HEADER VIRUS LIKE PARTICLE 30-OCT-19 6TAQ TITLE STRUCTURE OF THE DARC2 CAPSID COMPND MOL_ID: 1; COMPND 2 MOLECULE: ACTIVITY-REGULATED CYTOSKELETON ASSOCIATED PROTEIN 2; COMPND 3 CHAIN: B, A, C, D; COMPND 4 SYNONYM: DARC2; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DROSOPHILA MELANOGASTER; SOURCE 3 ORGANISM_COMMON: FRUIT FLY; SOURCE 4 ORGANISM_TAXID: 7227; SOURCE 5 GENE: ARC2, CG13941; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS DARC, GAG, VIRUS, VLP, VIRUS LIKE PARTICLE EXPDTA ELECTRON MICROSCOPY AUTHOR S.ERLENDSSON,D.R.MORADO,J.D.SHEPHERD,J.A.G.BRIGGS REVDAT 4 30-MAR-22 6TAQ 1 REMARK REVDAT 3 19-FEB-20 6TAQ 1 JRNL REVDAT 2 15-JAN-20 6TAQ 1 JRNL REVDAT 1 01-JAN-20 6TAQ 0 JRNL AUTH S.ERLENDSSON,D.R.MORADO,H.B.CULLEN,C.FESCHOTTE,J.D.SHEPHERD, JRNL AUTH 2 J.A.G.BRIGGS JRNL TITL STRUCTURES OF VIRUS-LIKE CAPSIDS FORMED BY THE DROSOPHILA JRNL TITL 2 NEURONAL ARC PROTEINS. JRNL REF NAT.NEUROSCI. V. 23 172 2020 JRNL REFN ISSN 1097-6256 JRNL PMID 31907439 JRNL DOI 10.1038/S41593-019-0569-Y REMARK 2 REMARK 2 RESOLUTION. 3.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : RELION, SERIALEM, DIGITALMICROGRAPH, REMARK 3 RELION, CTFFIND, PHENIX, COOT, UCSF REMARK 3 CHIMERA, PHENIX, RELION, RELION, RELION REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : 6GSE REMARK 3 REFINEMENT SPACE : REAL REMARK 3 REFINEMENT PROTOCOL : AB INITIO MODEL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.900 REMARK 3 NUMBER OF PARTICLES : 1779 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 6TAQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 30-OCT-19. REMARK 100 THE DEPOSITION ID IS D_1292105031. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : DARC2 CAPSIDS REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : 0.10 REMARK 245 SAMPLE SUPPORT DETAILS : 25 MA REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 8.00 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : GATAN K2 SUMMIT (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 800.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 3000.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : 2.70 REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 3500.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : 105000 REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5130 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 43150 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -28.