HEADER PEPTIDE BINDING PROTEIN 06-NOV-19 6TCH TITLE BINARY COMPLEX OF 14-3-3 SIGMA AND A HIGH-AFFINITY NON-CANONICAL 9-MER TITLE 2 PEPTIDE BINDER COMPND MOL_ID: 1; COMPND 2 MOLECULE: 14-3-3 PROTEIN SIGMA; COMPND 3 CHAIN: B; COMPND 4 SYNONYM: EPITHELIAL CELL MARKER PROTEIN 1,STRATIFIN; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: DLY-NVA-PPN-KCJ-SEP-PPN-B3S-BAL-PPN-LYS; COMPND 8 CHAIN: A; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SFN, HME1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 11 ORGANISM_TAXID: 32630 KEYWDS NON-CANONICAL PEPTIDE, 14-3-3 PROTEIN SIGMA, PROTEIN-PEPTIDE KEYWDS 2 INTERACTION, PHOSPHOPEPTIDE, NON-NATURAL AMINO ACIDS, PROTEIN KEYWDS 3 BINDING, PEPTIDE BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR B.A.SOMSEN,C.OTTMANN REVDAT 4 24-JAN-24 6TCH 1 REMARK REVDAT 3 15-NOV-23 6TCH 1 LINK ATOM REVDAT 2 08-JUL-20 6TCH 1 JRNL REVDAT 1 01-JUL-20 6TCH 0 JRNL AUTH A.J.QUARTARARO,Z.P.GATES,B.A.SOMSEN,N.HARTRAMPF,X.YE, JRNL AUTH 2 A.SHIMADA,Y.KAJIHARA,C.OTTMANN,B.L.PENTELUTE JRNL TITL ULTRA-LARGE CHEMICAL LIBRARIES FOR THE DISCOVERY OF JRNL TITL 2 HIGH-AFFINITY PEPTIDE BINDERS. JRNL REF NAT COMMUN V. 11 3183 2020 JRNL REFN ESSN 2041-1723 JRNL PMID 32576815 JRNL DOI 10.1038/S41467-020-16920-3 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.15.2_3472 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.08 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 27297 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.150 REMARK 3 R VALUE (WORKING SET) : 0.148 REMARK 3 FREE R VALUE : 0.184 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.040 REMARK 3 FREE R VALUE TEST SET COUNT : 1377 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 34.0820 - 3.8793 1.00 2735 141 0.1664 0.1762 REMARK 3 2 3.8793 - 3.0797 1.00 2650 139 0.1407 0.1664 REMARK 3 3 3.0797 - 2.6906 1.00 2585 145 0.1487 0.2043 REMARK 3 4 2.6906 - 2.4447 1.00 2595 140 0.1424 0.1747 REMARK 3 5 2.4447 - 2.2695 1.00 2563 146 0.1345 0.1774 REMARK 3 6 2.2695 - 2.1357 1.00 2592 124 0.1365 0.1752 REMARK 3 7 2.1357 - 2.0288 1.00 2542 138 0.1365 0.1867 REMARK 3 8 2.0288 - 1.9405 1.00 2580 129 0.1477 0.1873 REMARK 3 9 1.9405 - 1.8658 1.00 2549 142 0.1603 0.2075 REMARK 3 10 1.8658 - 1.8014 0.99 2529 133 0.1674 0.2367 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.150 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.170 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.31 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6TCH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 06-NOV-19. REMARK 100 THE DEPOSITION ID IS D_1292105203. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-OCT-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : SEALED TUBE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-003 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.542 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 200K REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS REMARK 200 DATA SCALING SOFTWARE : AIMLESS, DIALS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27313 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 34.082 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.100 REMARK 200 R MERGE (I) : 0.06900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.83 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.25800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 