data_6TE8 # _entry.id 6TE8 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.330 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 6TE8 WWPDB D_1292104903 EMDB EMD-10476 # loop_ _pdbx_database_related.db_name _pdbx_database_related.details _pdbx_database_related.db_id _pdbx_database_related.content_type EMDB 'Neck of native GTA particle computed with C6 symmetry' EMD-10477 'other EM volume' EMDB 'Virion of native GTA particle' EMD-10443 'other EM volume' EMDB 'Neck of empty GTA particle computed with C6 symmetry' EMD-10542 'other EM volume' EMDB 'Neck of empty GTA particle computed with C12 symmetry' EMD-10541 'other EM volume' PDB 'Virion of native GTA particle' 6TBA unspecified EMDB 'Neck of native GTA particle computed with C12 symmetry' EMD-10476 'associated EM volume' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6TE8 _pdbx_database_status.recvd_initial_deposition_date 2019-11-11 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Bardy, P.' 1 ? 'Fuzik, T.' 2 ? 'Hrebik, D.' 3 ? 'Pantucek, R.' 4 ? 'Beatty, J.T.' 5 ? 'Plevka, P.' 6 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Nat Commun' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2041-1723 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 11 _citation.language ? _citation.page_first 3034 _citation.page_last 3034 _citation.title 'Structure and mechanism of DNA delivery of a gene transfer agent.' _citation.year 2020 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1038/s41467-020-16669-9 _citation.pdbx_database_id_PubMed 32541663 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Bardy, P.' 1 0000-0002-1223-2584 primary 'Fuzik, T.' 2 0000-0002-1190-0210 primary 'Hrebik, D.' 3 ? primary 'Pantucek, R.' 4 0000-0002-3950-675X primary 'Thomas Beatty, J.' 5 0000-0002-1425-0532 primary 'Plevka, P.' 6 0000-0003-4215-3315 # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 6TE8 _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.00 _cell.length_a_esd ? _cell.length_b 1.00 _cell.length_b_esd ? _cell.length_c 1.00 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6TE8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat 'Adaptor protein Rcc01688' 20956.354 1 ? ? ? ? 2 polymer nat 'Phage portal protein, HK97 family' 42589.668 1 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;MMLNEVTAVPGTALPVAEFRDHLRLGTGFADLGAEDAALLSYLRAAIAAIEGRTAKALISRGFRLALTAWRWGDMQTLPI APVATVTALRLVDAAGVETPVAAGWRLVPDMARPRIEALGAMLPMIPTGGRVEIDFTAGFGASWSALPVDLAQAVFLLAA QYYELRHDGAAEGGAMPFGVMALIERWRTVRVLGGRP ; ;MMLNEVTAVPGTALPVAEFRDHLRLGTGFADLGAEDAALLSYLRAAIAAIEGRTAKALISRGFRLALTAWRWGDMQTLPI APVATVTALRLVDAAGVETPVAAGWRLVPDMARPRIEALGAMLPMIPTGGRVEIDFTAGFGASWSALPVDLAQAVFLLAA QYYELRHDGAAEGGAMPFGVMALIERWRTVRVLGGRP ; B ? 2 'polypeptide(L)' no no ;MGLNFFRKAAPEVRTEPVAERKASVTGRIVAMASGAGRPVWGPRDTVSLMRTGFAGNPVGFRSVKLIAEATAAVPLICQD AERRYEIHPVLDLLRRPNAGQGRAELFEALIGQILLSGNGYLEAVCPEPGVPRELHVLRSDRMAVVPGADGWPVGYDYTV GGRKHRFDMTGHPDPICHIKSFHPTDDHYGLSPMQAAAVALDVHNAASAWSKALLDNAARPSGAIIYKGADGQGVLAPEQ YERLIFEMETHHQGARNAGRPMLLEGGLDWKPMGFSPSDMEFHETKAAAAREIALAFGVPPMLIGIPGDATYANYAEANR AFYRLTVLPLLTRVSAALAWWLSGYLGAQIELKPDLDQVPALAVERDQLWARIGAAGFLSNSEKRVLLGLPPT ; ;MGLNFFRKAAPEVRTEPVAERKASVTGRIVAMASGAGRPVWGPRDTVSLMRTGFAGNPVGFRSVKLIAEATAAVPLICQD AERRYEIHPVLDLLRRPNAGQGRAELFEALIGQILLSGNGYLEAVCPEPGVPRELHVLRSDRMAVVPGADGWPVGYDYTV GGRKHRFDMTGHPDPICHIKSFHPTDDHYGLSPMQAAAVALDVHNAASAWSKALLDNAARPSGAIIYKGADGQGVLAPEQ YERLIFEMETHHQGARNAGRPMLLEGGLDWKPMGFSPSDMEFHETKAAAAREIALAFGVPPMLIGIPGDATYANYAEANR AFYRLTVLPLLTRVSAALAWWLSGYLGAQIELKPDLDQVPALAVERDQLWARIGAAGFLSNSEKRVLLGLPPT ; A ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 MET n 1 3 LEU n 1 4 ASN n 1 5 GLU n 1 6 VAL n 1 7 THR n 1 8 ALA n 1 9 VAL n 1 10 PRO n 1 11 GLY n 1 12 THR n 1 13 ALA n 1 14 LEU n 1 15 PRO n 1 16 VAL n 1 17 ALA n 1 18 GLU n 1 19 PHE n 1 20 ARG n 1 21 ASP n 1 22 HIS n 1 23 LEU n 1 24 ARG n 1 25 LEU n 1 26 GLY n 1 27 THR n 1 28 GLY n 1 29 PHE n 1 30 ALA n 1 31 ASP n 1 32 LEU n 1 33 GLY n 1 34 ALA n 1 35 GLU n 1 36 ASP n 1 37 ALA n 1 38 ALA n 1 39 LEU n 1 40 LEU n 1 41 SER n 1 42 TYR n 1 43 LEU n 1 44 ARG n 1 45 ALA n 1 46 ALA n 1 47 ILE n 1 48 ALA n 1 49 ALA n 1 50 ILE n 1 51 GLU n 1 52 GLY n 1 53 ARG n 1 54 THR n 1 55 ALA n 1 56 LYS n 1 57 ALA n 1 58 LEU n 1 59 ILE n 1 60 SER n 1 61 ARG n 1 62 GLY n 1 63 PHE n 1 64 ARG n 1 65 LEU n 1 66 ALA n 1 67 LEU n 1 68 THR n 1 69 ALA n 1 70 TRP n 1 71 ARG n 1 72 TRP n 1 73 GLY n 1 74 ASP n 1 75 MET n 1 76 GLN n 1 77 THR n 1 78 LEU n 1 79 PRO n 1 80 ILE n 1 81 ALA n 1 82 PRO n 1 83 VAL n 1 84 ALA n 1 85 THR n 1 86 VAL n 1 87 THR n 1 88 ALA n 1 89 LEU n 1 90 ARG n 1 91 LEU n 1 92 VAL n 1 93 ASP n 1 94 ALA n 1 95 ALA n 1 96 GLY n 1 97 VAL n 1 98 GLU n 1 99 THR n 1 100 PRO n 1 101 VAL n 1 102 ALA n 1 103 ALA n 1 104 GLY n 1 105 TRP n 1 106 ARG n 1 107 LEU n 1 108 VAL n 1 109 PRO n 1 110 ASP n 1 111 MET n 1 112 ALA n 1 113 ARG n 1 114 PRO n 1 115 ARG n 1 116 ILE n 1 117 GLU n 1 118 ALA n 1 119 LEU n 1 120 GLY n 1 121 ALA n 1 122 MET n 1 123 LEU n 1 124 PRO n 1 125 MET n 1 126 ILE n 1 127 PRO n 1 128 THR n 1 129 GLY n 1 130 GLY n 1 131 ARG n 1 132 VAL n 1 133 GLU n 1 134 ILE n 1 135 ASP n 1 136 PHE n 1 137 THR n 1 138 ALA n 1 139 GLY n 1 140 PHE n 1 141 GLY n 1 142 ALA n 1 143 SER n 1 144 TRP n 1 145 SER n 1 146 ALA n 1 147 LEU n 1 148 PRO n 1 149 VAL n 1 150 ASP n 1 151 LEU n 1 152 ALA n 1 153 GLN n 1 154 ALA n 1 155 VAL n 1 156 PHE n 1 157 LEU n 1 158 LEU n 1 159 ALA n 1 160 ALA n 1 161 GLN n 1 162 TYR n 1 163 TYR n 1 164 GLU n 1 165 LEU n 1 166 ARG n 1 167 HIS n 1 168 ASP n 1 169 GLY n 1 170 ALA n 1 171 ALA n 1 172 GLU n 1 173 GLY n 1 174 GLY n 1 175 ALA n 1 176 MET n 1 177 PRO n 1 178 PHE n 1 179 GLY n 1 180 VAL n 1 181 MET n 1 182 ALA n 1 183 LEU n 1 184 ILE n 1 185 GLU n 1 186 ARG n 1 187 TRP n 1 188 ARG n 1 189 THR n 1 190 VAL n 1 191 ARG n 1 192 VAL n 1 193 LEU n 1 194 GLY n 1 195 GLY n 1 196 ARG n 1 197 PRO n 2 1 MET n 2 2 GLY n 2 3 LEU n 2 4 ASN n 2 5 PHE n 2 6 PHE n 2 7 ARG n 2 8 LYS n 2 9 ALA n 2 10 ALA n 2 11 PRO n 2 12 GLU n 2 13 VAL n 2 14 ARG n 2 15 THR n 2 16 GLU n 2 17 PRO n 2 18 VAL n 2 19 ALA n 2 20 GLU n 2 21 ARG n 2 22 LYS n 2 23 ALA n 2 24 SER n 2 25 VAL n 2 26 THR n 2 27 GLY n 2 28 ARG n 2 29 ILE