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.638197 -0.262866 0.723607 419.38723 REMARK 350 BIOMT2 2 -0.262866 -0.809017 -0.525731 922.27516 REMARK 350 BIOMT3 2 0.723607 -0.525731 0.447214 125.34245 REMARK 350 BIOMT1 3 -0.447214 -0.525731 0.723607 444.92911 REMARK 350 BIOMT2 3 0.850651 0.000000 0.525731 -133.00932 REMARK 350 BIOMT3 3 -0.276393 0.850651 0.447214 -8.39659 REMARK 350 BIOMT1 4 -0.361803 -0.262866 0.894427 260.71681 REMARK 350 BIOMT2 4 -0.587785 0.809017 0.000000 276.71817 REMARK 350 BIOMT3 4 -0.723607 -0.525731 -0.447214 956.15153 REMARK 350 BIOMT1 5 -0.670820 -0.688191 0.276393 740.39618 REMARK 350 BIOMT2 5 -0.162460 0.500000 0.850651 -65.68881 REMARK 350 BIOMT3 5 -0.723607 0.525731 -0.447214 582.53756 REMARK 350 BIOMT1 6 0.138197 -0.425325 0.894427 140.77934 REMARK 350 BIOMT2 6 -0.951057 -0.309017 0.000000 803.06741 REMARK 350 BIOMT3 6 0.276393 -0.850651 -0.447214 716.27659 REMARK 350 BIOMT1 7 -0.638197 0.262866 0.723607 232.58024 REMARK 350 BIOMT2 7 0.262866 -0.809017 0.525731 363.31363 REMARK 350 BIOMT3 7 0.723607 0.525731 0.447214 -248.27152 REMARK 350 BIOMT1 8 -0.809017 0.587785 0.000000 433.93784 REMARK 350 BIOMT2 8 -0.587785 -0.809017 0.000000 851.65096 REMARK 350 BIOMT3 8 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 9 -0.138197 -0.951057 -0.276393 840.19675 REMARK 350 BIOMT2 9 0.425325 -0.309017 0.850651 12.92102 REMARK 350 BIOMT3 9 -0.894427 0.000000 0.447214 513.46825 REMARK 350 BIOMT1 10 0.670820 0.162460 0.723607 -196.87319 REMARK 350 BIOMT2 10 -0.688191 0.500000 0.525731 236.12025 REMARK 350 BIOMT3 10 -0.276393 -0.850651 0.447214 596.12352 REMARK 350 BIOMT1 11 0.447214 -0.850651 0.276393 400.85393 REMARK 350 BIOMT2 11 -0.525731 0.000000 0.850651 241.05564 REMARK 350 BIOMT3 11 -0.723607 -0.525731 -0.447214 956.15153 REMARK 350 BIOMT1 12 0.052786 0.688191 0.723607 -164.07540 REMARK 350 BIOMT2 12 -0.688191 -0.500000 0.525731 591.44825 REMARK 350 BIOMT3 12 0.723607 -0.525731 0.447214 125.34245 REMARK 350 BIOMT1 13 -0.947214 -0.162460 -0.276393 847.45266 REMARK 350 BIOMT2 13 -0.162460 -0.500000 0.850651 289.63919 REMARK 350 BIOMT3 13 -0.276393 0.850651 0.447214 -8.39659 REMARK 350 BIOMT1 14 -0.138197 0.425325 -0.894427 569.87666 REMARK 350 BIOMT2 14 -0.951057 -0.309017 0.000000 803.06741 REMARK 350 BIOMT3 14 -0.276393 0.850651 0.447214 -8.39659 REMARK 350 BIOMT1 15 0.638197 -0.262866 -0.723607 478.07576 REMARK 350 BIOMT2 15 0.262866 -0.809017 0.525731 363.31363 REMARK 350 BIOMT3 15 -0.723607 -0.525731 -0.447214 956.15153 REMARK 350 BIOMT1 16 0.670820 0.688191 -0.276393 -29.74018 REMARK 350 BIOMT2 16 -0.162460 0.500000 0.850651 -65.68881 REMARK 350 BIOMT3 16 0.723607 -0.525731 0.447214 125.34245 REMARK 350 BIOMT1 17 0.947214 0.162460 0.276393 -136.79666 REMARK 350 BIOMT2 17 -0.162460 -0.500000 0.850651 289.63919 REMARK 350 BIOMT3 17 0.276393 -0.850651 -0.447214 716.27659 REMARK 350 BIOMT1 18 -0.447214 0.850651 -0.276393 309.80207 REMARK 350 BIOMT2 18 -0.525731 0.000000 0.850651 241.05564 REMARK 350 BIOMT3 18 0.723607 0.525731 0.447214 -248.27152 REMARK 350 BIOMT1 19 -0.052786 -0.688191 -0.723607 874.73140 REMARK 350 BIOMT2 19 -0.688191 -0.500000 0.525731 591.44825 REMARK 350 BIOMT3 19 -0.723607 0.525731 -0.447214 582.53756 REMARK 350 BIOMT1 20 0.447214 -0.525731 -0.723607 639.34087 REMARK 350 BIOMT2 20 -0.850651 0.000000 -0.525731 843.66533 REMARK 350 BIOMT3 20 0.276393 0.850651 -0.447214 111.75649 REMARK 350 BIOMT1 21 0.809017 0.587785 0.000000 -140.99495 REMARK 350 BIOMT2 21 0.587785 -0.809017 0.000000 433.93784 REMARK 350 BIOMT3 21 0.000000 0.000000 -1.000000 707.88001 REMARK 350 BIOMT1 22 -0.361803 0.587785 -0.723607 531.14371 REMARK 350 BIOMT2 22 0.262866 0.809017 0.525731 -211.61915 REMARK 350 BIOMT3 22 0.894427 0.000000 -0.447214 194.41176 REMARK 350 BIOMT1 23 0.138197 0.951057 0.276393 -129.54074 REMARK 350 BIOMT2 23 0.425325 -0.309017 0.850651 12.92102 REMARK 350 BIOMT3 23 0.894427 0.000000 -0.447214 194.41176 REMARK 350 BIOMT1 24 -0.670820 -0.162460 -0.723607 907.52920 REMARK 350 BIOMT2 24 -0.688191 0.500000 0.525731 236.12025 REMARK 350 BIOMT3 24 0.276393 0.850651 -0.447214 111.75649 REMARK 350 BIOMT1 25 0.809017 -0.587785 0.000000 276.71817 REMARK 350 BIOMT2 25 -0.587785 -0.809017 0.000000 851.65096 REMARK 350 BIOMT3 25 0.000000 0.000000 -1.000000 707.88001 REMARK 350 BIOMT1 26 0.138197 -0.951057 0.276393 546.33328 REMARK 350 BIOMT2 26 -0.425325 -0.309017 -0.850651 917.33977 REMARK 350 BIOMT3 26 0.894427 0.000000 -0.447214 194.41176 REMARK 350 BIOMT1 27 0.138197 0.425325 0.894427 -161.48071 REMARK 350 BIOMT2 27 0.951057 -0.309017 0.000000 127.19338 REMARK 350 BIOMT3 27 0.276393 0.850651 -0.447214 111.75649 REMARK 350 BIOMT1 28 -1.000000 0.000000 0.000000 710.65601 REMARK 350 BIOMT2 28 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 28 0.000000 0.000000 -1.000000 707.88001 REMARK 350 BIOMT1 29 -0.861803 0.425325 0.276393 412.59425 REMARK 350 BIOMT2 29 0.425325 0.309017 0.850651 -206.68376 REMARK 350 BIOMT3 29 0.276393 0.850651 -0.447214 111.75649 REMARK 350 BIOMT1 30 -0.309017 -0.951057 0.000000 803.06741 REMARK 350 BIOMT2 30 -0.951057 0.309017 0.000000 583.46262 REMARK 350 BIOMT3 30 0.000000 0.000000 -1.000000 707.88001 REMARK 350 BIOMT1 31 0.447214 0.000000 0.894427 -120.15307 REMARK 350 BIOMT2 31 0.000000 -1.000000 0.000000 710.65601 REMARK 350 BIOMT3 31 0.894427 0.000000 -0.447214 194.41176 REMARK 350 BIOMT1 32 0.361803 -0.587785 0.723607 179.51229 REMARK 350 BIOMT2 32 0.262866 0.809017 0.525731 -211.61915 REMARK 350 BIOMT3 32 -0.894427 0.000000 0.447214 513.46825 REMARK 350 BIOMT1 33 -0.447214 0.525731 0.723607 71.31514 REMARK 350 BIOMT2 33 -0.850651 0.000000 -0.525731 843.66533 REMARK 350 BIOMT3 33 -0.276393 -0.850651 0.447214 596.12352 REMARK 350 BIOMT1 34 -0.809017 -0.587785 0.000000 851.65096 REMARK 350 BIOMT2 34 0.587785 -0.809017 0.000000 