4JC3 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.06 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.74 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.095 M NA-HEPES PH 7.5 26.6% (V/V) REMARK 280 PEG400 0.19 M CA CHLORIDE 5% (V/V) GLYCEROL, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 31.37900 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 31.37900 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 41.23750 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 56.14100 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 41.23750 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 56.14100 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 31.37900 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 41.23750 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 56.14100 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 31.37900 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 41.23750 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 56.14100 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6300 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23300 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -78.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 NH2 A -1 REMARK 465 DLY A 0 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN B 67 CD OE1 NE2 REMARK 470 LYS B 68 CD CE NZ REMARK 470 GLU B 71 CG CD OE1 OE2 REMARK 470 GLU B 72 CG CD OE1 OE2 REMARK 470 SER B 74 OG REMARK 470 LYS B 77 CG CD CE NZ REMARK 470 ASP B 138 CG OD1 OD2 REMARK 470 LYS B 160 CE NZ REMARK 470 LYS B 214 CD CE NZ REMARK 470 NVA A 1 CG CD REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE2 GLU B 110 HH TYR B 213 8555 1.59 REMARK 500 OE2 GLU B 110 OH TYR B 213 8555 1.82 REMARK 500 OE2 GLU B 110 OH TYR B 213 8555 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 NVA A 1 C PPN A 2 N 0.146 REMARK 500 KCJ A 3 C SEP A 4 N 0.142 REMARK 500 BAL A 7 C PPN A 8 N 0.159 REMARK 500 PPN A 8 C LYS A 9 N 0.145 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 B3S A 6 CA - C - N ANGL. DEV. = 27.6 DEGREES REMARK 500 BAL A 7 C - N - CA ANGL. DEV. = 41.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG B 18 76.96 -104.53 REMARK 500 ARG B 18 76.96 -105.04 REMARK 500 HIS B 106 36.50 -144.87 REMARK 500 B3S A 6 -39.27 -116.24 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 735 DISTANCE = 6.37 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 302 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 2 OE1 REMARK 620 2 GLU B 2 OE1 0.0 REMARK 620 3 HOH B 424 O 78.8 78.8 REMARK 620 4 HOH B 424 O 84.8 84.8 145.7 REMARK 620 5 HOH B 620 O 91.5 91.5 127.2 82.7 REMARK 620 6 HOH B 620 O 148.8 148.8 76.4 105.6 118.7 REMARK 620 7 HOH B 705 O 131.3 131.3 77.1 134.3 71.3 60.0 REMARK 620 8 HOH B 705 O 147.5 147.5 132.3 72.4 63.5 62.2 62.6 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 303 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 35 OE1 REMARK 620 2 GLU B 35 OE2 52.3 REMARK 620 3 GLU B 110 O 83.0 84.6 REMARK 620 4 GLU B 110 O 83.0 84.5 0.2 REMARK 620 5 GLU B 188 OE2 86.3 121.8 47.1 47.3 REMARK 620 6 HOH B 562 O 83.6 121.9 50.4 50.6 4.4 REMARK 620 7 HOH B 569 O 83.5 119.6 46.8 46.9 2.8 3.6 REMARK 620 8 HOH B 601 O 82.1 120.3 49.7 49.9 5.2 1.7 3.4 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 301 