HEADER HYDROLASE 04-NOV-19 6TBW TITLE CRYSTAL STRUCTURE OF AMPC FROM E.COLI WITH AVIBACTAM COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-LACTAMASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CEPHALOSPORINASE; COMPND 5 EC: 3.5.2.6; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI K-12; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 GENE: AMPC, AMPA, B4150, JW4111; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI STR. K-12 SUBSTR. W3110; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 316407 KEYWDS BETA LACTAMASE, ANTIBIOTIC RESISTANCE, DIAZABICYCLOOCTANE, DBO, KEYWDS 2 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR P.A.LANG,T.M.LEISSING,C.J.SCHOFIELD,J.BREM REVDAT 4 24-JAN-24 6TBW 1 REMARK REVDAT 3 03-FEB-21 6TBW 1 JRNL REVDAT 2 02-DEC-20 6TBW 1 JRNL REVDAT 1 18-NOV-20 6TBW 0 JRNL AUTH P.A.LANG,T.M.LEISSING,M.G.P.PAGE,C.J.SCHOFIELD,J.BREM JRNL TITL STRUCTURAL INVESTIGATIONS OF THE INHIBITION OF ESCHERICHIA JRNL TITL 2 COLI AMPC BETA-LACTAMASE BY DIAZABICYCLOOCTANES. JRNL REF ANTIMICROB.AGENTS CHEMOTHER. V. 65 2021 JRNL REFN ESSN 1098-6596 JRNL PMID 33199391 JRNL DOI 10.1128/AAC.02073-20 REMARK 2 REMARK 2 RESOLUTION. 1.51 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.15.2_3472 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.51 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 79.72 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 70643 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.159 REMARK 3 R VALUE (WORKING SET) : 0.158 REMARK 3 FREE R VALUE : 0.181 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.920 REMARK 3 FREE R VALUE TEST SET COUNT : 3477 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 79.7200 - 4.4146 1.00 2981 148 0.1705 0.1988 REMARK 3 2 4.4146 - 3.5040 1.00 2783 154 0.1333 0.1556 REMARK 3 3 3.5040 - 3.0610 1.00 2754 146 0.1564 0.1958 REMARK 3 4 3.0610 - 2.7811 1.00 2727 144 0.1560 0.1608 REMARK 3 5 2.7811 - 2.5818 1.00 2723 138 0.1543 0.1789 REMARK 3 6 2.5818 - 2.4296 1.00 2732 127 0.1494 0.1820 REMARK 3 7 2.4296 - 2.3079 1.00 2686 139 0.1425 0.1574 REMARK 3 8 2.3079 - 2.2074 1.00 2701 129 0.1510 0.1644 REMARK 3 9 2.2074 - 2.1224 1.00 2670 139 0.1476 0.1679 REMARK 3 10 2.1224 - 2.0492 1.00 2675 135 0.1566 0.1784 REMARK 3 11 2.0492 - 1.9851 1.00 2693 142 0.1641 0.1906 REMARK 3 12 1.9851 - 1.9283 1.00 2677 113 0.1594 0.1753 REMARK 3 13 1.9283 - 1.8776 1.00 2629 146 0.1705 0.1917 REMARK 3 14 1.8776 - 1.8318 1.00 2692 136 0.1664 0.2061 REMARK 3 15 1.8318 - 1.7901 1.00 2625 158 0.1620 0.1932 REMARK 3 16 1.7901 - 1.7520 1.00 2673 123 0.1721 0.1839 REMARK 3 17 1.7520 - 1.7170 1.00 2622 152 0.1745 0.1880 REMARK 3 18 1.7170 - 1.6846 1.00 2651 121 0.1745 0.1631 REMARK 3 19 1.6846 - 1.6545 1.00 2666 137 0.1805 0.1788 REMARK 3 20 1.6545 - 1.6264 1.00 2603 148 0.1810 0.1885 REMARK 3 21 1.6264 - 1.6002 1.00 2678 134 0.1939 0.2332 REMARK 