ARG GLY GLY VAL LYS ARG ILE SER GLY SEQRES 5 F 106 LEU ILE TYR GLU GLU THR ARG GLY VAL LEU LYS VAL PHE SEQRES 6 F 106 LEU GLU ASN VAL ILE ARG ASP ALA VAL THR TYR THR GLU SEQRES 7 F 106 HIS ALA LYS ARG LYS THR VAL THR ALA MET ASP VAL VAL SEQRES 8 F 106 TYR ALA LEU LYS ARG GLN GLY ARG THR LEU TYR GLY PHE SEQRES 9 F 106 GLY GLY SEQRES 1 G 133 GLY SER HIS MET SER GLY ARG GLY LYS GLN GLY GLY LYS SEQRES 2 G 133 ALA ARG ALA LYS ALA LYS THR ARG SER SER ARG ALA GLY SEQRES 3 G 133 LEU GLN PHE PRO VAL GLY ARG VAL HIS ARG LEU LEU ARG SEQRES 4 G 133 LYS GLY ASN TYR SER GLU ARG VAL GLY ALA GLY ALA PRO SEQRES 5 G 133 VAL TYR LEU ALA ALA VAL LEU GLU TYR LEU THR ALA GLU SEQRES 6 G 133 ILE LEU GLU LEU ALA GLY ASN ALA ALA ARG ASP ASN LYS SEQRES 7 G 133 LYS THR ARG ILE ILE PRO ARG HIS LEU GLN LEU ALA ILE SEQRES 8 G 133 ARG ASN ASP GLU GLU LEU ASN LYS LEU LEU GLY ARG VAL SEQRES 9 G 133 THR ILE ALA GLN GLY GLY VAL LEU PRO ASN ILE GLN ALA SEQRES 10 G 133 VAL LEU LEU PRO LYS LYS THR GLU SER HIS HIS LYS ALA SEQRES 11 G 133 LYS GLY LYS SEQRES 1 H 129 GLY SER HIS MET PRO GLU PRO ALA LYS SER ALA PRO ALA SEQRES 2 H 129 PRO LYS LYS GLY SER LYS LYS ALA VAL THR LYS ALA GLN SEQRES 3 H 129 LYS LYS ASP GLY LYS LYS ARG LYS ARG SER ARG LYS GLU SEQRES 4 H 129 SER TYR SER ILE TYR VAL TYR LYS VAL LEU LYS GLN VAL SEQRES 5 H 129 HIS PRO ASP THR GLY ILE SER SER LYS ALA MET GLY ILE SEQRES 6 H 129 MET ASN SER PHE VAL ASN ASP ILE PHE GLU ARG ILE ALA SEQRES 7 H 129 GLY GLU ALA SER ARG LEU ALA HIS TYR ASN LYS ARG SER SEQRES 8 H 129 THR ILE THR SER ARG GLU ILE GLN THR ALA VAL ARG LEU SEQRES 9 H 129 LEU LEU PRO GLY GLU LEU ALA LYS HIS ALA VAL SER GLU SEQRES 10 H 129 GLY THR LYS ALA VAL THR LYS TYR THR SER ALA LYS SEQRES 1 I 153 DA DT DC DC DT DG DG DA DG DA DC DT DT SEQRES 2 I 153 DT DG DT DT DA DT DG DC DA DA DA DT DC SEQRES 3 I 153 DC DG DC DT DC DA DA DT DT DG DG DT DC SEQRES 4 I 153 DG DT DA DG DA DC DA DG DC DT DC DT DA SEQRES 5 I 153 DG DC DA DC DC DG DC DT DT DA DA DA DC SEQRES 6 I 153 DG DC DA DC DG DT DA DC DG DC DG DC DT SEQRES 7 I 153 DG DT DC DC DC DC DC DG DC DG DT DT DT SEQRES 8 I 153 DT DA DA DC DC DG DC DC DA DA DG DG DG SEQRES 9 I 153 DG DA DT DT DA DC DT DC DC DC DT DA DG SEQRES 10 I 153 DT DC DT DC DC DA DG DG DC DA DC DG DT SEQRES 11 I 153 DG DT DC DA DG DA DT DA DT DA DT DA DC SEQRES 12 I 153 DA DT DC DC DT DG DT DG DA DT SEQRES 1 J 153 DA DT DC DA DC DA DG DG DA DT DG DT DA SEQRES 2 J 153 DT DA DT DA DT DC DT DG DA DC DA DC DG SEQRES 3 J 153 DT DG DC DC DT DG DG DA DG DA DC DT DA SEQRES 4 J 153 DG DG DG DA DG DT DA DA DT DC DC DC DC SEQRES 5 J 153 DT DT DG DG DC DG DG DT DT DA DA DA