433.93784 REMARK 350 BIOMT3 34 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 35 -0.947214 0.162460 -0.276393 731.99960 REMARK 350 BIOMT2 35 0.162460 -0.500000 -0.850651 776.34482 REMARK 350 BIOMT3 35 -0.276393 -0.850651 0.447214 596.12352 REMARK 350 BIOMT1 36 0.309017 -0.951057 0.000000 583.46262 REMARK 350 BIOMT2 36 0.951057 0.309017 0.000000 -92.41140 REMARK 350 BIOMT3 36 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 37 0.361803 0.587785 0.723607 -238.20083 REMARK 350 BIOMT2 37 -0.262866 0.809017 -0.525731 347.34237 REMARK 350 BIOMT3 37 -0.894427 0.000000 0.447214 513.46825 REMARK 350 BIOMT1 38 -0.361803 0.262866 0.894427 73.90983 REMARK 350 BIOMT2 38 0.587785 0.809017 0.000000 -140.99495 REMARK 350 BIOMT3 38 -0.723607 0.525731 -0.447214 582.53756 REMARK 350 BIOMT1 39 -0.861803 -0.425325 0.276393 714.85430 REMARK 350 BIOMT2 39 -0.425325 0.309017 -0.850651 697.73499 REMARK 350 BIOMT3 39 0.276393 -0.850651 -0.447214 716.27659 REMARK 350 BIOMT1 40 0.052786 -0.688191 0.723607 324.99164 REMARK 350 BIOMT2 40 0.688191 -0.500000 -0.525731 474.53576 REMARK 350 BIOMT3 40 0.723607 0.525731 0.447214 -248.27152 REMARK 350 BIOMT1 41 -0.447214 -0.850651 -0.276393 914.32218 REMARK 350 BIOMT2 41 0.525731 0.000000 -0.850651 469.60037 REMARK 350 BIOMT3 41 0.723607 -0.525731 0.447214 125.34245 REMARK 350 BIOMT1 42 0.670820 -0.162460 0.723607 -81.42013 REMARK 350 BIOMT2 42 0.688191 0.500000 -0.525731 119.20775 REMARK 350 BIOMT3 42 -0.276393 0.850651 0.447214 -8.39659 REMARK 350 BIOMT1 43 -0.670820 0.688191 0.276393 251.32914 REMARK 350 BIOMT2 43 0.162460 0.500000 -0.850651 421.01682 REMARK 350 BIOMT3 43 -0.723607 -0.525731 -0.447214 956.15153 REMARK 350 BIOMT1 44 -0.309017 0.951057 0.000000 127.19338 REMARK 350 BIOMT2 44 0.951057 0.309017 0.000000 -92.41140 REMARK 350 BIOMT3 44 0.000000 0.000000 -1.000000 707.88001 REMARK 350 BIOMT1 45 -0.361803 -0.587785 -0.723607 948.85683 REMARK 350 BIOMT2 45 -0.262866 0.809017 -0.525731 347.34237 REMARK 350 BIOMT3 45 0.894427 0.000000 -0.447214 194.41176 REMARK 350 BIOMT1 46 0.947214 -0.162460 0.276393 -21.34359 REMARK 350 BIOMT2 46 0.162460 -0.500000 -0.850651 776.34482 REMARK 350 BIOMT3 46 0.276393 0.850651 -0.447214 111.75649 REMARK 350 BIOMT1 47 0.670820 -0.688191 -0.276393 459.32686 REMARK 350 BIOMT2 47 0.162460 0.500000 -0.850651 421.01682 REMARK 350 BIOMT3 47 0.723607 0.525731 0.447214 -248.27152 REMARK 350 BIOMT1 48 0.447214 0.850651 0.276393 -203.66617 REMARK 350 BIOMT2 48 0.525731 0.000000 -0.850651 469.60037 REMARK 350 BIOMT3 48 -0.723607 0.525731 -0.447214 582.53756 REMARK 350 BIOMT1 49 -0.670820 0.162460 -0.723607 792.07613 REMARK 350 BIOMT2 49 0.688191 0.500000 -0.525731 119.20775 REMARK 350 BIOMT3 49 0.276393 -0.850651 -0.447214 716.27659 REMARK 