n 2 30 VAL n 2 31 ALA n 2 32 MET n 2 33 ALA n 2 34 SER n 2 35 GLY n 2 36 ALA n 2 37 GLY n 2 38 ARG n 2 39 PRO n 2 40 VAL n 2 41 TRP n 2 42 GLY n 2 43 PRO n 2 44 ARG n 2 45 ASP n 2 46 THR n 2 47 VAL n 2 48 SER n 2 49 LEU n 2 50 MET n 2 51 ARG n 2 52 THR n 2 53 GLY n 2 54 PHE n 2 55 ALA n 2 56 GLY n 2 57 ASN n 2 58 PRO n 2 59 VAL n 2 60 GLY n 2 61 PHE n 2 62 ARG n 2 63 SER n 2 64 VAL n 2 65 LYS n 2 66 LEU n 2 67 ILE n 2 68 ALA n 2 69 GLU n 2 70 ALA n 2 71 THR n 2 72 ALA n 2 73 ALA n 2 74 VAL n 2 75 PRO n 2 76 LEU n 2 77 ILE n 2 78 CYS n 2 79 GLN n 2 80 ASP n 2 81 ALA n 2 82 GLU n 2 83 ARG n 2 84 ARG n 2 85 TYR n 2 86 GLU n 2 87 ILE n 2 88 HIS n 2 89 PRO n 2 90 VAL n 2 91 LEU n 2 92 ASP n 2 93 LEU n 2 94 LEU n 2 95 ARG n 2 96 ARG n 2 97 PRO n 2 98 ASN n 2 99 ALA n 2 100 GLY n 2 101 GLN n 2 102 GLY n 2 103 ARG n 2 104 ALA n 2 105 GLU n 2 106 LEU n 2 107 PHE n 2 108 GLU n 2 109 ALA n 2 110 LEU n 2 111 ILE n 2 112 GLY n 2 113 GLN n 2 114 ILE n 2 115 LEU n 2 116 LEU n 2 117 SER n 2 118 GLY n 2 119 ASN n 2 120 GLY n 2 121 TYR n 2 122 LEU n 2 123 GLU n 2 124 ALA n 2 125 VAL n 2 126 CYS n 2 127 PRO n 2 128 GLU n 2 129 PRO n 2 130 GLY n 2 131 VAL n 2 132 PRO n 2 133 ARG n 2 134 GLU n 2 135 LEU n 2 136 HIS n 2 137 VAL n 2 138 LEU n 2 139 ARG n 2 140 SER n 2 141 ASP n 2 142 ARG n 2 143 MET n 2 144 ALA n 2 145 VAL n 2 146 VAL n 2 147 PRO n 2 148 GLY n 2 149 ALA n 2 150 ASP n 2 151 GLY n 2 152 TRP n 2 153 PRO n 2 154 VAL n 2 155 GLY n 2 156 TYR n 2 157 ASP n 2 158 TYR n 2 159 THR n 2 160 VAL n 2 161 GLY n 2 162 GLY n 2 163 ARG n 2 164 LYS n 2 165 HIS n 2 166 ARG n 2 167 PHE n 2 168 ASP n 2 169 MET n 2 170 THR n 2 171 GLY n 2 172 HIS n 2 173 PRO n 2 174 ASP n 2 175 PRO n 2 176 ILE n 2 177 CYS n 2 178 HIS n 2 179 ILE n 2 180 LYS n 2 181 SER n 2 182 PHE n 2 183 HIS n 2 184 PRO n 2 185 THR n 2 186 ASP n 2 187 ASP n 2 188 HIS n 2 189 TYR n 2 190 GLY n 2 191 LEU n 2 192 SER n 2 193 PRO n 2 194 MET n 2 195 GLN n 2 196 ALA n 2 197 ALA n 2 198 ALA n 2 199 VAL n 2 200 ALA n 2 201 LEU n 2 202 ASP n 2 203 VAL n 2 204 HIS n 2 205 ASN n 2 206 ALA n 2 207 ALA n 2 208 SER n 2 209 ALA n 2 210 TRP n 2 211 SER n 2 212 LYS n 2 213 ALA n 2 214 LEU n 2 215 LEU n 2 216 ASP n 2 217 ASN n 2 218 ALA n 2 219 ALA n 2 220 ARG n 2 221 PRO n 2 222 SER n 2 223 GLY n 2 224 ALA n 2 225 ILE n 2 226 ILE n 2 227 TYR n 2 228 LYS n 2 229 GLY n 2 230 ALA n 2 231 ASP n 2 232 GLY n 2 233 GLN n 2 234 GLY n 2 235 VAL n 2 236 LEU n 2 237 ALA n 2 238 PRO n 2 239 GLU n 2 240 GLN n 2 241 TYR n 2 242 GLU n 2 243 ARG n 2 244 LEU n 2 245 ILE n 2 246 PHE n 2 247 GLU n 2 248 MET n 2 249 GLU n 2 250 THR n 2 251 HIS n 2 252 HIS n 2 253 GLN n 2 254 GLY n 2 255 ALA n 2 256 ARG n 2 257 ASN n 2 258 ALA n 2 259 GLY n 2 260 ARG n 2 261 PRO n 2 262 MET n 2 263 LEU n 2 264 LEU n 2 265 GLU n 2 266 GLY n 2 267 GLY n 2 268 LEU n 2 269 ASP n 2 270 TRP n 2 271 LYS n 2 272 PRO n 2 273 MET n 2 274 GLY n 2 275 PHE n 2 276 SER n 2 277 PRO n 2 278 SER n 2 279 ASP n 2 280 MET n 2 281 GLU n 2 282 PHE n 2 283 HIS n 2 284 GLU n 2 285 THR n 2 286 LYS n 2 287 ALA n 2 288 ALA n 2 289 ALA n 2 290 ALA n 2 291 ARG n 2 292 GLU n 2 293 ILE n 2 294 ALA n 2 295 LEU n 2 296 ALA n 2 297 PHE n 2 298 GLY n 2 299 VAL n 2 300 PRO n 2 301 PRO n 2 302 MET n 2 303 LEU n 2 304 ILE n 2 305 GLY n 2 306 ILE n 2 307 PRO n 2 308 GLY n 2 309 ASP n 2 310 ALA n 2 311 THR n 2 312 TYR n 2 313 ALA n 2 314 ASN n 2 315 TYR n 2 316 ALA n 2 317 GLU n 2 318 ALA n 2 319 ASN n 2 320 ARG n 2 321 ALA n 2 322 PHE n 2 323 TYR n 2 324 ARG n 2 325 LEU n 2 326 THR n 2 327 VAL n 2 328 LEU n 2 329 PRO n 2 330 LEU n 2 331 LEU n 2 332 THR n 2 333 ARG n 2 334 VAL n 2 335 SER n 2 336 ALA n 2 337 ALA n 2 338 LEU n 2 339 ALA n 2 340 TRP n 2 341 TRP n 2 342 LEU n 2 343 SER n 2 344 GLY n 2 345 TYR n 2 346 LEU n 2 347 GLY n 2 348 ALA n 2 349 GLN n 2 350 ILE n 2 351 GLU n 2 352 LEU n 2 353 LYS n 2 354 PRO n 2 355 ASP n 2 356 LEU n 2 357 ASP n 2 358 GLN n 2 359 VAL n 2 360 PRO n 2 361 ALA n 2 362 LEU n 2 363 ALA n 2 364 VAL n 2 365 GLU n 2 366 ARG n 2 367 ASP n 2 368 GLN n 2 369 LEU n 2 370 TRP n 2 371 ALA n 2 372 ARG n 2 373 ILE n 2 374 GLY n 2 375 ALA n 2 376 ALA n 2 377 GLY n 2 378 PHE n 2 379 LEU n 2 380 SER n 2 381 ASN n 2 382 SER n 2 383 GLU n 2 384 LYS n 2 385 ARG n 2 386 VAL n 2 387 LEU n 2 388 LEU n 2 389 GLY n 2 390 LEU n 2 391 PRO n 2 392 PRO n 2 393 THR n # loop_ _entity_src_nat.entity_id _entity_src_nat.pdbx_src_id _entity_src_nat.pdbx_alt_source_flag _entity_src_nat.pdbx_beg_seq_num _entity_src_nat.pdbx_end_seq_num _entity_src_nat.common_name _entity_src_nat.pdbx_organism_scientific _entity_src_nat.pdbx_ncbi_taxonomy_id _entity_src_nat.genus _entity_src_nat.species _entity_src_nat.strain _entity_src_nat.tissue _entity_src_nat.tissue_fraction _entity_src_nat.pdbx_secretion _entity_src_nat.pdbx_fragment _entity_src_nat.pdbx_variant _entity_src_nat.pdbx_cell_line _entity_src_nat.pdbx_atcc _entity_src_nat.pdbx_cellular_location _entity_src_nat.pdbx_organ _entity_src_nat.pdbx_organelle _entity_src_nat.pdbx_cell _entity_src_nat.pdbx_plasmid_name _entity_src_nat.pdbx_plasmid_details _entity_src_nat.details 1 1 sample 1 197 ? 'Rhodobacter capsulatus' 1415160 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 2 1 sample 1 393 ? 'Rhodobacter capsulatus' 1415160 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 UNP D5ATZ4_RHOCB D5ATZ4 ? 1 ;MMLNEVTAVPGTALPVAEFRDHLRLGTGFADLGAEDAALLSYLRAAIAAIEGRTAKALISRGFRLALTAWRWGDMQTLPI APVATVTALRLVDAAGVETPVAAGWRLVPDMARPRIEALGAMLPMIPTGGRVEIDFTAGFGASWSALPVDLAQAVFLLAA QYYELRHDGAAEGGAMPFGVMALIERWRTVRVLGGRP ; 1 2 UNP Q9RNH1_RHOCA Q9RNH1 ? 2 ;MGLNFFRKAAPEVRTEPVAERKASVTGRIVAMASGAGRPVWGPRDTVSLMRTGFAGNPVGFRSVKLIAEATAAVPLICQD AERRYEIHPVLDLLRRPNAGQGRAELFEALIGQILLSGNGYLEAVCPEPGVPRELHVLRSDRMAVVPGADGWPVGYDYTV GGRKHRFDMTGHPDPICHIKSFHPTDDHYGLSPMQAAAVALDVHNAASAWSKALLDNAARPSGAIIYKGADGQGVLAPEQ YERLIFEMETHHQGARNAGRPMLLEGGLDWKPMGFSPSDMEFHETKAAAAREIALAFGVPPMLIGIPGDATYANYAEANR AFYRLTVLPLLTRVSAALAWWLSGYLGAQIELKPDLDQVPALAVERDQLWARIGAAGFLSNSEKRVLLGLPPT ; 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 6TE8 B 1 ? 197 ? D5ATZ4 1 ? 197 ? 1 197 2 2 6TE8 A 1 ? 393 ? Q9RNH1 1 ? 393 ? 1 393 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6TE8 _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _refine.