HEADER ANTIMICROBIAL PROTEIN 07-NOV-19 6TD1
TITLE CRYSTAL STRUCTURE OF VNRX-5133 (TANIBORBACTAM) BOUND TO KPC-2
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: CARBAPENEM-HYDROLYZING BETA-LACTAMASE KPC;
COMPND 3 CHAIN: A;
COMPND 4 SYNONYM: CARBAPENEM-HYDROLYZING BETA-LACTAMASE KPC-1;
COMPND 5 EC: 3.5.2.6;
COMPND 6 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: KLEBSIELLA PNEUMONIAE;
SOURCE 3 ORGANISM_TAXID: 573;
SOURCE 4 GENE: BLA, KPC, KPC1;
SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3);
SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008
KEYWDS INHIBITOR, BORONATE, BETA-LACTAMASE, ANTIMICROBIAL PROTEIN
EXPDTA X-RAY DIFFRACTION
AUTHOR C.L.TOOKE,P.HINCHLIFFE,J.SPENCER
REVDAT 5 23-OCT-24 6TD1 1 REMARK
REVDAT 4 24-JAN-24 6TD1 1 REMARK
REVDAT 3 03-FEB-21 6TD1 1 JRNL
REVDAT 2 25-MAR-20 6TD1 1 JRNL
REVDAT 1 22-JAN-20 6TD1 0
JRNL AUTH C.L.TOOKE,P.HINCHLIFFE,A.KRAJNC,A.J.MULHOLLAND,J.BREM,
JRNL AUTH 2 C.J.SCHOFIELD,J.SPENCER
JRNL TITL CYCLIC BORONATES AS VERSATILE SCAFFOLDS FOR KPC-2
JRNL TITL 2 BETA-LACTAMASE INHIBITION.
JRNL REF RSC MED CHEM V. 11 491 2020
JRNL REFN ESSN 2632-8682
JRNL PMID 33479650
JRNL DOI 10.1039/C9MD00557A
REMARK 2
REMARK 2 RESOLUTION. 1.20 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : PHENIX 1.15.2_3472
REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN
REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE,
REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER,
REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY,
REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON,
REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI,
REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT
REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART
REMARK 3
REMARK 3 REFINEMENT TARGET : NULL
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.20
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.12
REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360
REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0
REMARK 3 NUMBER OF REFLECTIONS : 85424
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 R VALUE (WORKING + TEST SET) : 0.137
REMARK 3 R VALUE (WORKING SET) : 0.136
REMARK 3 FREE R VALUE : 0.152
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.970
REMARK 3 FREE R VALUE TEST SET COUNT : 4249
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS).
REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE
REMARK 3 1 41.1200 - 3.7300 1.00 2921 157 0.1382 0.1570
REMARK 3 2 3.7300 - 2.9600 1.00 2770 161 0.1189 0.1474
REMARK 3 3 2.9600 - 2.5900 1.00 2733 183 0.1139 0.1330
REMARK 3 4 2.5900 - 2.3500 1.00 2744 148 0.1135 0.1210
REMARK 3 5 2.3500 - 2.1800 1.00 2732 150 0.1150 0.1259
REMARK 3 6 2.1800 - 2.0500 1.00 2744 124 0.1128 0.1432
REMARK 3 7 2.0500 - 1.9500 1.00 2726 125 0.1166 0.1381
REMARK 3 8 1.9500 - 1.8600 1.00 2721 151 0.1215 0.1432
REMARK 3 9 1.8600 - 1.7900 1.00 2695 131 0.1221 0.1462
REMARK 3 10 1.7900 - 1.7300 1.00 2712 146 0.1210 0.1365
REMARK 3 11 1.7300 - 1.6800 1.00 2692 151 0.1161 0.1544
REMARK 3 12 1.6800 - 1.6300 1.00 2699 149 0.1196 0.1377
REMARK 3 13 1.6300 - 1.5900 1.00 2703 127 0.1184 0.1289
REMARK 3 14 1.5900 - 1.5500 1.00 2699 127 0.1252 0.1500
REMARK 3 15 1.5500 - 1.5100 1.00 2684 142 0.1243 0.1340
REMARK 3 16 1.5100 - 1.4800 1.00 2676 149 0.1318 0.1246
REMARK 3 17 1.4800 - 1.4500 1.00 2648 163 0.1348 0.1422
REMARK 3 18 1.4500 - 1.4200 1.00 2693 164 0.1537 0.1621
REMARK 3 19 1.4200 - 1.4000 1.00 2647 137 0.1660 0.1679
REMARK 3 20 1.4000 - 1.3700 1.00 2712 129 0.1827 0.1872
REMARK 3 21 1.3700 - 1.3500 1.00 2669 146 0.1986 0.2072
REMARK 3 22 1.3500 - 1.3300 1.00 2670 141 0.1972 0.2055
REMARK 3 23 1.3300 - 1.3100 1.00 2708 125 0.1976 0.2049
REMARK 3 24 1.3100 - 1.2900 1.00 2693 113 0.2037 0.2096