3 22 1.6002 - 1.5756 1.00 2605 126 0.1987 0.2347 REMARK 3 23 1.5756 - 1.5524 1.00 2646 143 0.2031 0.2021 REMARK 3 24 1.5524 - 1.5305 1.00 2636 158 0.2127 0.2356 REMARK 3 25 1.5305 - 1.5100 1.00 2638 141 0.2383 0.2548 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.120 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 16.260 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.22 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 4 THROUGH 23 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.2339 -0.3002 6.7243 REMARK 3 T TENSOR REMARK 3 T11: 0.1267 T22: 0.1736 REMARK 3 T33: 0.1064 T12: 0.0035 REMARK 3 T13: 0.0063 T23: -0.0066 REMARK 3 L TENSOR REMARK 3 L11: 3.9841 L22: 7.2016 REMARK 3 L33: 5.1671 L12: -0.3478 REMARK 3 L13: -1.8596 L23: -2.5335 REMARK 3 S TENSOR REMARK 3 S11: 0.0120 S12: 0.1258 S13: -0.0728 REMARK 3 S21: -0.3687 S22: -0.1298 S23: -0.1628 REMARK 3 S31: 0.1651 S32: -0.0892 S33: 0.1037 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 24 THROUGH 54 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.4302 1.4574 17.6071 REMARK 3 T TENSOR REMARK 3 T11: 0.1084 T22: 0.1357 REMARK 3 T33: 0.1004 T12: -0.0008 REMARK 3 T13: 0.0053 T23: -0.0009 REMARK 3 L TENSOR REMARK 3 L11: 4.1359 L22: 6.6162 REMARK 3 L33: 2.6965 L12: 2.6534 REMARK 3 L13: -0.2271 L23: 1.2439 REMARK 3 S TENSOR REMARK 3 S11: 0.1665 S12: -0.2291 S13: -0.0021 REMARK 3 S21: 0.3067 S22: -0.1131 S23: -0.2449 REMARK 3 S31: -0.0224 S32: 0.2492 S33: -0.0625 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 55 THROUGH 79 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.0085 3.7852 29.3436 REMARK 3 T TENSOR REMARK 3 T11: 0.2024 T22: 0.1308 REMARK 3 T33: 0.1112 T12: -0.0252 REMARK 3 T13: 0.0041 T23: -0.0249 REMARK 3 L TENSOR REMARK 3 L11: 7.1789 L22: 0.5184 REMARK 3 L33: 3.3454 L12: 1.1365 REMARK 3 L13: -4.0098 L23: -0.4400 REMARK 3 S TENSOR REMARK 3 S11: 0.1196 S12: -0.2026 S13: 0.0036 REMARK 3 S21: 0.1804 S22: -0.0687 S23: -0.0479 REMARK 3 S31: -0.1861 S32: 0.1935 S33: -0.0473 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 80 THROUGH 98 ) REMARK 3 ORIGIN FOR THE GROUP (A): -30.4462 8.2680 43.5332 REMARK 3 T TENSOR REMARK 3 T11: 0.4055 T22: 0.2670 REMARK 3 T33: 0.2404 T12: -0.0003 REMARK 3 T13: 0.1491 T23: -0.0249 REMARK 3 L TENSOR REMARK 3 L11: 2.6883 L22: 4.8985 REMARK 3 L33: 1.2868 L12: -1.8702 REMARK 3 L13: -0.5865 L23: 1.8905 REMARK 3 S TENSOR REMARK 3 S11: 0.0940 S12: -0.3923 S13: 0.2685 REMARK 3 S21: 0.4630 S22: 0.1313 S23: 0.2580 REMARK 3 S31: -0.3594 S32: -0.1079 S33: -0.1829 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 99 THROUGH 162 ) REMARK 3 ORIGIN FOR THE GROUP (A): -27.8274 16.1435 33.8736 REMARK 3 T TENSOR REMARK 3 T11: 0.3905 T22: 0.2112 REMARK 3 T33: 0.2934 T12: 0.0565 REMARK 3 T13: 0.1728 T23: 0.0059 REMARK 3 L TENSOR REMARK 3 L11: 1.1201 L22: 2.1578 REMARK 3 L33: 2.4011 L12: -0.2260 REMARK 3 