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine.entry_id 6TE8 _refine.pdbx_diffrn_id ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low ? _refine.ls_d_res_high . _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'ELECTRON MICROSCOPY' ? 0.004 ? 50340 ? f_bond_d ? ? 'ELECTRON MICROSCOPY' ? 0.631 ? 68556 ? f_angle_d ? ? 'ELECTRON MICROSCOPY' ? 16.994 ? 29904 ? f_dihedral_angle_d ? ? 'ELECTRON MICROSCOPY' ? 0.043 ? 7632 ? f_chiral_restr ? ? 'ELECTRON MICROSCOPY' ? 0.005 ? 8940 ? f_plane_restr ? ? # _struct.entry_id 6TE8 _struct.title 'Neck of native GTA particle computed with C12 symmetry' _struct.pdbx_descriptor 'Adaptor protein Rcc01688, Portal protein Rcc01684' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6TE8 _struct_keywords.text ;"portal", "gene transfer agent", "bacteriophage", "adaptor", VIRUS ; _struct_keywords.pdbx_keywords VIRUS # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 PRO A 15 ? LEU A 23 ? PRO B 15 LEU B 23 1 ? 9 HELX_P HELX_P2 AA2 ALA A 37 ? THR A 54 ? ALA B 37 THR B 54 1 ? 18 HELX_P HELX_P3 AA3 SER A 143 ? LEU A 147 ? SER B 143 LEU B 147 5 ? 5 HELX_P HELX_P4 AA4 PRO A 148 ? LEU A 165 ? PRO B 148 LEU B 165 1 ? 18 HELX_P HELX_P5 AA5 GLY A 179 ? GLU A 185 ? GLY B 179 GLU B 185 1 ? 7 HELX_P HELX_P6 AA6 THR B 26 ? SER B 34 ? THR A 26 SER A 34 1 ? 9 HELX_P HELX_P7 AA7 VAL B 47 ? PHE B 54 ? VAL A 47 PHE A 54 1 ? 8 HELX_P HELX_P8 AA8 ASN B 57 ? ALA B 73 ? ASN A 57 ALA A 73 1 ? 17 HELX_P HELX_P9 AA9 LEU B 91 ? ARG B 96 ? LEU A 91 ARG A 96 1 ? 6 HELX_P HELX_P10 AB1 GLY B 102 ? SER B 117 ? GLY A 102 SER A 117 1 ? 16 HELX_P HELX_P11 AB2 ARG B 139 ? ASP B 141 ? ARG A 139 ASP A 141 5 ? 3 HELX_P HELX_P12 AB3 SER B 192 ? ALA B 197 ? SER A 192 ALA A 197 1 ? 6 HELX_P HELX_P13 AB4 ALA B 197 ? ASN B 217 ? ALA A 197 ASN A 217 1 ? 21 HELX_P HELX_P14 AB5 ALA B 237 ? HIS B 252 ? ALA A 237 HIS A 252 1 ? 16 HELX_P HELX_P15 AB6 GLY B 254 ? ALA B 258 ? GLY A 254 ALA A 258 5 ? 5 HELX_P HELX_P16 AB7 PHE B 282 ? GLY B 298 ? PHE A 282 GLY A 298 1 ? 17 HELX_P HELX_P17 AB8 PRO B 300 ? GLY B 305 ? PRO A 300 GLY A 305 1 ? 6 HELX_P HELX_P18 AB9 TYR B 315 ? THR B 326 ? TYR A 315 THR A 326 1 ? 12 HELX_P HELX_P19 AC1 VAL B 327 ? SER B 343 ? VAL A 327 SER A 343 1 ? 17 HELX_P HELX_P20 AC2 VAL B 359 ? ALA B 361 ? VAL A 359 ALA A 361 5 ? 3 HELX_P HELX_P21 AC3 LEU B 362 ? ALA B 375 ? LEU A 362 ALA A 375 1 ? 14 HELX_P HELX_P22 AC4 SER B 380 ? LEU B 388 ? SER A 380 LEU A 388 1 ? 9 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 3 ? AA2 ? 4 ? AA3 ? 2 ? AA4 ? 2 ? AA5 ? 3 ? AA6 ? 3 ? AA7 ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA2 1 2 ? anti-parallel AA2 2 3 ? anti-parallel AA2 3 4 ? anti-parallel AA3 1 2 ? anti-parallel AA4 1 2 ? anti-parallel AA5 1 2 ? anti-parallel AA5 2 3 ? anti-parallel AA6 1 2 ? anti-parallel AA6 2 3 ? anti-parallel AA7 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 ARG A 61 ? GLY A 62 ? ARG B 61 GLY B 62 AA1 2 VAL A 132 ? ALA A 138 ? VAL B 132 ALA B 138 AA1 3 LEU A 65 ? LEU A 67 ? LEU B 65 LEU B 67 AA2 1 ARG A 61 ? GLY A 62 ? ARG B 61 GLY B 62 AA2 2 VAL A 132 ? ALA A 138 ? VAL B 132 ALA B 138 AA2 3 VAL A 83 ? LEU A 91 ? VAL B 83 LEU B 91 AA2 4 THR A 99 ? VAL A 101 ? THR B 99 VAL B 101 AA3 1 LEU A 107 ? VAL A 108 ? LEU B 107 VAL B 108 AA3 2 ARG A 115 ? ILE A 116 ? ARG B 115 ILE B 116 AA4 1 LEU B 76 ? ILE B 77 ? LEU A 76 ILE A 77 AA4 2 LYS B 353 ? PRO B 354 ? LYS A 353 PRO A 354 AA5 1 GLU B 134 ? HIS B 136 ? GLU A 134 HIS A 136 AA5 2 ASN B 119 ? VAL B 125 ? ASN A 119 VAL A 125 AA5 3 ILE B 176 ? LYS B 180 ? ILE A 176 LYS A 180 AA6 1 MET B 143 ? VAL B 146 ? MET A 143 VAL A 146 AA6 2 GLY B 155 ? TYR B 158 ? GLY A 155 TYR A 158 AA6 3 PHE B 167 ? ASP B 168 ? PHE A 167 ASP A 168 AA7 1 ILE B 225 ? TYR B 227 ? ILE A 225 TYR A 227 AA7 2 LEU B 268 ? TRP B 270 ? LEU A 268 TRP A 270 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N ARG A 61 ? N ARG B 61 O ALA A 138 ? O ALA B 138 AA1 2 3 O ILE A 134 ? O ILE B 134 N LEU A 65 ? N LEU B 65 AA2 1 2 N ARG A 61 ? N ARG B 61 O ALA A 138 ? O ALA B 138 AA2 2 3 O ASP A 135 ? O ASP B 135 N THR A 87 ? N THR B 87 AA2 3 4 N LEU A 91 ? N LEU B 91 O THR A 99 ? O THR B 99 AA3 1 2 N VAL A 108 ? N VAL B 108 O ARG A 115 ? O ARG B 115 AA4 1 2 N ILE B 77 ? N ILE A 77 O LYS B 353 ? O LYS A 353 AA5 1 2 O HIS B 136 ? O HIS A 136 N GLU B 123 ? N GLU A 123 AA5 2 3 N GLY B 120 ? N GLY A 120 O ILE B 179 ? O ILE A 179 AA6 1 2 N ALA B 144 ? N ALA A 144 O ASP B 157 ? O ASP A 157 AA6 2 3 N TYR B 156 ? N TYR A 156 O PHE B 167 ? O PHE A 167 AA7 1 2 N ILE B 226 ? N ILE A 226 O ASP B 269 ? O ASP A 269 # _atom_sites.entry_id 6TE8 _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 1 MET MET B . n A 1 2 MET 2 2 2 MET MET B . n A 1 3 LEU 3 3 3 LEU LEU B . n A 1 4 ASN 4 4 4 ASN ASN B . n A 1 5 GLU 5 5 5 GLU GLU B . n A 1 6 VAL 6 6 6 VAL VAL B . n A 1 7 THR 7 7 7 THR THR B . n A 1 8 ALA 8 8 8 ALA ALA B . n A 1 9 VAL 9 9 9 VAL VAL B . n A 1 10 PRO 10 10 10 PRO PRO B . n A 1 11 GLY 11 11 11 GLY GLY B . n A 1 12 THR 12 12 12 THR THR B . n A 1 13 ALA 13 13 13 ALA ALA B . n A 1 14 LEU 14 14 14 LEU LEU B . n A 1 15 PRO 15 15 15 PRO PRO B . n A 1 16 VAL 16 16 16 VAL VAL B . n A 1 17 ALA 17 17 17 ALA ALA B . n A 1 18 GLU 18 18 18 GLU GLU B . n A 1 19 PHE 19 19 19 PHE PHE B . n A 1 20 ARG 20 20 20 ARG ARG B . n A 1 21 ASP 21 21 21 ASP ASP B . n A 1 22 HIS 22 22 22 HIS HIS B . n A 1 23 LEU 23 23 23 LEU LEU B . n A 1 24 ARG 24 24 ? ? ? B . n A 1 25 LEU 25 25 ? ? ? B . n A 1 26 GLY 26 26 ? ? ? B . n A 1 27 THR 27 27 ? ? ? B . n A 1 28 GLY 28 28 ? ? ? B . n A 1 29 PHE 29 29 ? ? ? B . n A 1 30 ALA 30 30 ? ? ? B . n A 1 31 ASP 31 31 ? ? ? B . n A 1 32 LEU 32 32 ? ? ? B . n A 1 33 GLY 33 33 ? ? ? B . n A 1 34 ALA 34 34 ? ? ? B . n A 1 35 GLU 35 35 ? ? ? B . n A 1 36 ASP 36 36 36 ASP ASP B . n A 1 37 ALA 37 37 37 ALA ALA B . n A 1 38 ALA 38 38 38 ALA ALA B . n A 1 39 LEU 39 39 39 LEU LEU B . n A 1 40 LEU 40 40 40 LEU LEU B . n A 1 41 SER 41 41 41 SER SER B . n A 1 42 TYR 42 42 42 TYR TYR B . n A 1 43 LEU 43 43 43 LEU LEU B . n A 1 44 ARG 44 44 44 ARG ARG B . n A 1 45 ALA 45 45 45 ALA ALA B . n A 1 46 ALA 46 46 46 ALA ALA B . n A 1 47 ILE 47 47 47 ILE ILE B . n A 1 48 