REMARK 3 25 1.2900 - 1.2800 1.00 2670 134 0.2116 0.1913
REMARK 3 26 1.2800 - 1.2600 1.00 2714 137 0.2292 0.2453
REMARK 3 27 1.2600 - 1.2400 1.00 2697 114 0.2509 0.2532
REMARK 3 28 1.2400 - 1.2300 1.00 2669 137 0.2665 0.2918
REMARK 3 29 1.2300 - 1.2100 1.00 2651 137 0.3147 0.3241
REMARK 3 30 1.2100 - 1.2000 1.00 2683 151 0.3471 0.3468
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : NULL
REMARK 3 SOLVENT RADIUS : 1.11
REMARK 3 SHRINKAGE RADIUS : 0.90
REMARK 3 K_SOL : NULL
REMARK 3 B_SOL : NULL
REMARK 3
REMARK 3 ERROR ESTIMATES.
REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.123
REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 15.073
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : 11.92
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.27
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : NULL
REMARK 3 B22 (A**2) : NULL
REMARK 3 B33 (A**2) : NULL
REMARK 3 B12 (A**2) : NULL
REMARK 3 B13 (A**2) : NULL
REMARK 3 B23 (A**2) : NULL
REMARK 3
REMARK 3 TWINNING INFORMATION.
REMARK 3 FRACTION: NULL
REMARK 3 OPERATOR: NULL
REMARK 3
REMARK 3 DEVIATIONS FROM IDEAL VALUES.
REMARK 3 RMSD COUNT
REMARK 3 BOND : 0.013 2325
REMARK 3 ANGLE : 1.425 3196
REMARK 3 CHIRALITY : 0.347 354
REMARK 3 PLANARITY : 0.009 423
REMARK 3 DIHEDRAL : 16.758 847
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : NULL
REMARK 3
REMARK 3 NCS DETAILS
REMARK 3 NUMBER OF NCS GROUPS : NULL
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 6TD1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 08-NOV-19.
REMARK 100 THE DEPOSITION ID IS D_1292105209.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 02-MAY-19
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : NULL
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : ALBA
REMARK 200 BEAMLINE : XALOC
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 0.90
REMARK 200 MONOCHROMATOR : NULL
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : PIXEL
REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS
REMARK 200 DATA SCALING SOFTWARE : AIMLESS
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 85505
REMARK 200 RESOLUTION RANGE HIGH (A) : 1.200
REMARK 200 RESOLUTION RANGE LOW (A) : 45.840
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0
REMARK 200 DATA REDUNDANCY : 13.00
REMARK 200 R MERGE (I) : NULL
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 11.4000
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.20
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.22
REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0
REMARK 200 DATA REDUNDANCY IN SHELL : 11.90
REMARK 200 R MERGE FOR SHELL (I) : NULL
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.100
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: PHASER
REMARK 200 STARTING MODEL: 6QW9
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 43.99
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 2.0 M AMMONIUM SULPHATE, 5% ETHANOL,
REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 294.15K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X,-Y,Z
REMARK 290 3555 -X+1/2,Y+1/2,-Z
REMARK 290 4555 X+1/2,-Y+1/2,-Z
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 30.27850
REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.88050
REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 30.27850
REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 39.88050
REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 TOTAL BURIED SURFACE AREA: 460 ANGSTROM**2
REMARK 350 SURFACE AREA OF THE COMPLEX: 11340 ANGSTROM**2
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 375
REMARK 375 SPECIAL POSITION
REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS
REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL
REMARK 375 POSITIONS.