350 BIOMT1 50 0.447214 0.525731 -0.723607 265.72690 REMARK 350 BIOMT2 50 0.850651 0.000000 0.525731 -133.00932 REMARK 350 BIOMT3 50 0.276393 -0.850651 -0.447214 716.27659 REMARK 350 BIOMT1 51 0.361803 0.262866 -0.894427 449.93919 REMARK 350 BIOMT2 51 -0.587785 0.809017 0.000000 276.71817 REMARK 350 BIOMT3 51 0.723607 0.525731 0.447214 -248.27152 REMARK 350 BIOMT1 52 0.638197 0.262866 -0.723607 291.26878 REMARK 350 BIOMT2 52 -0.262866 -0.809017 -0.525731 922.27516 REMARK 350 BIOMT3 52 -0.723607 0.525731 -0.447214 582.53756 REMARK 350 BIOMT1 53 0.861803 0.425325 -0.276393 -4.19829 REMARK 350 BIOMT2 53 -0.425325 0.309017 -0.850651 697.73499 REMARK 350 BIOMT3 53 -0.276393 0.850651 0.447214 -8.39659 REMARK 350 BIOMT1 54 -0.052786 0.688191 -0.723607 385.66436 REMARK 350 BIOMT2 54 0.688191 -0.500000 -0.525731 474.53576 REMARK 350 BIOMT3 54 -0.723607 -0.525731 -0.447214 956.15153 REMARK 350 BIOMT1 55 0.361803 -0.262866 -0.894427 636.74618 REMARK 350 BIOMT2 55 0.587785 0.809017 0.000000 -140.99495 REMARK 350 BIOMT3 55 0.723607 -0.525731 0.447214 125.34245 REMARK 350 BIOMT1 56 0.861803 -0.425325 -0.276393 298.06176 REMARK 350 BIOMT2 56 0.425325 0.309017 0.850651 -206.68376 REMARK 350 BIOMT3 56 -0.276393 -0.850651 0.447214 596.12352 REMARK 350 BIOMT1 57 0.309017 0.951057 0.000000 -92.41140 REMARK 350 BIOMT2 57 -0.951057 0.309017 0.000000 583.46262 REMARK 350 BIOMT3 57 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 58 -0.447214 0.000000 -0.894427 830.80908 REMARK 350 BIOMT2 58 0.000000 -1.000000 0.000000 710.65601 REMARK 350 BIOMT3 58 -0.894427 0.000000 0.447214 513.46825 REMARK 350 BIOMT1 59 -0.138197 0.951057 -0.276393 164.32272 REMARK 350 BIOMT2 59 -0.425325 -0.309017 -0.850651 917.33977 REMARK 350 BIOMT3 59 -0.894427 0.000000 0.447214 513.46825 REMARK 350 BIOMT1 60 -0.138197 -0.425325 -0.894427 872.13671 REMARK 350 BIOMT2 60 0.951057 -0.309017 0.000000 127.19338 REMARK 350 BIOMT3 60 -0.276393 -0.850651 0.447214 596.12352 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 465 GLN B 3 REMARK 465 MET B 4 REMARK 465 SER B 5 REMARK 465 ASP B 6 REMARK 465 GLU B 7 REMARK 465 GLN B 8 REMARK 465 PHE B 9 REMARK 465 ARG B 10 REMARK 465 ILE B 11 REMARK 465 PHE B 12 REMARK 465 ILE B 13 REMARK 465 GLU B 14 REMARK 465 THR B 15 REMARK 465 ILE B 16 REMARK 465 LYS B 17 REMARK 465 SER B 18 REMARK 465 LEU B 19 REMARK 465 GLY B 20 REMARK 465 PRO B 21 REMARK 465 ILE B 22 REMARK 465 LYS B 23 REMARK 465 GLU B 24 REMARK 465 GLU B 25 REMARK 465 PRO B 26 REMARK 465 PRO B 27 REMARK 465 SER B 28 REMARK 465 HIS B 193 REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 GLN A 3 REMARK 465 MET A 4 REMARK 465 SER A 5 REMARK 465 ASP A 6 REMARK 465 GLU A 7 REMARK 465 GLN A 8 REMARK 465 PHE A 9 REMARK 465 ARG A 10 REMARK 