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER B 37 OG REMARK 620 2 HOH B 696 O 48.5 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 304 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 75 OE1 REMARK 620 2 GLU B 161 O 74.0 REMARK 620 3 HOH B 554 O 91.0 160.2 REMARK 620 4 HOH B 573 O 95.3 21.4 163.2 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residues NVA A 1 and PPN A 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residues PPN A 2 and KCJ A 3 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residues KCJ A 3 and SEP A 4 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residues SEP A 4 and PPN A 5 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residues PPN A 5 and B3S A 6 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residues B3S A 6 and BAL A 7 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residues BAL A 7 and PPN A 8 DBREF 6TCH B 1 231 UNP P31947 1433S_HUMAN 1 231 DBREF 6TCH A -1 10 PDB 6TCH 6TCH -1 10 SEQADV 6TCH GLY B -4 UNP P31947 EXPRESSION TAG SEQADV 6TCH ALA B -3 UNP P31947 EXPRESSION TAG SEQADV 6TCH MET B -2 UNP P31947 EXPRESSION TAG SEQADV 6TCH GLY B -1 UNP P31947 EXPRESSION TAG SEQADV 6TCH SER B 0 UNP P31947 EXPRESSION TAG SEQRES 1 B 236 GLY ALA MET GLY SER MET GLU ARG ALA SER LEU ILE GLN SEQRES 2 B 236 LYS ALA LYS LEU ALA GLU GLN ALA GLU ARG TYR GLU ASP SEQRES 3 B 236 MET ALA ALA PHE MET LYS GLY ALA VAL GLU LYS GLY GLU SEQRES 4 B 236 GLU LEU SER CYS GLU GLU ARG ASN LEU LEU SER VAL ALA SEQRES 5 B 236 TYR LYS ASN VAL VAL GLY GLY GLN ARG ALA ALA TRP ARG SEQRES 6 B 236 VAL LEU SER SER ILE GLU GLN LYS SER ASN GLU GLU GLY SEQRES 7 B 236 SER GLU GLU LYS GLY PRO GLU VAL ARG GLU TYR ARG GLU SEQRES 8 B 236 LYS VAL GLU THR GLU LEU GLN GLY VAL CYS ASP THR VAL SEQRES 9 B 236 LEU GLY LEU LEU ASP SER HIS LEU ILE LYS GLU ALA GLY SEQRES 10 B 236 ASP ALA GLU SER ARG VAL PHE TYR LEU LYS MET LYS GLY SEQRES 11 B 236 ASP TYR TYR ARG TYR LEU ALA GLU VAL ALA THR GLY ASP SEQRES 12 B 236 ASP LYS LYS ARG ILE ILE ASP SER ALA ARG SER ALA TYR SEQRES 13 B 236 GLN GLU ALA MET ASP ILE SER LYS LYS GLU MET PRO PRO SEQRES 14 B 236 THR ASN PRO ILE ARG LEU GLY LEU ALA LEU ASN PHE SER SEQRES 15 B 236 VAL PHE HIS TYR GLU ILE ALA ASN SER PRO GLU GLU ALA SEQRES 16 B 236 ILE SER LEU ALA LYS THR THR PHE ASP GLU ALA MET ALA SEQRES 17 B 236 ASP LEU HIS THR LEU SER GLU ASP SER TYR LYS ASP SER SEQRES 18 B 236 THR LEU ILE MET GLN LEU LEU ARG ASP ASN LEU THR LEU SEQRES 19 B 236 TRP THR SEQRES 1 A 12 NH2 DLY NVA PPN KCJ SEP PPN B3S BAL PPN LYS NH2 HET NVA A 1 7 HET PPN A 2 22 HET KCJ A 3 15 HET SEP A 4 14 HET PPN A 5 22 HET B3S A 6 14 HET BAL A 7 10 HET PPN A 8 22 HET NH2 A 10 3 HET MG B 301 1 HET MG B 302 1 HET MG B 303 1 HET MG B 304 1 HET CL B 305 1 HETNAM NVA NORVALINE HETNAM PPN PARA-NITROPHENYLALANINE HETNAM KCJ 3-(1,3-THIAZOL-4-YL)-L-ALANINE HETNAM SEP PHOSPHOSERINE HETNAM B3S (3R)-3-AMINO-4-HYDROXYBUTANOIC ACID HETNAM BAL BETA-ALANINE HETNAM NH2 AMINO GROUP HETNAM MG MAGNESIUM ION HETNAM CL CHLORIDE ION HETSYN SEP PHOSPHONOSERINE FORMUL 2 NVA C5 H11 N O2 FORMUL 2 PPN 3(C9 H10 N2 O4) FORMUL 2 KCJ C6 H8 N2 O2 S FORMUL 2 SEP C3 H8 N O6 P FORMUL 2 B3S C4 H9 N O3 FORMUL 2 BAL C3 H7 N O2 FORMUL 2 NH2 H2 N FORMUL 3 MG 4(MG 2+) FORMUL 7 CL CL 1- FORMUL 8 HOH *351(H2 O) HELIX 1 AA1 GLU B 2 ALA B 16 1 15 HELIX 2 AA2 ARG B 18 LYS B 32 1 15 HELIX 3 AA3 SER B 37 ASN B 70 1 34 HELIX 