L13: -1.3395 L23: 0.3382 REMARK 3 S TENSOR REMARK 3 S11: 0.4026 S12: -0.0977 S13: 0.4929 REMARK 3 S21: 0.3232 S22: 0.0436 S23: 0.0678 REMARK 3 S31: -0.6795 S32: -0.2458 S33: -0.2452 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 163 THROUGH 256 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.2465 1.6644 32.9125 REMARK 3 T TENSOR REMARK 3 T11: 0.2130 T22: 0.2039 REMARK 3 T33: 0.1248 T12: -0.0284 REMARK 3 T13: -0.0121 T23: -0.0089 REMARK 3 L TENSOR REMARK 3 L11: 2.5273 L22: 1.1891 REMARK 3 L33: 1.9788 L12: 0.5662 REMARK 3 L13: -1.4573 L23: -0.3274 REMARK 3 S TENSOR REMARK 3 S11: 0.0718 S12: -0.4062 S13: 0.0339 REMARK 3 S21: 0.2810 S22: -0.0757 S23: -0.0853 REMARK 3 S31: -0.0895 S32: 0.3222 S33: 0.0131 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 257 THROUGH 275 ) REMARK 3 ORIGIN FOR THE GROUP (A): -28.4276 1.6592 21.2964 REMARK 3 T TENSOR REMARK 3 T11: 0.1477 T22: 0.2137 REMARK 3 T33: 0.1411 T12: 0.0066 REMARK 3 T13: 0.0240 T23: 0.0443 REMARK 3 L TENSOR REMARK 3 L11: 5.2667 L22: 2.5764 REMARK 3 L33: 6.9857 L12: -0.2907 REMARK 3 L13: -0.7433 L23: 1.9535 REMARK 3 S TENSOR REMARK 3 S11: 0.0428 S12: 0.6377 S13: 0.1655 REMARK 3 S21: -0.1107 S22: 0.1047 S23: 0.1427 REMARK 3 S31: -0.2090 S32: -0.4788 S33: -0.1318 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 276 THROUGH 297 ) REMARK 3 ORIGIN FOR THE GROUP (A): -24.2641 7.5008 12.4433 REMARK 3 T TENSOR REMARK 3 T11: 0.1667 T22: 0.3266 REMARK 3 T33: 0.1798 T12: 0.0514 REMARK 3 T13: 0.0030 T23: 0.0417 REMARK 3 L TENSOR REMARK 3 L11: 2.6114 L22: 2.8501 REMARK 3 L33: 2.2942 L12: 0.1302 REMARK 3 L13: -1.8647 L23: -1.0543 REMARK 3 S TENSOR REMARK 3 S11: 0.1214 S12: 0.4456 S13: 0.2753 REMARK 3 S21: 0.0355 S22: 0.0413 S23: 0.2527 REMARK 3 S31: -0.1600 S32: -0.4962 S33: -0.1437 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 298 THROUGH 361 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.8384 0.7971 16.9626 REMARK 3 T TENSOR REMARK 3 T11: 0.1262 T22: 0.1272 REMARK 3 T33: 0.1080 T12: -0.0017 REMARK 3 T13: -0.0055 T23: -0.0002 REMARK 3 L TENSOR REMARK 3 L11: 2.6975 L22: 1.0357 REMARK 3 L33: 2.4086 L12: -0.0309 REMARK 3 L13: -1.5606 L23: -0.3023 REMARK 3 S TENSOR REMARK 3 S11: -0.0003 S12: 0.2257 S13: -0.0563 REMARK 3 S21: -0.0114 S22: 0.0285 S23: 0.0837 REMARK 3 S31: 0.0360 S32: -0.2477 S33: -0.0137 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6TBW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 05-NOV-19. REMARK 100 THE DEPOSITION ID IS D_1292105218. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-SEP-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97624 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 70726 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.510 REMARK 200 RESOLUTION RANGE LOW (A) : 79.830 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 77.60 REMARK 200 R MERGE (I) : 0.11200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 29.