ALA 48 48 48 ALA ALA B . n A 1 49 ALA 49 49 49 ALA ALA B . n A 1 50 ILE 50 50 50 ILE ILE B . n A 1 51 GLU 51 51 51 GLU GLU B . n A 1 52 GLY 52 52 52 GLY GLY B . n A 1 53 ARG 53 53 53 ARG ARG B . n A 1 54 THR 54 54 54 THR THR B . n A 1 55 ALA 55 55 55 ALA ALA B . n A 1 56 LYS 56 56 56 LYS LYS B . n A 1 57 ALA 57 57 57 ALA ALA B . n A 1 58 LEU 58 58 58 LEU LEU B . n A 1 59 ILE 59 59 59 ILE ILE B . n A 1 60 SER 60 60 60 SER SER B . n A 1 61 ARG 61 61 61 ARG ARG B . n A 1 62 GLY 62 62 62 GLY GLY B . n A 1 63 PHE 63 63 63 PHE PHE B . n A 1 64 ARG 64 64 64 ARG ARG B . n A 1 65 LEU 65 65 65 LEU LEU B . n A 1 66 ALA 66 66 66 ALA ALA B . n A 1 67 LEU 67 67 67 LEU LEU B . n A 1 68 THR 68 68 68 THR THR B . n A 1 69 ALA 69 69 69 ALA ALA B . n A 1 70 TRP 70 70 70 TRP TRP B . n A 1 71 ARG 71 71 71 ARG ARG B . n A 1 72 TRP 72 72 72 TRP TRP B . n A 1 73 GLY 73 73 73 GLY GLY B . n A 1 74 ASP 74 74 74 ASP ASP B . n A 1 75 MET 75 75 75 MET MET B . n A 1 76 GLN 76 76 76 GLN GLN B . n A 1 77 THR 77 77 77 THR THR B . n A 1 78 LEU 78 78 78 LEU LEU B . n A 1 79 PRO 79 79 79 PRO PRO B . n A 1 80 ILE 80 80 80 ILE ILE B . n A 1 81 ALA 81 81 81 ALA ALA B . n A 1 82 PRO 82 82 82 PRO PRO B . n A 1 83 VAL 83 83 83 VAL VAL B . n A 1 84 ALA 84 84 84 ALA ALA B . n A 1 85 THR 85 85 85 THR THR B . n A 1 86 VAL 86 86 86 VAL VAL B . n A 1 87 THR 87 87 87 THR THR B . n A 1 88 ALA 88 88 88 ALA ALA B . n A 1 89 LEU 89 89 89 LEU LEU B . n A 1 90 ARG 90 90 90 ARG ARG B . n A 1 91 LEU 91 91 91 LEU LEU B . n A 1 92 VAL 92 92 92 VAL VAL B . n A 1 93 ASP 93 93 93 ASP ASP B . n A 1 94 ALA 94 94 94 ALA ALA B . n A 1 95 ALA 95 95 95 ALA ALA B . n A 1 96 GLY 96 96 96 GLY GLY B . n A 1 97 VAL 97 97 97 VAL VAL B . n A 1 98 GLU 98 98 98 GLU GLU B . n A 1 99 THR 99 99 99 THR THR B . n A 1 100 PRO 100 100 100 PRO PRO B . n A 1 101 VAL 101 101 101 VAL VAL B . n A 1 102 ALA 102 102 102 ALA ALA B . n A 1 103 ALA 103 103 103 ALA ALA B . n A 1 104 GLY 104 104 104 GLY GLY B . n A 1 105 TRP 105 105 105 TRP TRP B . n A 1 106 ARG 106 106 106 ARG ARG B . n A 1 107 LEU 107 107 107 LEU LEU B . n A 1 108 VAL 108 108 108 VAL VAL B . n A 1 109 PRO 109 109 109 PRO PRO B . n A 1 110 ASP 110 110 110 ASP ASP B . n A 1 111 MET 111 111 111 MET MET B . n A 1 112 ALA 112 112 112 ALA ALA B . n A 1 113 ARG 113 113 113 ARG ARG B . n A 1 114 PRO 114 114 114 PRO PRO B . n A 1 115 ARG 115 115 115 ARG ARG B . n A 1 116 ILE 116 116 116 ILE ILE B . n A 1 117 GLU 117 117 117 GLU GLU B . n A 1 118 ALA 118 118 118 ALA ALA B . n A 1 119 LEU 119 119 119 LEU LEU B . n A 1 120 GLY 120 120 120 GLY GLY B . n A 1 121 ALA 121 121 121 ALA ALA B . n A 1 122 MET 122 122 122 MET MET B . n A 1 123 LEU 123 123 123 LEU LEU B . n A 1 124 PRO 124 124 124 PRO PRO B . n A 1 125 MET 125 125 125 MET MET B . n A 1 126 ILE 126 126 126 ILE ILE B . n A 1 127 PRO 127 127 127 PRO PRO B . n A 1 128 THR 128 128 128 THR THR B . n A 1 129 GLY 129 129 129 GLY GLY B . n A 1 130 GLY 130 130 130 GLY GLY B . n A 1 131 ARG 131 131 131 ARG ARG B . n A 1 132 VAL 132 132 132 VAL VAL B . n A 1 133 GLU 133 133 133 GLU GLU B . n A 1 134 ILE 134 134 134 ILE ILE B . n A 1 135 ASP 135 135 135 ASP ASP B . n A 1 136 PHE 136 136 136 PHE PHE B . n A 1 137 THR 137 137 137 THR THR B . n A 1 138 ALA 138 138 138 ALA ALA B . n A 1 139 GLY 139 139 139 GLY GLY B . n A 1 140 PHE 140 140 140 PHE PHE B . n A 1 141 GLY 141 141 141 GLY GLY B . n A 1 142 ALA 142 142 142 ALA ALA B . n A 1 143 SER 143 143 143 SER SER B . n A 1 144 TRP 144 144 144 TRP TRP B . n A 1 145 SER 145 145 145 SER SER B . n A 1 146 ALA 146 146 146 ALA ALA B . n A 1 147 LEU 147 147 147 LEU LEU B . n A 1 148 PRO 148 148 148 PRO PRO B . n A 1 149 VAL 149 149 149 VAL VAL B . n A 1 150 ASP 150 150 150 ASP ASP B . n A 1 151 LEU 151 151 151 LEU LEU B . n A 1 152 ALA 152 152 152 ALA ALA B . n A 1 153 GLN 153 153 153 GLN GLN B . n A 1 154 ALA 154 154 154 ALA ALA B . n A 1 155 VAL 155 155 155 VAL VAL B . n A 1 156 PHE 156 156 156 PHE PHE B . n A 1 157 LEU 157 157 157 LEU LEU B . n A 1 158 LEU 158 158 158 LEU LEU B . n A 1 159 ALA 159 159 159 ALA ALA B . n A 1 160 ALA 160 160 160 ALA ALA B . n A 1 161 GLN 161 161 161 GLN GLN B . n A 1 162 TYR 162 162 162 TYR TYR B . n A 1 163 TYR 163 163 163 TYR TYR B . n A 1 164 GLU 164 164 164 GLU GLU B . n A 1 165 LEU 165 165 165 LEU LEU B . n A 1 166 ARG 166 166 166 ARG ARG B . n A 1 167 HIS 167 167 167 HIS HIS B . n A 1 168 ASP 168 168 168 ASP ASP B . n A 1 169 GLY 169 169 169 GLY GLY B . n A 1 170 ALA 170 170 170 ALA ALA B . n A 1 171 ALA 171 171 171 ALA ALA B . n A 1 172 GLU 172 172 ? ? ? B . n A 1 173 GLY 173 173 ? ? ? B . n A 1 174 GLY 174 174 ? ? ? B . n A 1 175 ALA 175 175 175 ALA ALA B . n A 1 176 MET 176 176 176 MET MET B . n A 1 177 PRO 177 177 177 PRO PRO B . n A 1 178 PHE 178 178 178 PHE PHE B . n A 1 179 GLY 179 179 179 GLY GLY B . n A 1 180 VAL 180 180 180 VAL VAL B . n A 1 181 MET 181 181 181 MET MET B . n A 1 182 ALA 182 182 182 ALA ALA B . n A 1 183 LEU 183 183 183 LEU LEU B . n A 1 184 ILE 184 184 184 ILE ILE B . n A 1 185 GLU 185 185 185 GLU GLU B . n A 1 186 ARG 186 186 186 ARG ARG B . n A 1 187 TRP 187 187 187 TRP TRP B . n A 1 188 ARG 188 188 188 ARG ARG B . n A 1 189 THR 189 189 189 THR THR B . n A 1 190 VAL 190 190 190 VAL VAL B . n A 1 191 ARG 191 191 191 ARG ARG B . n A 1 192 VAL 192 192 192 VAL VAL B . n A 1 193 LEU 193 193 193 LEU LEU B . n A 1 194 GLY 194 194 194 GLY GLY B . n A 1 195 GLY 195 195 195 GLY GLY B . n A 1 196 ARG 196 196 196 ARG ARG B . n A 1 197 PRO 197 197 197 PRO PRO B . n B 2 1 MET 1 1 ? ? ? A . n B 2 2 GLY 2 2 ? ? ? A . n B 2 3 LEU 3 3 ? ? ? A . n B 2 4 ASN 4 4 ? ? ? A . n B 2 5 PHE 5 5 ? ? ? A . n B 2 6 PHE 6 6 ? ? ? A . n B 2 7 ARG 7 7 ? ? ? A . n B 2 8 LYS 8 8 ? ? ? A . n B 2 9 ALA 9 9 ? ? ? A . n B 2 10 ALA 10 10 ? ? ? A . n B 2 11 PRO 11 11 ? ? ? A . n B 2 12 GLU 12 12 ? ? ? A . n B 2 13 VAL 13 13 ? ? ? A . n B 2 14 ARG 14 14 ? ? ? A . n B 2 15 THR 15 15 ? ? ? A . n B 2 16 GLU 16 16 ? ? ? A . n B 2 17 PRO 17 17 ? ? ? A . n B 2 18 VAL 18 18 ? ? ? A . n B 2 19 ALA 19 19 ? ? ? A . n B 2 20 GLU 20 20 ? ? ? A . n B 2 21 ARG 21 21 ? ? ? A . n B 2 22 LYS 22 22 ? ? ? A . n B 2 23 ALA 23 23 ? ? ? A . n B 2 24 SER 24 24 24 SER SER A . n B 2 25 VAL 25 