4 AA4 PRO B 79 SER B 105 1 27 HELIX 5 AA5 HIS B 106 ALA B 111 1 6 HELIX 6 AA6 ASP B 113 ALA B 135 1 23 HELIX 7 AA7 ASP B 139 MET B 162 1 24 HELIX 8 AA8 ASN B 166 ILE B 183 1 18 HELIX 9 AA9 SER B 186 ALA B 203 1 18 HELIX 10 AB1 ASP B 204 LEU B 208 5 5 HELIX 11 AB2 SER B 209 THR B 231 1 23 LINK C NVA A 1 N PPN A 2 1555 1555 1.48 LINK C PPN A 2 N KCJ A 3 1555 1555 1.46 LINK C KCJ A 3 N SEP A 4 1555 1555 1.48 LINK C SEP A 4 N PPN A 5 1555 1555 1.45 LINK C PPN A 5 N B3S A 6 1555 1555 1.44 LINK C B3S A 6 N BAL A 7 1555 1555 1.47 LINK C BAL A 7 N PPN A 8 1555 1555 1.50 LINK C PPN A 8 N LYS A 9 1555 1555 1.48 LINK C LYS A 9 N NH2 A 10 1555 1555 1.46 LINK OE1 GLU B 2 MG MG B 302 1555 1555 2.20 LINK OE1 GLU B 2 MG MG B 302 1555 3654 2.63 LINK OE1 GLU B 35 MG MG B 303 1555 6554 2.62 LINK OE2 GLU B 35 MG MG B 303 1555 6554 2.26 LINK OG SER B 37 MG MG B 301 1555 6554 2.87 LINK OE1 GLU B 75 MG MG B 304 1555 1555 2.39 LINK O AGLU B 110 MG MG B 303 1555 6554 2.28 LINK O BGLU B 110 MG MG B 303 1555 6554 2.28 LINK O GLU B 161 MG MG B 304 1555 7555 2.27 LINK OE2 GLU B 188 MG MG B 303 1555 1555 2.34 LINK MG MG B 301 O HOH B 696 1555 1555 2.85 LINK MG MG B 302 O HOH B 424 1555 1555 2.47 LINK MG MG B 302 O HOH B 424 1555 3654 2.59 LINK MG MG B 302 O HOH B 620 1555 1555 2.19 LINK MG MG B 302 O HOH B 620 1555 3654 2.65 LINK MG MG B 302 O HOH B 705 1555 1555 2.49 LINK MG MG B 302 O HOH B 705 1555 3654 2.65 LINK MG MG B 303 O HOH B 562 1555 6555 2.21 LINK MG MG B 303 O HOH B 569 1555 1555 2.26 LINK MG MG B 303 O HOH B 601 1555 6555 2.43 LINK MG MG B 304 O HOH B 554 1555 7545 2.58 LINK MG MG B 304 O HOH B 573 1555 1555 2.11 CISPEP 1 SER B 105 HIS B 106 0 8.42 SITE 1 AC1 3 SER B 37 GLU B 39 HOH B 696 SITE 1 AC2 4 GLU B 2 HOH B 424 HOH B 620 HOH B 705 SITE 1 AC3 6 GLU B 35 GLU B 110 GLU B 188 HOH B 562 SITE 2 AC3 6 HOH B 569 HOH B 601 SITE 1 AC4 4 GLU B 75 GLU B 161 HOH B 554 HOH B 573 SITE 1 AC5 2 LYS B 9 HOH B 684 SITE 1 AC6 8 KCJ A 3 SEP A 4 HOH A 109 ARG B 56 SITE 2 AC6 8 ALA B 57 ARG B 60 HOH B 466 HOH B 539 SITE 1 AC7 13 NVA A 1 SEP A 4 HOH A 105 HOH A 109 SITE 2 AC7 13 ARG B 56 ALA B 57 ARG B 60 LEU B 174 SITE 3 AC7 13 VAL B 178 GLU B 182 ASN B 226 LEU B 229 SITE 4 AC7 13 HOH B 539 SITE 1 AC8 18 NVA A 1 PPN A 2 PPN A 5 HOH A 101 SITE 2 AC8 18 HOH A 104 HOH A 105 HOH A 106 HOH A 108 SITE 3 AC8 18 HOH A 109 ARG B 56 ARG B 129 TYR B 130 SITE 4 AC8 18 LEU B 174 ASN B 175 VAL B 178 GLU B 182 SITE 5 AC8 18 ASN B 226 LEU B 229 SITE 1 AC9 19 PPN A 2 KCJ A 3 B3S A 6 BAL A 7 SITE 2 AC9 19 PPN A 8 HOH A 101 HOH A 104 HOH A 105 SITE 3 AC9 19 HOH A 106 HOH A 108 HOH A 109 ARG B 56 SITE 4 AC9 19 LYS B 122 ARG B 129 TYR B 130 LEU B 174 SITE 5 AC9 19 ASN B 175 ILE B 219 LEU B 222 SITE 1 AD1 13 SEP A 4 BAL A 7 PPN A 8 HOH A 101 SITE 2 AD1 13 HOH A 102 HOH A 103 HOH A 110 SER B 45 SITE 3 AD1 13 LYS B 122 LEU B 174 ASN B 175 ILE B 219 SITE 4 AD1 13 LEU B 222 SITE 1 AD2 9 PPN A 5 PPN A 8 HOH A 101 HOH A 102 SITE 2 AD2 9 HOH A 103 HOH A 110 ASN B 42 SER B 45 SITE 3 AD2 9 LYS B 122 SITE 1 AD3 11 PPN A 5 B3S A 6 LYS A 9 NH2 A 10 SITE 2 AD3 11 HOH A 103 ASN B 42 SER B 45 PHE B 119 SITE 3 AD3 11 LYS B 122 PRO B 167 GLY B 171 CRYST1 82.475 112.282 62.758 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012125 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008906 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015934 0.00000