DA SEQRES 6 J 153 DC DG DC DG DG DG DG DG DA DC DA DG DC SEQRES 7 J 153 DG DC DG DT DA DC DG DT DG DC DG DT DT SEQRES 8 J 153 DT DA DA DG DC DG DG DT DG DC DT DA DG SEQRES 9 J 153 DA DG DC DT DG DT DC DT DA DC DG DA DC SEQRES 10 J 153 DC DA DA DT DT DG DA DG DC DG DG DA DT SEQRES 11 J 153 DT DT DG DC DA DT DA DA DC DA DA DA DG SEQRES 12 J 153 DT DC DT DC DC DA DG DG DA DT HELIX 1 AA1 GLY A 45 SER A 58 1 14 HELIX 2 AA2 ARG A 64 GLN A 77 1 14 HELIX 3 AA3 GLN A 86 ALA A 115 1 30 HELIX 4 AA4 MET A 121 ARG A 132 1 12 HELIX 5 AA5 ASN B 26 ILE B 30 5 5 HELIX 6 AA6 THR B 31 GLY B 42 1 12 HELIX 7 AA7 LEU B 50 ALA B 77 1 28 HELIX 8 AA8 THR B 83 ARG B 93 1 11 HELIX 9 AA9 THR C 17 GLY C 23 1 7 HELIX 10 AB1 VAL C 28 LYS C 37 1 10 HELIX 11 AB2 GLY C 47 ASN C 74 1 28 HELIX 12 AB3 ILE C 80 ASN C 90 1 11 HELIX 13 AB4 ASP C 91 LEU C 98 1 8 HELIX 14 AB5 GLN C 113 LEU C 117 5 5 HELIX 15 AB6 TYR D 38 HIS D 50 1 13 HELIX 16 AB7 SER D 56 ASN D 85 1 30 HELIX 17 AB8 THR D 91 LEU D 103 1 13 HELIX 18 AB9 PRO D 104 ALA D 125 1 22 HELIX 19 AC1 GLY E 45 SER E 58 1 14 HELIX 20 AC2 ARG E 64 GLN E 77 1 14 HELIX 21 AC3 GLN E 86 ALA E 115 1 30 HELIX 22 AC4 MET E 121 ARG E 132 1 12 HELIX 23 AC5 THR F 31 GLY F 42 1 12 HELIX 24 AC6 LEU F 50 ALA F 77 1 28 HELIX 25 AC7 THR F 83 ARG F 93 1 11 HELIX 26 AC8 THR G 17 ALA G 22 1 6 HELIX 27 AC9 VAL G 28 LYS G 37 1 10 HELIX 28 AD1 GLY G 47 ASP G 73 1 27 HELIX 29 AD2 ILE G 80 ASP G 91 1 12 HELIX 30 AD3 GLU G 93 LEU G 98 1 6 HELIX 31 AD4 GLN G 113 LEU G 117 5 5 HELIX 32 AD5 TYR H 38 GLN H 48 1 11 HELIX 33 AD6 SER H 56 ASN H 85 1 30 HELIX 34 AD7 THR H 91 LEU H 103 1 13 HELIX 35 AD8 PRO H 104 ALA H 125 1 22 SHEET 1 AA1 2 ARG A 84 PHE A 85 0 SHEET 2 AA1 2 THR B 81 VAL B 82 1 O VAL B 82 N ARG A 84 SHEET 1 AA2 2 THR A 119 ILE A 120 0 SHEET 2 AA2 2 ARG B 46 ILE B 47 1 O ARG B 46 N ILE A 120 SHEET 1 AA3 2 LEU B 98 TYR B 99 0 SHEET 2 AA3 2 THR G 102 ILE G 103 1 O THR G 102 N TYR B 99 SHEET 1 AA4 2 ARG C 43 VAL C 44 0 SHEET 2 AA4 2 THR D 89 ILE D 90 1 O ILE D 90 N ARG C 43 SHEET 1 AA5 2 ARG C 78 ILE C 79 0 SHEET 2 AA5 2 GLY D 54 ILE D 55 1 O GLY D 54 N ILE C 79 SHEET 1 AA6 2 VAL C 101 ILE C 103 0 SHEET 2 AA6 2 THR F 97 TYR F 99 1 O THR F 97 N THR C 102 SHEET 1 AA7 2 ARG E 84 PHE E 85 0 SHEET 2 AA7 2 THR F 81 VAL F 82 1 O VAL F 82 N ARG E 84 SHEET 1 AA8 2 THR E 119 ILE E 120 0 SHEET 2 AA8 2 ARG F 46 ILE F 47 1 O ARG F 46 N ILE E 120 SHEET 1 AA9 2 ARG G 43 VAL G 44 0 SHEET 2 AA9 2 THR H 89 ILE H 90 1 O ILE H 90 N ARG G 43 SHEET 1 AB1 2 ARG G 78 ILE G 79 0 SHEET 2 AB1 2 GLY H 54 ILE H 55 1 O GLY H 54 N ILE G 79 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000