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.51 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.55 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 72.80 REMARK 200 R MERGE FOR SHELL (I) : 2.95800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.3 REMARK 200 STARTING MODEL: 1IEM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.61 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.77 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% W/V PEG6000, 0.01 M ZNCL2, 0.1 M REMARK 280 MES PH=6.0, PH 6.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 13555 Y+1/4,X+3/4,-Z+3/4 REMARK 290 14555 -Y+1/4,-X+1/4,-Z+1/4 REMARK 290 15555 Y+3/4,-X+3/4,Z+1/4 REMARK 290 16555 -Y+3/4,X+1/4,Z+3/4 REMARK 290 17555 X+1/4,Z+3/4,-Y+3/4 REMARK 290 18555 -X+3/4,Z+1/4,Y+3/4 REMARK 290 19555 -X+1/4,-Z+1/4,-Y+1/4 REMARK 290 20555 X+3/4,-Z+3/4,Y+1/4 REMARK 290 21555 Z+1/4,Y+3/4,-X+3/4 REMARK 290 22555 Z+3/4,-Y+3/4,X+1/4 REMARK 290 23555 -Z+3/4,Y+1/4,X+3/4 REMARK 290 24555 -Z+1/4,-Y+1/4,-X+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 69.04150 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 69.04150 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 69.04150 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 69.04150 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 69.04150 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 69.04150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 69.04150 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 69.04150 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 69.04150 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 69.04150 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 69.04150 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 69.04150 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 69.04150 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 69.04150 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 69.04150 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 69.04150 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 69.04150 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 69.04150 REMARK 290 SMTRY1 13 0.000000 1.000000 0.000000 34.52075 REMARK 290 SMTRY2 13 1.000000 0.000000 0.000000 103.56225 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 103.56225 REMARK 290 SMTRY1 14 0.000000 -1.000000 0.000000 34.52075 REMARK 290 SMTRY2 14 -1.000000 0.000000 0.000000 34.52075 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 34.52075 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 103.56225 REMARK 290 SMTRY2 15 -1.000000 0.000000 0.000000 103.56225 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 34.52075 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 103.56225 REMARK 290 SMTRY2 16 1.000000 0.000000 0.000000 34.52075 REMARK 290 SMTRY3 16 0.000000 