25 25 VAL VAL A . n B 2 26 THR 26 26 26 THR THR A . n B 2 27 GLY 27 27 27 GLY GLY A . n B 2 28 ARG 28 28 28 ARG ARG A . n B 2 29 ILE 29 29 29 ILE ILE A . n B 2 30 VAL 30 30 30 VAL VAL A . n B 2 31 ALA 31 31 31 ALA ALA A . n B 2 32 MET 32 32 32 MET MET A . n B 2 33 ALA 33 33 33 ALA ALA A . n B 2 34 SER 34 34 34 SER SER A . n B 2 35 GLY 35 35 35 GLY GLY A . n B 2 36 ALA 36 36 36 ALA ALA A . n B 2 37 GLY 37 37 37 GLY GLY A . n B 2 38 ARG 38 38 38 ARG ARG A . n B 2 39 PRO 39 39 39 PRO PRO A . n B 2 40 VAL 40 40 40 VAL VAL A . n B 2 41 TRP 41 41 41 TRP TRP A . n B 2 42 GLY 42 42 42 GLY GLY A . n B 2 43 PRO 43 43 43 PRO PRO A . n B 2 44 ARG 44 44 44 ARG ARG A . n B 2 45 ASP 45 45 45 ASP ASP A . n B 2 46 THR 46 46 46 THR THR A . n B 2 47 VAL 47 47 47 VAL VAL A . n B 2 48 SER 48 48 48 SER SER A . n B 2 49 LEU 49 49 49 LEU LEU A . n B 2 50 MET 50 50 50 MET MET A . n B 2 51 ARG 51 51 51 ARG ARG A . n B 2 52 THR 52 52 52 THR THR A . n B 2 53 GLY 53 53 53 GLY GLY A . n B 2 54 PHE 54 54 54 PHE PHE A . n B 2 55 ALA 55 55 55 ALA ALA A . n B 2 56 GLY 56 56 56 GLY GLY A . n B 2 57 ASN 57 57 57 ASN ASN A . n B 2 58 PRO 58 58 58 PRO PRO A . n B 2 59 VAL 59 59 59 VAL VAL A . n B 2 60 GLY 60 60 60 GLY GLY A . n B 2 61 PHE 61 61 61 PHE PHE A . n B 2 62 ARG 62 62 62 ARG ARG A . n B 2 63 SER 63 63 63 SER SER A . n B 2 64 VAL 64 64 64 VAL VAL A . n B 2 65 LYS 65 65 65 LYS LYS A . n B 2 66 LEU 66 66 66 LEU LEU A . n B 2 67 ILE 67 67 67 ILE ILE A . n B 2 68 ALA 68 68 68 ALA ALA A . n B 2 69 GLU 69 69 69 GLU GLU A . n B 2 70 ALA 70 70 70 ALA ALA A . n B 2 71 THR 71 71 71 THR THR A . n B 2 72 ALA 72 72 72 ALA ALA A . n B 2 73 ALA 73 73 73 ALA ALA A . n B 2 74 VAL 74 74 74 VAL VAL A . n B 2 75 PRO 75 75 75 PRO PRO A . n B 2 76 LEU 76 76 76 LEU LEU A . n B 2 77 ILE 77 77 77 ILE ILE A . n B 2 78 CYS 78 78 78 CYS CYS A . n B 2 79 GLN 79 79 79 GLN GLN A . n B 2 80 ASP 80 80 ? ? ? A . n B 2 81 ALA 81 81 ? ? ? A . n B 2 82 GLU 82 82 ? ? ? A . n B 2 83 ARG 83 83 ? ? ? A . n B 2 84 ARG 84 84 ? ? ? A . n B 2 85 TYR 85 85 ? ? ? A . n B 2 86 GLU 86 86 ? ? ? A . n B 2 87 ILE 87 87 ? ? ? A . n B 2 88 HIS 88 88 ? ? ? A . n B 2 89 PRO 89 89 ? ? ? A . n B 2 90 VAL 90 90 90 VAL VAL A . n B 2 91 LEU 91 91 91 LEU LEU A . n B 2 92 ASP 92 92 92 ASP ASP A . n B 2 93 LEU 93 93 93 LEU LEU A . n B 2 94 LEU 94 94 94 LEU LEU A . n B 2 95 ARG 95 95 95 ARG ARG A . n B 2 96 ARG 96 96 96 ARG ARG A . n B 2 97 PRO 97 97 97 PRO PRO A . n B 2 98 ASN 98 98 98 ASN ASN A . n B 2 99 ALA 99 99 99 ALA ALA A . n B 2 100 GLY 100 100 100 GLY GLY A . n B 2 101 GLN 101 101 101 GLN GLN A . n B 2 102 GLY 102 102 102 GLY GLY A . n B 2 103 ARG 103 103 103 ARG ARG A . n B 2 104 ALA 104 104 104 ALA ALA A . n B 2 105 GLU 105 105 105 GLU GLU A . n B 2 106 LEU 106 106 106 LEU LEU A . n B 2 107 PHE 107 107 107 PHE PHE A . n B 2 108 GLU 108 108 108 GLU GLU A . n B 2 109 ALA 109 109 109 ALA ALA A . n B 2 110 LEU 110 110 110 LEU LEU A . n B 2 111 ILE 111 111 111 ILE ILE A . n B 2 112 GLY 112 112 112 GLY GLY A . n B 2 113 GLN 113 113 113 GLN GLN A . n B 2 114 ILE 114 114 114 ILE ILE A . n B 2 115 LEU 115 115 115 LEU LEU A . n B 2 116 LEU 116 116 116 LEU LEU A . n B 2 117 SER 117 117 117 SER SER A . n B 2 118 GLY 118 118 118 GLY GLY A . n B 2 119 ASN 119 119 119 ASN ASN A . n B 2 120 GLY 120 120 120 GLY GLY A . n B 2 121 TYR 121 121 121 TYR TYR A . n B 2 122 LEU 122 122 122 LEU LEU A . n B 2 123 GLU 123 123 123 GLU GLU A . n B 2 124 ALA 124 124 124 ALA ALA A . n B 2 125 VAL 125 125 125 VAL VAL A . n B 2 126 CYS 126 126 126 CYS CYS A . n B 2 127 PRO 127 127 127 PRO PRO A . n B 2 128 GLU 128 128 128 GLU GLU A . n B 2 129 PRO 129 129 129 PRO PRO A . n B 2 130 GLY 130 130 130 GLY GLY A . n B 2 131 VAL 131 131 131 VAL VAL A . n B 2 132 PRO 132 132 132 PRO PRO A . n B 2 133 ARG 133 133 133 ARG ARG A . n B 2 134 GLU 134 134 134 GLU GLU A . n B 2 135 LEU 135 135 135 LEU LEU A . n B 2 136 HIS 136 136 136 HIS HIS A . n B 2 137 VAL 137 137 137 VAL VAL A . n B 2 138 LEU 138 138 138 LEU LEU A . n B 2 139 ARG 139 139 139 ARG ARG A . n B 2 140 SER 140 140 140 SER SER A . n B 2 141 ASP 141 141 141 ASP ASP A . n B 2 142 ARG 142 142 142 ARG ARG A . n B 2 143 MET 143 143 143 MET MET A . n B 2 144 ALA 144 144 144 ALA ALA A . n B 2 145 VAL 145 145 145 VAL VAL A . n B 2 146 VAL 146 146 146 VAL VAL A . n B 2 147 PRO 147 147 147 PRO PRO A . n B 2 148 GLY 148 148 148 GLY GLY A . n B 2 149 ALA 149 149 149 ALA ALA A . n B 2 150 ASP 150 150 150 ASP ASP A . n B 2 151 GLY 151 151 151 GLY GLY A . n B 2 152 TRP 152 152 152 TRP TRP A . n B 2 153 PRO 153 153 153 PRO PRO A . n B 2 154 VAL 154 154 154 VAL VAL A . n B 2 155 GLY 155 155 155 GLY GLY A . n B 2 156 TYR 156 156 156 TYR TYR A . n B 2 157 ASP 157 157 157 ASP ASP A . n B 2 158 TYR 158 158 158 TYR TYR A . n B 2 159 THR 159 159 159 THR THR A . n B 2 160 VAL 160 160 160 VAL VAL A . n B 2 161 GLY 161 161 161 GLY GLY A . n B 2 162 GLY 162 162 162 GLY GLY A . n B 2 163 ARG 163 163 163 ARG ARG A . n B 2 164 LYS 164 164 164 LYS LYS A . n B 2 165 HIS 165 165 165 HIS HIS A . n B 2 166 ARG 166 166 166 ARG ARG A . n B 2 167 PHE 167 167 167 PHE PHE A . n B 2 168 ASP 168 168 168 ASP ASP A . n B 2 169 MET 169 169 169 MET MET A . n B 2 170 THR 170 170 170 THR THR A . n B 2 171 GLY 171 171 171 GLY GLY A . n B 2 172 HIS 172 172 172 HIS HIS A . n B 2 173 PRO 173 173 173 PRO PRO A . n B 2 174 ASP 174 174 174 ASP ASP A . n B 2 175 PRO 175 175 175 PRO PRO A . n B 2 176 ILE 176 176 176 ILE ILE A . n B 2 177 CYS 177 177 177 CYS CYS A . n B 2 178 HIS 178 178 178 HIS HIS A . n B 2 179 ILE 179 179 179 ILE ILE A . n B 2 180 LYS 180 180 180 LYS LYS A . n B 2 181 SER 181 181 181 SER SER A . n B 2 182 PHE 182 182 182 PHE PHE A . n B 2 183 HIS 183 183 183 HIS HIS A . n B 2 184 PRO 184 184 184 PRO PRO A . n B 2 185 THR 185 185 185 THR THR A . n B 2 186 ASP 186 186 186 ASP ASP A . n B 2 187 ASP 187 187 187 ASP ASP A . n B 2 188 HIS 188 188 188 HIS HIS A . n B 2 189 TYR 189 189 189 TYR TYR A . n B 2 190 GLY 190 190 190 GLY GLY A . n B 2 191 LEU 191 191 191 LEU LEU A . n B 2 192 SER 192 192 192 SER SER A . n B 2 193 PRO 193 193 193 PRO PRO A . n B 2 194 MET 194 194 194 MET MET A . n B 2 195 GLN 195 195 195 GLN GLN A . n B 2 196 ALA 196 196 