465 ILE A 11 REMARK 465 PHE A 12 REMARK 465 ILE A 13 REMARK 465 GLU A 14 REMARK 465 THR A 15 REMARK 465 ILE A 16 REMARK 465 LYS A 17 REMARK 465 SER A 18 REMARK 465 LEU A 19 REMARK 465 GLY A 20 REMARK 465 PRO A 21 REMARK 465 ILE A 22 REMARK 465 LYS A 23 REMARK 465 GLU A 24 REMARK 465 GLU A 25 REMARK 465 PRO A 26 REMARK 465 PRO A 27 REMARK 465 SER A 28 REMARK 465 HIS A 193 REMARK 465 MET C 1 REMARK 465 THR C 2 REMARK 465 GLN C 3 REMARK 465 MET C 4 REMARK 465 SER C 5 REMARK 465 ASP C 6 REMARK 465 GLU C 7 REMARK 465 GLN C 8 REMARK 465 PHE C 9 REMARK 465 ARG C 10 REMARK 465 ILE C 11 REMARK 465 PHE C 12 REMARK 465 ILE C 13 REMARK 465 GLU C 14 REMARK 465 THR C 15 REMARK 465 ILE C 16 REMARK 465 LYS C 17 REMARK 465 SER C 18 REMARK 465 LEU C 19 REMARK 465 GLY C 20 REMARK 465 PRO C 21 REMARK 465 ILE C 22 REMARK 465 LYS C 23 REMARK 465 GLU C 24 REMARK 465 GLU C 25 REMARK 465 PRO C 26 REMARK 465 PRO C 27 REMARK 465 SER C 28 REMARK 465 HIS C 193 REMARK 465 MET D 1 REMARK 465 THR D 2 REMARK 465 GLN D 3 REMARK 465 MET D 4 REMARK 465 SER D 5 REMARK 465 ASP D 6 REMARK 465 GLU D 7 REMARK 465 GLN D 8 REMARK 465 PHE D 9 REMARK 465 ARG D 10 REMARK 465 ILE D 11 REMARK 465 PHE D 12 REMARK 465 ILE D 13 REMARK 465 GLU D 14 REMARK 465 THR D 15 REMARK 465 ILE D 16 REMARK 465 LYS D 17 REMARK 465 SER D 18 REMARK 465 LEU D 19 REMARK 465 GLY D 20 REMARK 465 PRO D 21 REMARK 465 ILE D 22 REMARK 465 LYS D 23 REMARK 465 GLU D 24 REMARK 465 GLU D 25 REMARK 465 PRO D 26 REMARK 465 PRO D 27 REMARK 465 SER D 28 REMARK 465 HIS D 193 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP C 156 NH1 ARG C 172 1.28 REMARK 500 O ASP C 150 OE2 GLU C 154 1.34 REMARK 500 OG SER B 112 OD2 ASP A 156 1.59 REMARK 500 O ASP C 150 CD GLU C 154 1.63 REMARK 500 O ASP C 150 OE1 GLU C 154 1.72 REMARK 500 OD2 ASP B 156 OG SER A 112 2.08 REMARK 500 O PHE B 157 CD2 LEU B 161 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER B 79 -161.85 -169.54 REMARK 500 THR B 109 70.22 44.37 REMARK 500 LYS B 123 -168.21 -104.20 REMARK 500 PRO B 164 4.13 -59.49 REMARK 500 SER A 79 -153.15 -140.24 REMARK 500 HIS A 173 -4.77 72.00 REMARK 500 SER C 79 -158.03 -82.02 REMARK 500 HIS C 173 -2.11 72.18 REMARK 500 PHE D 32 60.57 60.40 REMARK 500 SER D 79 -154.04 -138.85 REMARK 500 PRO D 111 -178.61 -69.74 REMARK 500 ASP D 127 58.16 32.33 REMARK 500 PRO D 164 5.16 -69.43 REMARK 500 HIS D 173 -1.82 82.52 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-10424 RELATED DB: EMDB REMARK 900 STRUCTURE OF THE DARC2 CAPSID DBREF 6TAQ B 1 193 UNP Q7JV70 ARC2_DROME 1 193 DBREF 6TAQ A 1 193 UNP Q7JV70 ARC2_DROME 1 193 DBREF 6TAQ C 1 193 UNP Q7JV70 ARC2_DROME 1 193 DBREF 6TAQ D 1 193 UNP Q7JV70 ARC2_DROME 1 193 SEQRES 1 B 193 MET THR GLN MET SER ASP GLU GLN PHE ARG ILE PHE ILE SEQRES 