REMARK 375
REMARK 375 ATOM RES CSSEQI
REMARK 375 HOH A 604 LIES ON A SPECIAL POSITION.
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 MET A 4
REMARK 465 GLY A 5
REMARK 465 SER A 6
REMARK 465 SER A 7
REMARK 465 HIS A 8
REMARK 465 HIS A 9
REMARK 465 HIS A 10
REMARK 465 HIS A 11
REMARK 465 HIS A 12
REMARK 465 HIS A 13
REMARK 465 SER A 14
REMARK 465 SER A 15
REMARK 465 GLY A 16
REMARK 465 LEU A 17
REMARK 465 VAL A 18
REMARK 465 PRO A 19
REMARK 465 ARG A 20
REMARK 465 GLY A 21
REMARK 465 SER A 22
REMARK 465 GLN A 295
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT
REMARK 500
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE
REMARK 500 O HOH A 522 O HOH A 557 1.91
REMARK 500 O HOH A 545 O HOH A 782 1.98
REMARK 500 O HOH A 756 O HOH A 836 1.98
REMARK 500 O HOH A 792 O HOH A 809 2.03
REMARK 500 O HOH A 540 O HOH A 725 2.08
REMARK 500 O HOH A 609 O HOH A 725 2.10
REMARK 500 O HOH A 618 O HOH A 784 2.13
REMARK 500 O HOH A 595 O HOH A 725 2.15
REMARK 500 O HOH A 790 O HOH A 851 2.16
REMARK 500 O HOH A 705 O HOH A 711 2.16
REMARK 500 O HOH A 501 O HOH A 750 2.18
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS
REMARK 500
REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC
REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15
REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A
REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375
REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE
REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS.
REMARK 500
REMARK 500 DISTANCE CUTOFF:
REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS
REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE
REMARK 500 O HOH A 529 O HOH A 615 4556 2.16
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 CYS A 69 -146.30 52.45
REMARK 500 TRP A 105 68.10 66.66
REMARK 500 ARG A 220 -125.31 -114.13
REMARK 500
REMARK 500 REMARK: NULL
REMARK 525
REMARK 525 SOLVENT
REMARK 525
REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT
REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST
REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT
REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE
REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER;
REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE
REMARK 525 NUMBER; I=INSERTION CODE):
REMARK 525
REMARK 525 M RES CSSEQI
REMARK 525 HOH A 886 DISTANCE = 6.13 ANGSTROMS
REMARK 525 HOH A 887 DISTANCE = 6.47 ANGSTROMS
REMARK 525 HOH A 888 DISTANCE = 7.53 ANGSTROMS
REMARK 610
REMARK 610 MISSING HETEROATOM
REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;
REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 610 I=INSERTION CODE):
REMARK 610 M RES C SSEQI
REMARK 610 KJK A 402
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 401
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue KJK A 402
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC3
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 403
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC4
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 404
DBREF 6TD1 A 25 295 UNP Q9F663 BLKPC_KLEPN 25 293
SEQADV 6TD1 MET A 4 UNP Q9F663 INITIATING METHIONINE
SEQADV 6TD1 GLY A 5 UNP Q9F663 EXPRESSION TAG
SEQADV 6TD1 SER A 6 UNP Q9F663 EXPRESSION TAG
SEQADV 6TD1 SER A 7 UNP Q9F663 EXPRESSION TAG
SEQADV 6TD1 HIS A 8 UNP Q9F663 EXPRESSION TAG
SEQADV 6TD1 HIS A 9 UNP Q9F663 EXPRESSION TAG
SEQADV 6TD1 HIS A 10 UNP Q9F663 EXPRESSION TAG
SEQADV 6TD1 HIS A 11 UNP Q9F663 EXPRESSION TAG
SEQADV 6TD1 HIS A 12 UNP Q9F663 EXPRESSION TAG
SEQADV 6TD1 HIS A 13 UNP Q9F663 EXPRESSION TAG
SEQADV 6TD1 SER A 14 UNP Q9F663 EXPRESSION TAG
SEQADV 6TD1 SER A 15 UNP Q9F663 EXPRESSION TAG
SEQADV 6TD1 GLY A 16 UNP Q9F663 EXPRESSION TAG
SEQADV 6TD1 LEU A 17 UNP Q9F663 EXPRESSION TAG
SEQADV 6TD1 VAL A 18 UNP Q9F663 EXPRESSION TAG
SEQADV 6TD1 PRO A 19 UNP Q9F663 EXPRESSION TAG
SEQADV 6TD1 ARG A 20 UNP Q9F663 EXPRESSION TAG
SEQADV 6TD1 GLY A 21 UNP Q9F663 EXPRESSION TAG
SEQADV 6TD1 SER A 22 UNP Q9F663 EXPRESSION TAG
SEQADV 6TD1 HIS A 23 UNP Q9F663 EXPRESSION TAG
SEQADV 6TD1 MET A 24 UNP Q9F663 EXPRESSION TAG
SEQRES 1 A 290 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY
SEQRES 2 A 290 LEU VAL PRO ARG GLY SER HIS MET LEU THR ASN LEU VAL
SEQRES 3 A 290 ALA GLU PRO PHE ALA LYS LEU GLU GLN ASP PHE GLY GLY
SEQRES 4 A 290 SER ILE GLY VAL TYR ALA MET ASP THR GLY SER GLY ALA
SEQRES 5 A 290 THR VAL SER TYR ARG ALA GLU GLU ARG PHE PRO LEU CYS
SEQRES 6 A 290 SER SER PHE LYS GLY PHE LEU ALA ALA ALA VAL LEU ALA
SEQRES 7 A 290 ARG SER GLN GLN GLN ALA GLY LEU LEU ASP THR PRO ILE
SEQRES 8 A 290 ARG TYR GLY LYS ASN ALA LEU VAL PRO TRP SER PRO ILE
SEQRES 9 A 290 SER GLU LYS TYR LEU THR THR GLY MET THR VAL ALA GLU
SEQRES 10 A 290 LEU SER ALA ALA ALA VAL GLN TYR SER ASP ASN ALA ALA
SEQRES 11 A 290 ALA ASN LEU LEU LEU LYS GLU LEU GLY GLY PRO ALA GLY
SEQRES 12 A 290 LEU THR ALA PHE MET ARG SER ILE GLY ASP THR THR PHE
SEQRES 13 A 290 ARG LEU ASP ARG TRP GLU LEU GLU LEU ASN SER ALA ILE
SEQRES 14 A 290 PRO GLY ASP ALA ARG ASP THR SER SER PRO ARG ALA VAL
SEQRES 15 A 290 THR GLU SER LEU GLN LYS LEU THR LEU GLY SER ALA LEU
SEQRES 16 A 290 ALA ALA PRO GLN ARG GLN GLN PHE VAL ASP TRP LEU LYS