196 ALA ALA A . n B 2 197 ALA 197 197 197 ALA ALA A . n B 2 198 ALA 198 198 198 ALA ALA A . n B 2 199 VAL 199 199 199 VAL VAL A . n B 2 200 ALA 200 200 200 ALA ALA A . n B 2 201 LEU 201 201 201 LEU LEU A . n B 2 202 ASP 202 202 202 ASP ASP A . n B 2 203 VAL 203 203 203 VAL VAL A . n B 2 204 HIS 204 204 204 HIS HIS A . n B 2 205 ASN 205 205 205 ASN ASN A . n B 2 206 ALA 206 206 206 ALA ALA A . n B 2 207 ALA 207 207 207 ALA ALA A . n B 2 208 SER 208 208 208 SER SER A . n B 2 209 ALA 209 209 209 ALA ALA A . n B 2 210 TRP 210 210 210 TRP TRP A . n B 2 211 SER 211 211 211 SER SER A . n B 2 212 LYS 212 212 212 LYS LYS A . n B 2 213 ALA 213 213 213 ALA ALA A . n B 2 214 LEU 214 214 214 LEU LEU A . n B 2 215 LEU 215 215 215 LEU LEU A . n B 2 216 ASP 216 216 216 ASP ASP A . n B 2 217 ASN 217 217 217 ASN ASN A . n B 2 218 ALA 218 218 218 ALA ALA A . n B 2 219 ALA 219 219 219 ALA ALA A . n B 2 220 ARG 220 220 220 ARG ARG A . n B 2 221 PRO 221 221 221 PRO PRO A . n B 2 222 SER 222 222 222 SER SER A . n B 2 223 GLY 223 223 223 GLY GLY A . n B 2 224 ALA 224 224 224 ALA ALA A . n B 2 225 ILE 225 225 225 ILE ILE A . n B 2 226 ILE 226 226 226 ILE ILE A . n B 2 227 TYR 227 227 227 TYR TYR A . n B 2 228 LYS 228 228 228 LYS LYS A . n B 2 229 GLY 229 229 229 GLY GLY A . n B 2 230 ALA 230 230 230 ALA ALA A . n B 2 231 ASP 231 231 231 ASP ASP A . n B 2 232 GLY 232 232 232 GLY GLY A . n B 2 233 GLN 233 233 233 GLN GLN A . n B 2 234 GLY 234 234 234 GLY GLY A . n B 2 235 VAL 235 235 235 VAL VAL A . n B 2 236 LEU 236 236 236 LEU LEU A . n B 2 237 ALA 237 237 237 ALA ALA A . n B 2 238 PRO 238 238 238 PRO PRO A . n B 2 239 GLU 239 239 239 GLU GLU A . n B 2 240 GLN 240 240 240 GLN GLN A . n B 2 241 TYR 241 241 241 TYR TYR A . n B 2 242 GLU 242 242 242 GLU GLU A . n B 2 243 ARG 243 243 243 ARG ARG A . n B 2 244 LEU 244 244 244 LEU LEU A . n B 2 245 ILE 245 245 245 ILE ILE A . n B 2 246 PHE 246 246 246 PHE PHE A . n B 2 247 GLU 247 247 247 GLU GLU A . n B 2 248 MET 248 248 248 MET MET A . n B 2 249 GLU 249 249 249 GLU GLU A . n B 2 250 THR 250 250 250 THR THR A . n B 2 251 HIS 251 251 251 HIS HIS A . n B 2 252 HIS 252 252 252 HIS HIS A . n B 2 253 GLN 253 253 253 GLN GLN A . n B 2 254 GLY 254 254 254 GLY GLY A . n B 2 255 ALA 255 255 255 ALA ALA A . n B 2 256 ARG 256 256 256 ARG ARG A . n B 2 257 ASN 257 257 257 ASN ASN A . n B 2 258 ALA 258 258 258 ALA ALA A . n B 2 259 GLY 259 259 259 GLY GLY A . n B 2 260 ARG 260 260 260 ARG ARG A . n B 2 261 PRO 261 261 261 PRO PRO A . n B 2 262 MET 262 262 262 MET MET A . n B 2 263 LEU 263 263 263 LEU LEU A . n B 2 264 LEU 264 264 264 LEU LEU A . n B 2 265 GLU 265 265 265 GLU GLU A . n B 2 266 GLY 266 266 266 GLY GLY A . n B 2 267 GLY 267 267 267 GLY GLY A . n B 2 268 LEU 268 268 268 LEU LEU A . n B 2 269 ASP 269 269 269 ASP ASP A . n B 2 270 TRP 270 270 270 TRP TRP A . n B 2 271 LYS 271 271 271 LYS LYS A . n B 2 272 PRO 272 272 272 PRO PRO A . n B 2 273 MET 273 273 273 MET MET A . n B 2 274 GLY 274 274 274 GLY GLY A . n B 2 275 PHE 275 275 275 PHE PHE A . n B 2 276 SER 276 276 276 SER SER A . n B 2 277 PRO 277 277 277 PRO PRO A . n B 2 278 SER 278 278 278 SER SER A . n B 2 279 ASP 279 279 279 ASP ASP A . n B 2 280 MET 280 280 280 MET MET A . n B 2 281 GLU 281 281 281 GLU GLU A . n B 2 282 PHE 282 282 282 PHE PHE A . n B 2 283 HIS 283 283 283 HIS HIS A . n B 2 284 GLU 284 284 284 GLU GLU A . n B 2 285 THR 285 285 285 THR THR A . n B 2 286 LYS 286 286 286 LYS LYS A . n B 2 287 ALA 287 287 287 ALA ALA A . n B 2 288 ALA 288 288 288 ALA ALA A . n B 2 289 ALA 289 289 289 ALA ALA A . n B 2 290 ALA 290 290 290 ALA ALA A . n B 2 291 ARG 291 291 291 ARG ARG A . n B 2 292 GLU 292 292 292 GLU GLU A . n B 2 293 ILE 293 293 293 ILE ILE A . n B 2 294 ALA 294 294 294 ALA ALA A . n B 2 295 LEU 295 295 295 LEU LEU A . n B 2 296 ALA 296 296 296 ALA ALA A . n B 2 297 PHE 297 297 297 PHE PHE A . n B 2 298 GLY 298 298 298 GLY GLY A . n B 2 299 VAL 299 299 299 VAL VAL A . n B 2 300 PRO 300 300 300 PRO PRO A . n B 2 301 PRO 301 301 301 PRO PRO A . n B 2 302 MET 302 302 302 MET MET A . n B 2 303 LEU 303 303 303 LEU LEU A . n B 2 304 ILE 304 304 304 ILE ILE A . n B 2 305 GLY 305 305 305 GLY GLY A . n B 2 306 ILE 306 306 306 ILE ILE A . n B 2 307 PRO 307 307 307 PRO PRO A . n B 2 308 GLY 308 308 308 GLY GLY A . n B 2 309 ASP 309 309 309 ASP ASP A . n B 2 310 ALA 310 310 310 ALA ALA A . n B 2 311 THR 311 311 311 THR THR A . n B 2 312 TYR 312 312 312 TYR TYR A . n B 2 313 ALA 313 313 313 ALA ALA A . n B 2 314 ASN 314 314 314 ASN ASN A . n B 2 315 TYR 315 315 315 TYR TYR A . n B 2 316 ALA 316 316 316 ALA ALA A . n B 2 317 GLU 317 317 317 GLU GLU A . n B 2 318 ALA 318 318 318 ALA ALA A . n B 2 319 ASN 319 319 319 ASN ASN A . n B 2 320 ARG 320 320 320 ARG ARG A . n B 2 321 ALA 321 321 321 ALA ALA A . n B 2 322 PHE 322 322 322 PHE PHE A . n B 2 323 TYR 323 323 323 TYR TYR A . n B 2 324 ARG 324 324 324 ARG ARG A . n B 2 325 LEU 325 325 325 LEU LEU A . n B 2 326 THR 326 326 326 THR THR A . n B 2 327 VAL 327 327 327 VAL VAL A . n B 2 328 LEU 328 328 328 LEU LEU A . n B 2 329 PRO 329 329 329 PRO PRO A . n B 2 330 LEU 330 330 330 LEU LEU A . n B 2 331 LEU 331 331 331 LEU LEU A . n B 2 332 THR 332 332 332 THR THR A . n B 2 333 ARG 333 333 333 ARG ARG A . n B 2 334 VAL 334 334 334 VAL VAL A . n B 2 335 SER 335 335 335 SER SER A . n B 2 336 ALA 336 336 336 ALA ALA A . n B 2 337 ALA 337 337 337 ALA ALA A . n B 2 338 LEU 338 338 338 LEU LEU A . n B 2 339 ALA 339 339 339 ALA ALA A . n B 2 340 TRP 340 340 340 TRP TRP A . n B 2 341 TRP 341 341 341 TRP TRP A . n B 2 342 LEU 342 342 342 LEU LEU A . n B 2 343 SER 343 343 343 SER SER A . n B 2 344 GLY 344 344 344 GLY GLY A . n B 2 345 TYR 345 345 345 TYR TYR A . n B 2 346 LEU 346 346 346 LEU LEU A . n B 2 347 GLY 347 347 347 GLY GLY A . n B 2 348 ALA 348 348 348 ALA ALA A . n B 2 349 GLN 349 349 349 GLN GLN A . n B 2 350 ILE 350 350 350 ILE ILE A . n B 2 351 GLU 351 351 351 GLU GLU A . n B 2 352 LEU 352 352 352 LEU LEU A . n B 2 353 LYS 353 353 353 LYS LYS A . n B 2 354 PRO 354 354 354 PRO PRO A . n B 2 355 ASP 355 355 355 ASP ASP A . n B 2 356 LEU 356 356 356 LEU LEU A . n B 2 357 ASP 357 357 357 ASP ASP A . n B 2 358 GLN 358 358 