0.000000 1.000000 103.56225 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 34.52075 REMARK 290 SMTRY2 17 0.000000 0.000000 1.000000 103.56225 REMARK 290 SMTRY3 17 0.000000 -1.000000 0.000000 103.56225 REMARK 290 SMTRY1 18 -1.000000 0.000000 0.000000 103.56225 REMARK 290 SMTRY2 18 0.000000 0.000000 1.000000 34.52075 REMARK 290 SMTRY3 18 0.000000 1.000000 0.000000 103.56225 REMARK 290 SMTRY1 19 -1.000000 0.000000 0.000000 34.52075 REMARK 290 SMTRY2 19 0.000000 0.000000 -1.000000 34.52075 REMARK 290 SMTRY3 19 0.000000 -1.000000 0.000000 34.52075 REMARK 290 SMTRY1 20 1.000000 0.000000 0.000000 103.56225 REMARK 290 SMTRY2 20 0.000000 0.000000 -1.000000 103.56225 REMARK 290 SMTRY3 20 0.000000 1.000000 0.000000 34.52075 REMARK 290 SMTRY1 21 0.000000 0.000000 1.000000 34.52075 REMARK 290 SMTRY2 21 0.000000 1.000000 0.000000 103.56225 REMARK 290 SMTRY3 21 -1.000000 0.000000 0.000000 103.56225 REMARK 290 SMTRY1 22 0.000000 0.000000 1.000000 103.56225 REMARK 290 SMTRY2 22 0.000000 -1.000000 0.000000 103.56225 REMARK 290 SMTRY3 22 1.000000 0.000000 0.000000 34.52075 REMARK 290 SMTRY1 23 0.000000 0.000000 -1.000000 103.56225 REMARK 290 SMTRY2 23 0.000000 1.000000 0.000000 34.52075 REMARK 290 SMTRY3 23 1.000000 0.000000 0.000000 103.56225 REMARK 290 SMTRY1 24 0.000000 0.000000 -1.000000 34.52075 REMARK 290 SMTRY2 24 0.000000 -1.000000 0.000000 34.52075 REMARK 290 SMTRY3 24 -1.000000 0.000000 0.000000 34.52075 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 600 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13650 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -59.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 ZN ZN A 403 LIES ON A SPECIAL POSITION. REMARK 375 CL CL A 405 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 827 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 853 LIES ON A SPECIAL POSITION. REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 6 CD OE1 NE2 REMARK 470 GLN A 7 CD OE1 NE2 REMARK 470 LYS A 51 CD CE NZ REMARK 470 GLN A 57 CD OE1 NE2 REMARK 470 LYS A 84 NZ REMARK 470 LYS A 99 CG CD CE NZ REMARK 470 ASN A 102 CG OD1 ND2 REMARK 470 ASP A 123 OD1 OD2 REMARK 470 GLU A 124 CG CD OE1 OE2 REMARK 470 LYS A 126 CG CD CE NZ REMARK 470 ARG A 133 CD NE CZ NH1 NH2 REMARK 470 GLN A 139 CD OE1 NE2 REMARK 470 LYS A 164 CE NZ REMARK 470 GLN A 172 CD OE1 NE2 REMARK 470 LYS A 183 CE NZ REMARK 470 LYS A 197 CE NZ REMARK 470 ARG A 204 NE CZ NH1 NH2 REMARK 470 GLU A 205 CD OE1 OE2 REMARK 470 LYS A 207 CD CE NZ REMARK 470 SER A 212 OG REMARK 470 LYS A 246 NZ REMARK 470 LYS A 290 CG CD CE NZ REMARK 470 LYS A 299 CE NZ REMARK 470 GLU A 331 CD OE1 OE2 REMARK 470 LYS A 332 NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 709 O HOH A 754 2.16 REMARK 500 O HOH A 859 O HOH A 864 2.18 REMARK 500 O HOH A 641 O HOH A 677 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 740 O HOH A 778 24555 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 178 -58.70 -124.54 REMARK 500 TYR A 221 16.43 -157.03 REMARK 500 ASN A 341 42.36 -99.