2 B 193 GLU THR ILE LYS SER LEU GLY PRO ILE LYS GLU GLU PRO SEQRES 3 B 193 PRO SER LYS GLY SER PHE SER ASN CYS THR VAL ARG PHE SEQRES 4 B 193 SER GLY GLN ARG ASP HIS ASP ALA VAL ASP GLU PHE ILE SEQRES 5 B 193 ASN ALA VAL GLU THR TYR LYS GLU VAL GLU GLY ILE SER SEQRES 6 B 193 ASP LYS ASP ALA LEU LYS GLY LEU PRO LEU LEU PHE LYS SEQRES 7 B 193 SER ILE ALA VAL VAL TRP TRP LYS GLY VAL ARG ARG ASP SEQRES 8 B 193 ALA LYS THR TRP SER ASP ALA LEU GLN LEU LEU ARG ASP SEQRES 9 B 193 HIS PHE SER PRO THR LYS PRO SER TYR GLN ILE TYR MET SEQRES 10 B 193 GLU ILE PHE GLU THR LYS GLN SER TYR ASP GLU VAL ILE SEQRES 11 B 193 ASP SER PHE ILE CYS LYS GLN ARG ALA LEU LEU ALA LYS SEQRES 12 B 193 LEU PRO GLU GLY ARG HIS ASP GLU GLU THR GLU LEU ASP SEQRES 13 B 193 PHE ILE TYR GLY LEU MET GLN PRO LYS TYR ARG GLU SER SEQRES 14 B 193 ILE PRO ARG HIS GLU VAL LYS THR PHE ARG GLU LEU LEU SEQRES 15 B 193 ASP ARG GLY ARG THR VAL GLU ARG THR ARG HIS SEQRES 1 A 193 MET THR GLN MET SER ASP GLU GLN PHE ARG ILE PHE ILE SEQRES 2 A 193 GLU THR ILE LYS SER LEU GLY PRO ILE LYS GLU GLU PRO SEQRES 3 A 193 PRO SER LYS GLY SER PHE SER ASN CYS THR VAL ARG PHE SEQRES 4 A 193 SER GLY GLN ARG ASP HIS ASP ALA VAL ASP GLU PHE ILE SEQRES 5 A 193 ASN ALA VAL GLU THR TYR LYS GLU VAL GLU GLY ILE SER SEQRES 6 A 193 ASP LYS ASP ALA LEU LYS GLY LEU PRO LEU LEU PHE LYS SEQRES 7 A 193 SER ILE ALA VAL VAL TRP TRP LYS GLY VAL ARG ARG ASP SEQRES 8 A 193 ALA LYS THR TRP SER ASP ALA LEU GLN LEU LEU ARG ASP SEQRES 9 A 193 HIS PHE SER PRO THR LYS PRO SER TYR GLN ILE TYR MET SEQRES 10 A 193 GLU ILE PHE GLU THR LYS GLN SER TYR ASP GLU VAL ILE SEQRES 11 A 193 ASP SER PHE ILE CYS LYS GLN ARG ALA LEU LEU ALA LYS SEQRES 12 A 193 LEU PRO GLU GLY ARG HIS ASP GLU GLU THR GLU LEU ASP SEQRES 13 A 193 PHE ILE TYR GLY LEU MET GLN PRO LYS TYR ARG GLU SER SEQRES 14 A 193 ILE PRO ARG HIS GLU VAL LYS THR PHE ARG GLU LEU LEU SEQRES 15 A 193 ASP ARG GLY ARG THR VAL GLU ARG THR ARG HIS SEQRES 1 C 193 MET THR GLN MET SER ASP GLU GLN PHE ARG ILE PHE ILE SEQRES 2 C 193 GLU THR ILE LYS SER LEU GLY PRO ILE LYS GLU GLU PRO SEQRES 3 C 193 PRO SER LYS GLY SER PHE SER ASN CYS THR VAL ARG PHE SEQRES 4 C 193 SER GLY GLN ARG ASP HIS ASP ALA VAL ASP GLU PHE ILE SEQRES 5 C 193 ASN ALA VAL GLU THR TYR LYS GLU VAL GLU GLY ILE SER SEQRES 6 C 193 ASP LYS ASP ALA LEU LYS GLY LEU PRO LEU LEU PHE LYS SEQRES 7 C 193 SER ILE ALA VAL VAL TRP TRP LYS GLY VAL ARG ARG ASP SEQRES 8 C 193 ALA LYS THR TRP SER ASP ALA LEU GLN LEU LEU ARG ASP SEQRES 9 C 193 HIS PHE SER PRO THR LYS PRO SER TYR GLN ILE TYR MET SEQRES 10 C 193 GLU ILE PHE GLU THR LYS GLN SER TYR ASP GLU VAL ILE SEQRES 11 C 193 ASP SER PHE ILE CYS LYS GLN ARG ALA LEU LEU ALA LYS SEQRES 12 C 193 LEU PRO GLU GLY ARG HIS ASP GLU GLU THR GLU LEU ASP