SEQRES 17 A 290 GLY ASN THR THR GLY ASN HIS ARG ILE ARG ALA ALA VAL
SEQRES 18 A 290 PRO ALA ASP TRP ALA VAL GLY ASP LYS THR GLY THR CYS
SEQRES 19 A 290 GLY VAL TYR GLY THR ALA ASN ASP TYR ALA VAL VAL TRP
SEQRES 20 A 290 PRO THR GLY ARG ALA PRO ILE VAL LEU ALA VAL TYR THR
SEQRES 21 A 290 ARG ALA PRO ASN LYS ASP ASP LYS HIS SER GLU ALA VAL
SEQRES 22 A 290 ILE ALA ALA ALA ALA ARG LEU ALA LEU GLU GLY LEU GLY
SEQRES 23 A 290 VAL ASN GLY GLN
HET GOL A 401 14
HET KJK A 402 92
HET SO4 A 403 5
HET SO4 A 404 5
HETNAM GOL GLYCEROL
HETNAM KJK (3~{R})-3-[2-[4-(2-AZANYLETHYLAMINO)
HETNAM 2 KJK CYCLOHEXYL]ETHANOYLAMINO]-2-OXIDANYL-3,4-DIHYDRO-1,2-
HETNAM 3 KJK BENZOXABORININE-8-CARBOXYLIC ACID
HETNAM SO4 SULFATE ION
HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL
FORMUL 2 GOL C3 H8 O3
FORMUL 3 KJK C19 H28 B N3 O5
FORMUL 4 SO4 2(O4 S 2-)
FORMUL 6 HOH *388(H2 O)
HELIX 1 AA1 PRO A 32 GLY A 41 1 10
HELIX 2 AA2 SER A 71 GLN A 85 1 15
HELIX 3 AA3 GLY A 98 LEU A 102 5 5
HELIX 4 AA4 ILE A 108 LEU A 113 5 6
HELIX 5 AA5 VAL A 119 SER A 130 1 12
HELIX 6 AA6 ASP A 131 LEU A 142 1 12
HELIX 7 AA7 GLY A 143 ILE A 155 1 13
HELIX 8 AA8 LEU A 167 SER A 171 5 5
HELIX 9 AA9 SER A 182 LEU A 195 1 14
HELIX 10 AB1 ALA A 200 GLY A 213 1 14
HELIX 11 AB2 ARG A 220 VAL A 225 5 6
HELIX 12 AB3 SER A 275 LEU A 290 1 16
SHEET 1 AA1 5 THR A 56 TYR A 60 0
SHEET 2 AA1 5 SER A 43 ASP A 50 -1 N VAL A 46 O TYR A 60
SHEET 3 AA1 5 ILE A 259 ARG A 266 -1 O VAL A 260 N MET A 49
SHEET 4 AA1 5 ALA A 244 TRP A 251 -1 N VAL A 250 O ILE A 259
SHEET 5 AA1 5 ALA A 230 THR A 237 -1 N ALA A 230 O TRP A 251
SHEET 1 AA2 2 PHE A 66 PRO A 67 0
SHEET 2 AA2 2 THR A 180 SER A 181 -1 O SER A 181 N PHE A 66
SHEET 1 AA3 2 PRO A 94 ILE A 95 0
SHEET 2 AA3 2 MET A 117 THR A 118 -1 O MET A 117 N ILE A 95
SSBOND 1 CYS A 69 CYS A 238 1555 1555 2.07
LINK OG SER A 70 B07AKJK A 402 1555 1555 1.57
LINK OG SER A 70 B07BKJK A 402 1555 1555 1.55
CISPEP 1 GLU A 166 LEU A 167 0 3.11
SITE 1 AC1 5 GLN A 205 LYS A 212 TRP A 251 HOH A 574
SITE 2 AC1 5 HOH A 629
SITE 1 AC2 13 CYS A 69 SER A 70 TRP A 105 SER A 130
SITE 2 AC2 13 ASN A 132 LEU A 167 ARG A 220 THR A 235
SITE 3 AC2 13 GLY A 236 THR A 237 HOH A 512 HOH A 573
SITE 4 AC2 13 HOH A 607
SITE 1 AC3 7 SER A 275 GLU A 276 ALA A 277 HOH A 561
SITE 2 AC3 7 HOH A 597 HOH A 663 HOH A 674
SITE 1 AC4 3 ARG A 61 GLY A 255 HOH A 526
CRYST1 60.557 79.761 56.021 90.00 90.00 90.00 P 21 21 2 4
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.016513 0.000000 0.000000 0.00000
SCALE2 0.000000 0.012537 0.000000 0.00000
SCALE3 0.000000 0.000000 0.017850 0.00000