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 884 DISTANCE = 5.92 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 403 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 13 NE2 REMARK 620 2 HIS A 13 NE2 0.0 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 404 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 186 NE2 REMARK 620 2 HOH A 523 O 90.1 REMARK 620 3 HOH A 525 O 96.2 82.6 REMARK 620 4 HOH A 716 O 90.6 89.2 169.3 REMARK 620 5 HOH A 768 O 96.2 173.7 96.6 90.9 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PGE A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NXL A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 405 DBREF 6TBW A 4 361 UNP P00811 AMPC_ECOLI 20 377 SEQRES 1 A 358 ALA PRO GLN GLN ILE ASN ASP ILE VAL HIS ARG THR ILE SEQRES 2 A 358 THR PRO LEU ILE GLU GLN GLN LYS ILE PRO GLY MET ALA SEQRES 3 A 358 VAL ALA VAL ILE TYR GLN GLY LYS PRO TYR TYR PHE THR SEQRES 4 A 358 TRP GLY TYR ALA ASP ILE ALA LYS LYS GLN PRO VAL THR SEQRES 5 A 358 GLN GLN THR LEU PHE GLU LEU GLY SER VAL SER LYS THR SEQRES 6 A 358 PHE THR GLY VAL LEU GLY GLY ASP ALA ILE ALA ARG GLY SEQRES 7 A 358 GLU ILE LYS LEU SER ASP PRO THR THR LYS TYR TRP PRO SEQRES 8 A 358 GLU LEU THR ALA LYS GLN TRP ASN GLY ILE THR LEU LEU SEQRES 9 A 358 HIS LEU ALA THR TYR THR ALA GLY GLY LEU PRO LEU GLN SEQRES 10 A 358 VAL PRO ASP GLU VAL LYS SER SER SER ASP LEU LEU ARG SEQRES 11 A 358 PHE TYR GLN ASN TRP GLN PRO ALA TRP ALA PRO GLY THR SEQRES 12 A 358 GLN ARG LEU TYR ALA ASN SER SER ILE GLY LEU PHE GLY SEQRES 13 A 358 ALA LEU ALA VAL LYS PRO SER GLY LEU SER PHE GLU GLN SEQRES 14 A 358 ALA MET GLN THR ARG VAL PHE GLN PRO LEU LYS LEU ASN SEQRES 15 A 358 HIS THR TRP ILE ASN VAL PRO PRO ALA GLU GLU LYS ASN SEQRES 16 A 358 TYR ALA TRP GLY TYR ARG GLU GLY LYS ALA VAL HIS VAL SEQRES 17 A 358 SER PRO GLY ALA LEU ASP ALA GLU ALA TYR GLY VAL LYS SEQRES 18 A 358 SER THR ILE GLU ASP MET ALA ARG TRP VAL GLN SER ASN SEQRES 19 A 358 LEU LYS PRO LEU ASP ILE ASN GLU LYS THR LEU GLN GLN SEQRES 20 A 358 GLY ILE GLN LEU ALA GLN SER ARG TYR TRP GLN THR GLY SEQRES 21 A 358 ASP MET TYR GLN GLY LEU GLY TRP GLU MET LEU ASP TRP SEQRES 22 A 358 PRO VAL ASN PRO ASP SER ILE ILE ASN GLY SER ASP ASN SEQRES 23 A 358 LYS ILE ALA LEU ALA ALA ARG PRO VAL LYS ALA ILE THR SEQRES 24 A 358 PRO PRO THR PRO ALA VAL ARG ALA SER TRP VAL HIS LYS SEQRES 25 A 358 THR GLY ALA THR GLY GLY PHE GLY SER TYR VAL ALA PHE SEQRES 26 A 358 ILE PRO GLU LYS GLU LEU GLY ILE VAL MET LEU ALA ASN SEQRES 27 A 358 LYS ASN TYR PRO ASN PRO ALA ARG VAL ASP ALA ALA TRP SEQRES 28 A 358 GLN ILE LEU ASN ALA LEU GLN HET PGE A 401 10 HET NXL A 402 17 HET ZN A 403 1 HET ZN A 404 1 HET CL A 405 1 HETNAM PGE TRIETHYLENE GLYCOL HETNAM NXL (2S,5R)-1-FORMYL-5-[(SULFOOXY)AMINO]PIPERIDINE-2- HETNAM 2 NXL CARBOXAMIDE HETNAM ZN ZINC ION HETNAM CL CHLORIDE ION HETSYN NXL AVIBACTAM, BOUND FORM; NXL104, BOUND FORM FORMUL 2 PGE C6 H14 O4 FORMUL 3 NXL C7 H13 N3 O6 S FORMUL 4 ZN 2(ZN 2+) FORMUL 6 CL CL 1- FORMUL 7 HOH *384(H2 O) HELIX 1 AA1 PRO A 5 LYS A 24 1 20 HELIX 2 AA2 VAL A 65 ARG A 80 1 16 HELIX 3 AA3 PRO A 88 TRP A 93 1 6 HELIX 4 AA4 ALA A 98 ASN A 102 5 5 HELIX 5 AA5 THR A 105 THR A 111 1 7 HELIX 6 AA6 SER A 127 TRP A 138 1 12 HELIX 7 AA7 ALA A 151 VAL A 163 1 13 HELIX 8 AA8 SER A 169 VAL A 178 1 10 HELIX 9 AA9 PRO A 192 TYR A 199 5 8 HELIX 10 AB1 LEU A 216 TYR A 221 1 6 HELIX 11 AB2 THR A 226 LYS A 239 1 14 HELIX 12 AB3 PRO A 240 ILE A 243 5 4 HELIX 13 AB4 GLU A 245 GLN A 256 1 12 HELIX 14 AB5 ASN A 279 SER A 287 1 9 HELIX 15 AB6 ASP A 288 LEU A 293 1 6 HELIX 16 AB7 PRO A 330 GLU A 333 5 4 HELIX 17 AB8 PRO A 345 GLN A 361 1 17 SHEET 1 AA110 GLN A 52 PRO A 53 0 SHEET 2 AA110 LYS A 37 ASP A 47 -1 N ALA A 46 O GLN A 52 SHEET 3 AA110 GLY A 27 TYR A 34 -1 N VAL A 30 O PHE A 41 SHEET 4 AA110 LEU A 334 ALA A 340 -1 O LEU A 339 N ALA A 29 SHEET 5 AA110 PHE A 322 ILE A 329 -1 N ILE A 329 O LEU A 334 SHEET 6 AA110 SER A 311 THR A 319 -1 N GLY A 317 O SER A 324 SHEET 7 AA110 GLU A 272 ASP A 275 -1 N LEU A 274 O TRP A 312 SHEET 8 AA110 MET A 265 GLN A 267 -1 N TYR A 266 O MET A 273 SHEET 9 AA110 ARG A 258 THR A 262 -1 N TYR A 259 O GLN A 267 SHEET 10 AA110 LYS A 299 THR A 305 -1 O LYS A 299 N GLN A 261 SHEET 1 AA2 3 PHE A 60 GLU A 61 0 SHEET 2 AA2 3 LYS A 224 SER A 225 -1 O SER A 225 N PHE A 60 SHEET 3 AA2 3 THR A 187 TRP A 188 -1 N TRP A 188 O LYS A 224 SHEET 1 AA3 2 GLN A 147 ARG A 148 0 SHEET 2 AA3 2 ARG A 296 PRO A 297 -1 O ARG A 296 N ARG A 148 SHEET 1 AA4 2 GLY A 202 ARG A 204 0 SHEET 2 AA4 2 LYS A 207 VAL A 209 -1 O VAL A 209 N GLY A 202 LINK OG SER A 64 CAN NXL A 402 1555 1555 1.39 LINK NE2 HIS A 13 ZN ZN A 403 1555 1555 2.04 LINK NE2 HIS A 13 ZN ZN A 403 1555 5555 2.04 LINK NE2 HIS A 186 ZN ZN A 404 1555 1555 2.11 LINK ZN ZN A 404 O HOH A 523 1555 1555 2.12 LINK ZN ZN A 404 O HOH A 525 1555 1555 2.12 LINK ZN ZN A 404 O HOH A 716 1555 1555 1.98 LINK ZN ZN A 404 O HOH A 768 1555 1555 2.16 CISPEP 1 TRP A 276 PRO A 277 0 2.13 CISPEP 2 THR A 302 PRO A 303 0 -6.79 SITE 1 AC1 3 TRP A 93 LEU A 131 HOH A 723 SITE 1 AC2 15 SER A 64 GLN A 120 TYR A 150 ASN A 152 SITE 2 AC2 15 LEU A 293 LYS A 315 THR A 316 GLY A 317 SITE 3 AC2 15 ALA A 318 ASN A 346 HOH A 501 HOH A 641 SITE 4 AC2 15 HOH A 669 HOH A 728 HOH A 749 SITE 1 AC3 2 HIS A 13 CL A 405 SITE 1 AC4 5 HIS A 186 HOH A 523 HOH A 525 HOH A 716 SITE 2 AC4 5 HOH A 768 SITE 1 AC5 3 HIS A 13 ZN A 403 HOH A 853 CRYST1 138.083 138.083 138.083 90.00 90.00 90.00 P 43 3 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007242 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007242 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007242 0.00000