SEQRES 13 C 193 PHE ILE TYR GLY LEU MET GLN PRO LYS TYR ARG GLU SER SEQRES 14 C 193 ILE PRO ARG HIS GLU VAL LYS THR PHE ARG GLU LEU LEU SEQRES 15 C 193 ASP ARG GLY ARG THR VAL GLU ARG THR ARG HIS SEQRES 1 D 193 MET THR GLN MET SER ASP GLU GLN PHE ARG ILE PHE ILE SEQRES 2 D 193 GLU THR ILE LYS SER LEU GLY PRO ILE LYS GLU GLU PRO SEQRES 3 D 193 PRO SER LYS GLY SER PHE SER ASN CYS THR VAL ARG PHE SEQRES 4 D 193 SER GLY GLN ARG ASP HIS ASP ALA VAL ASP GLU PHE ILE SEQRES 5 D 193 ASN ALA VAL GLU THR TYR LYS GLU VAL GLU GLY ILE SER SEQRES 6 D 193 ASP LYS ASP ALA LEU LYS GLY LEU PRO LEU LEU PHE LYS SEQRES 7 D 193 SER ILE ALA VAL VAL TRP TRP LYS GLY VAL ARG ARG ASP SEQRES 8 D 193 ALA LYS THR TRP SER ASP ALA LEU GLN LEU LEU ARG ASP SEQRES 9 D 193 HIS PHE SER PRO THR LYS PRO SER TYR GLN ILE TYR MET SEQRES 10 D 193 GLU ILE PHE GLU THR LYS GLN SER TYR ASP GLU VAL ILE SEQRES 11 D 193 ASP SER PHE ILE CYS LYS GLN ARG ALA LEU LEU ALA LYS SEQRES 12 D 193 LEU PRO GLU GLY ARG HIS ASP GLU GLU THR GLU LEU ASP SEQRES 13 D 193 PHE ILE TYR GLY LEU MET GLN PRO LYS TYR ARG GLU SER SEQRES 14 D 193 ILE PRO ARG HIS GLU VAL LYS THR PHE ARG GLU LEU LEU SEQRES 15 D 193 ASP ARG GLY ARG THR VAL GLU ARG THR ARG HIS HELIX 1 AA1 ASP B 44 GLY B 63 1 20 HELIX 2 AA2 GLY B 72 LEU B 76 5 5 HELIX 3 AA3 ILE B 80 VAL B 88 1 9 HELIX 4 AA4 ARG B 89 ALA B 92 5 4 HELIX 5 AA5 THR B 94 SER B 107 1 14 HELIX 6 AA6 PRO B 111 PHE B 120 1 10 HELIX 7 AA7 VAL B 129 ALA B 142 1 14 HELIX 8 AA8 ASP B 150 MET B 162 1 13 HELIX 9 AA9 PHE B 178 ARG B 192 1 15 HELIX 10 AB1 ASP A 44 GLY A 63 1 20 HELIX 11 AB2 SER A 65 LEU A 70 1 6 HELIX 12 AB3 GLY A 72 LEU A 76 5 5 HELIX 13 AB4 SER A 79 LYS A 86 1 8 HELIX 14 AB5 VAL A 88 ALA A 92 5 5 HELIX 15 AB6 THR A 94 SER A 107 1 14 HELIX 16 AB7 PRO A 111 PHE A 120 1 10 HELIX 17 AB8 VAL A 129 ALA A 142 1 14 HELIX 18 AB9 GLU A 151 TYR A 159 1 9 HELIX 19 AC1 GLN A 163 GLU A 168 1 6 HELIX 20 AC2 THR A 177 ARG A 192 1 16 HELIX 21 AC3 ASP C 44 GLY C 63 1 20 HELIX 22 AC4 SER C 65 GLY C 72 1 8 HELIX 23 AC5 LEU C 73 LEU C 76 5 4 HELIX 24 AC6 ILE C 80 LYS C 86 1 7 HELIX 25 AC7 VAL C 88 ALA C 92 5 5 HELIX 26 AC8 THR C 94 SER C 107 1 14 HELIX 27 AC9 PRO C 111 PHE C 120 1 10 HELIX 28 AD1 VAL C 129 ALA C 142 1 14 HELIX 29 AD2 ASP C 150 LEU C 161 1 12 HELIX 30 AD3 GLN C 163 GLU C 168 1 6 HELIX 31 AD4 PHE C 178 ARG C 192 1 15 HELIX 32 AD5 ASP D 44 GLY D 63 1 20 HELIX 33 AD6 LYS D 67 GLY D 72 1 6 HELIX 34 AD7 LEU D 73 LEU D 76 5 4 HELIX 35 AD8 SER D 79 VAL D 88 1 10 HELIX 36 AD9 THR D 94 SER D 107 1 14 HELIX 37 AE1 PRO D 111 ILE D 119 1 9 HELIX 38 AE2 VAL D 129 ALA D 142 1 14 HELIX 39 AE3 ASP D 150 MET D 162 1 13 HELIX 40 AE4 GLN D 163 GLU D 168 1 6 HELIX 41 AE5 THR D 177 ARG D 192 1 16 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000