358 GLN GLN A . n B 2 359 VAL 359 359 359 VAL VAL A . n B 2 360 PRO 360 360 360 PRO PRO A . n B 2 361 ALA 361 361 361 ALA ALA A . n B 2 362 LEU 362 362 362 LEU LEU A . n B 2 363 ALA 363 363 363 ALA ALA A . n B 2 364 VAL 364 364 364 VAL VAL A . n B 2 365 GLU 365 365 365 GLU GLU A . n B 2 366 ARG 366 366 366 ARG ARG A . n B 2 367 ASP 367 367 367 ASP ASP A . n B 2 368 GLN 368 368 368 GLN GLN A . n B 2 369 LEU 369 369 369 LEU LEU A . n B 2 370 TRP 370 370 370 TRP TRP A . n B 2 371 ALA 371 371 371 ALA ALA A . n B 2 372 ARG 372 372 372 ARG ARG A . n B 2 373 ILE 373 373 373 ILE ILE A . n B 2 374 GLY 374 374 374 GLY GLY A . n B 2 375 ALA 375 375 375 ALA ALA A . n B 2 376 ALA 376 376 376 ALA ALA A . n B 2 377 GLY 377 377 377 GLY GLY A . n B 2 378 PHE 378 378 378 PHE PHE A . n B 2 379 LEU 379 379 379 LEU LEU A . n B 2 380 SER 380 380 380 SER SER A . n B 2 381 ASN 381 381 381 ASN ASN A . n B 2 382 SER 382 382 382 SER SER A . n B 2 383 GLU 383 383 383 GLU GLU A . n B 2 384 LYS 384 384 384 LYS LYS A . n B 2 385 ARG 385 385 385 ARG ARG A . n B 2 386 VAL 386 386 386 VAL VAL A . n B 2 387 LEU 387 387 387 LEU LEU A . n B 2 388 LEU 388 388 388 LEU LEU A . n B 2 389 GLY 389 389 389 GLY GLY A . n B 2 390 LEU 390 390 390 LEU LEU A . n B 2 391 PRO 391 391 391 PRO PRO A . n B 2 392 PRO 392 392 392 PRO PRO A . n B 2 393 THR 393 393 393 THR THR A . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 24-meric _pdbx_struct_assembly.oligomeric_count 24 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,10,11,12,2,3,4,5,6,7,8,9 _pdbx_struct_assembly_gen.asym_id_list A,B # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' ? ? 1.000000 -0.000000 0.000000 0.00000 -0.000000 1.000000 -0.000000 0.00000 0.000000 -0.000000 1.000000 0.00000 2 'point symmetry operation' ? ? 0.866025 -0.500000 0.000000 101.08725 0.500000 0.866025 -0.000000 -58.36275 0.000000 -0.000000 1.000000 0.00000 3 'point symmetry operation' ? ? 0.500000 -0.866025 0.000000 217.81275 0.866025 0.500000 -0.000000 -58.36275 0.000000 -0.000000 1.000000 0.00000 4 'point symmetry operation' ? ? 0.000000 -1.000000 0.000000 318.90000 1.000000 0.000000 0.000000 -0.00000 0.000000 -0.000000 1.000000 0.00000 5 'point symmetry operation' ? ? -0.500000 -0.866025 0.000000 377.26275 0.866025 -0.500000 0.000000 101.08725 -0.000000 -0.000000 1.000000 0.00000 6 'point symmetry operation' ? ? -0.866025 -0.500000 0.000000 377.26275 0.500000 -0.866025 0.000000 217.81275 -0.000000 -0.000000 1.000000 0.00000 7 'point symmetry operation' ? ? -1.000000 0.000000 0.000000 318.90000 0.000000 -1.000000 0.000000 318.90000 0.000000 0.000000 1.000000 0.00000 8 'point symmetry operation' ? ? -0.866025 0.500000 -0.000000 217.81275 -0.500000 -0.866025 -0.000000 377.26275 0.000000 0.000000 1.000000 -0.00000 9 'point symmetry operation' ? ? -0.500000 0.866025 -0.000000 101.08725 -0.866025 -0.500000 -0.000000 377.26275 0.000000 0.000000 1.000000 -0.00000 10 'point symmetry operation' ? ? -0.000000 1.000000 0.000000 -0.00000 -1.000000 -0.000000 -0.000000 318.90000 0.000000 0.000000 1.000000 -0.00000 11 'point symmetry operation' ? ? 0.500000 0.866025 0.000000 -58.36275 -0.866025 0.500000 -0.000000 217.81275 0.000000 -0.000000 1.000000 -0.00000 12 'point symmetry operation' ? ? 0.866025 0.500000 0.000000 -58.36275 -0.500000 0.866025 -0.000000 101.08725 0.000000 -0.000000 1.000000 -0.00000 # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2020-07-22 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _software.citation_id ? _software.classification refinement _software.compiler_name ? _software.compiler_version ? _software.contact_author ? _software.contact_author_email ? _software.date ? _software.description ? _software.dependencies ? _software.hardware ? _software.language ? _software.location ? _software.mods ? _software.name PHENIX _software.os ? _software.os_version ? _software.type ? _software.version 1.16_3549: _software.pdbx_ordinal 1 # _em_3d_fitting.entry_id 6TE8 _em_3d_fitting.id 1 _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_protocol 'AB INITIO MODEL' _em_3d_fitting.ref_space REAL _em_3d_fitting.target_criteria ? _em_3d_fitting.method ? # _em_3d_reconstruction.entry_id 6TE8 _em_3d_reconstruction.id 1 _em_3d_reconstruction.algorithm 'BACK PROJECTION' _em_3d_reconstruction.details ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.num_particles 41151 _em_3d_reconstruction.resolution 3.32 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.symmetry_type POINT _em_3d_reconstruction.method ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.magnification_calibration ? # _em_buffer.id 1 _em_buffer.details 'G-buffer, doi: 10.1016/0003-9861(77)90508-2' _em_buffer.pH 7.8 _em_buffer.specimen_id 1 _em_buffer.name ? # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.details 'special 5-fold vertex of the capsid, interconnecting capsid to tail' _em_entity_assembly.name 'Rhodobacter capsulatus DE442 gene transfer agent connector' _em_entity_assembly.source NATURAL _em_entity_assembly.type COMPLEX _em_entity_assembly.entity_id_list '1, 2' _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? # _em_image_scans.entry_id 6TE8 _em_image_scans.id 1 _em_image_scans.dimension_height 4096 _em_image_scans.dimension_width 4096 _em_image_scans.frames_per_image ? _em_image_scans.image_recording_id 1 _em_image_scans.sampling_size ? _em_image_scans.scanner_model ? _em_image_scans.used_frames_per_image ? _em_image_scans.citation_id ? _em_image_scans.number_digital_images ? _em_image_scans.od_range ? _em_image_scans.quant_bit_size ? _em_image_scans.details ? # _em_imaging.id 1 _em_imaging.entry_id 6TE8 _em_imaging.accelerating_voltage 300 _em_imaging.alignment_procedure 'ZEMLIN TABLEAU' _em_imaging.c2_aperture_diameter 50 _em_imaging.calibrated_defocus_max ? _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_magnification ? _em_imaging.cryogen NITROGEN _em_imaging.details ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.microscope_model 'FEI TITAN KRIOS' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs 2.7 _em_imaging.nominal_defocus_max -3000 _em_imaging.nominal_defocus_min -1000 _em_imaging.nominal_magnification 75000 _em_imaging.recording_temperature_maximum ? _em_imaging.recording_temperature_minimum ? _em_imaging.residual_tilt ? _em_imaging.specimen_holder_model 'FEI TITAN KRIOS AUTOGRID HOLDER' _em_imaging.specimen_id 1 _em_imaging.citation_id ? _em_imaging.date ? _em_imaging.temperature ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.astigmatism ? _em_imaging.detector_distance ? _em_imaging.electron_beam_tilt_params ? _em_imaging.specimen_holder_type ? # _em_sample_support.id 1 _em_sample_support.specimen_id 1 _em_sample_support.details ? _em_sample_support.grid_material COPPER _em_sample_support.grid_mesh_size 300 _em_sample_support.grid_type 'Quantifoil R2/1' _em_sample_support.method ? _em_sample_support.film_material ? # _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.chamber_temperature 293.15 _em_vitrification.cryogen_name ETHANE _em_vitrification.details ? _em_vitrification.humidity 100 _em_vitrification.instrument 'FEI VITROBOT MARK IV' _em_vitrification.entry_id 6TE8 _em_vitrification.citation_id ? _em_vitrification.method ? _em_vitrification.temp ? _em_vitrification.time_resolved_state ? # _em_experiment.entry_id 6TE8 _em_experiment.id 1 _em_experiment.aggregation_state PARTICLE _em_experiment.reconstruction_method 'SINGLE PARTICLE' _em_experiment.entity_assembly_id 1 # _em_single_particle_entity.entry_id 6TE8 _em_single_particle_entity.id 1 _em_single_particle_entity.image_processing_id 1 _em_single_particle_entity.point_symmetry C12 # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 O _pdbx_validate_close_contact.auth_asym_id_1 B _pdbx_validate_close_contact.auth_comp_id_1 TYR _pdbx_validate_close_contact.auth_seq_id_1 163 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 NH1 _pdbx_validate_close_contact.auth_asym_id_2 B _pdbx_validate_close_contact.auth_comp_id_2 ARG _pdbx_validate_close_contact.auth_seq_id_2 166 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.17 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LEU B 58 ? ? 74.76 -10.69 2 1 TRP B 72 ? ? -128.96 -167.28 3 1 ASP B 74 ? ? -140.54 31.51 4 1 MET B 75 ? ? -152.11 -144.18 5 1 GLN B 76 ? ? 77.95 57.39 6 1 GLU B 117 ? ? -80.96 -73.30 7 1 ALA B 118 ? ? 177.73 174.59 8 1 ARG A 44 ? ? 90.63 177.87 9 1 ASP A 45 ? ? 59.35 -4.83 10 1 THR A 46 ? ? -59.97 -8.01 11 1 VAL A 131 ? ? -31.49 109.18 12 1 THR A 170 ? ? -91.83 52.83 13 1 ASP A 174 ? ? 53.31 75.88 14 1 ALA A 313 ? ? -91.36 -61.82 15 1 ASN A 314 ? ? -144.81 30.77 16 1 TYR A 315 ? ? 70.58 -9.47 17 1 GLN A 349 ? ? -105.57 71.95 18 1 GLN A 358 ? ? -92.68 56.07 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 B ARG 24 ? A ARG 24 2 1 Y 1 B LEU 25 ? A LEU 25 3 1 Y 1 B GLY 26 ? A GLY 26 4 1 Y 1 B THR 27 ? A THR 27 5 1 Y 1 B GLY 28 ? A GLY 28 6 1 Y 1 B PHE 29 ? A PHE 29 7 1 Y 1 B ALA 30 ? A ALA 30 8 1 Y 1 B ASP 31 ? A ASP 31 9 1 Y 1 B LEU 32 ? A LEU 32 10 1 Y 1 B GLY 33 ? A GLY 33 11 1 Y 1 B ALA 34 ? A ALA 34 12 1 Y 1 B GLU 35 ? A GLU 35 13 1 Y 1 B GLU 172 ? A GLU 172 14 1 Y 1 B GLY 173 ? A GLY 173 15 1 Y 1 B GLY 174 ? A GLY 174 16 1 Y 1 A MET 1 ? B MET 1 17 1 Y 1 A GLY 2 ? B GLY 2 18 1 Y 1 A LEU 3 ? B LEU 3 19 1 Y 1 A ASN 4 ? B ASN 4 20 1 Y 1 A PHE 5 ? B PHE 5 21 1 Y 1 A PHE 6 ? B PHE 6 22 1 Y 1 A ARG 7 ? B ARG 7 23 1 Y 1 A LYS 8 ? B LYS 8 24 1 Y 1 A ALA 9 ? B ALA 9 25 1 Y 1 A ALA 10 ? B ALA 10 26 1 Y 1 A PRO 11 ? B PRO 11 27 1 Y 1 A GLU 12 ? B GLU 12 28 1 Y 1 A VAL 13 ? B VAL 13 29 1 Y 1 A ARG 14 ? B ARG 14 30 1 Y 1 A THR 15 ? B THR 15 31 1 Y 1 A GLU 16 ? B GLU 16 32 1 Y 1 A PRO 17 ? B PRO 17 33 1 Y 1 A VAL 18 ? B VAL 18 34 1 Y 1 A ALA 19 ? B ALA 19 35 1 Y 1 A GLU 20 ? B GLU 20 36 1 Y 1 A ARG 21 ? B ARG 21 37 1 Y 1 A LYS 22 ? B LYS 22 38 1 Y 1 A ALA 23 ? B ALA 23 39 1 Y 1 A ASP 80 ? B ASP 80 40 1 Y 1 A ALA 81 ? B ALA 81 41 1 Y 1 A GLU 82 ? B GLU 82 42 1 Y 1 A ARG 83 ? B ARG 83 43 1 Y 1 A ARG 84 ? B ARG 84 44 1 Y 1 A TYR 85 ? B TYR 85 45 1 Y 1 A GLU 86 ? B GLU 86 46 1 Y 1 A ILE 87 ? B ILE 87 47 1 Y 1 A HIS 88 ? B HIS 88 48 1 Y 1 A PRO 89 ? B PRO 89 # loop_ _em_buffer_component.buffer_id _em_buffer_component.id _em_buffer_component.concentration _em_buffer_component.concentration_units _em_buffer_component.formula _em_buffer_component.name 1 1 10 mM ? Tris 1 2 1 mM NaCl ? 1 3 1 mM MgCl2 ? 1 4 1 mM CaCl2 ? 1 5 0.01 mg/ml ? 'Bovine serum albumin' # _em_ctf_correction.id 1 _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.type 'PHASE FLIPPING AND AMPLITUDE CORRECTION' _em_ctf_correction.details ? # _em_entity_assembly_molwt.entity_assembly_id 1 _em_entity_assembly_molwt.id 1 _em_entity_assembly_molwt.experimental_flag NO _em_entity_assembly_molwt.units MEGADALTONS _em_entity_assembly_molwt.value 0.76 # _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.ncbi_tax_id 1415160 _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organism 'Rhodobacter capsulatus DE442' _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? # _em_image_processing.id 1 _em_image_processing.image_recording_id 1 _em_image_processing.details ? # _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.avg_electron_dose_per_image 42.75 _em_image_recording.average_exposure_time 1 _em_image_recording.details ? _em_image_recording.detector_mode INTEGRATING _em_image_recording.film_or_detector_model 'FEI FALCON III (4k x 4k)' _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged 1 _em_image_recording.num_real_images 3114 # _em_particle_selection.id 1 _em_particle_selection.image_processing_id 1 _em_particle_selection.details ? _em_particle_selection.method ? _em_particle_selection.num_particles_selected 41516 _em_particle_selection.reference_model ? # loop_ _em_software.id _em_software.category _em_software.details _em_software.name _em_software.version _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id 1 'PARTICLE SELECTION' ? RELION 2.1 1 ? ? 2 'IMAGE ACQUISITION' ? EPU 2.1 ? ? 1 3 MASKING ? ? ? ? ? ? 4 'CTF CORRECTION' ? RELION 2.1 1 ? ? 5 'LAYERLINE INDEXING' ? ? ? ? ? ? 6 'DIFFRACTION INDEXING' ? ? ? ? ? ? 7 'MODEL FITTING' ? Coot 0.9 ? 1 ? 8 OTHER ? ? ? ? ? ? 9 'INITIAL EULER ASSIGNMENT' ? RELION 2.1 1 ? ? 10 'FINAL EULER ASSIGNMENT' ? RELION 3.0 1 ? ? 11 CLASSIFICATION ? RELION 2.1 1 ? ? 12 RECONSTRUCTION ? RELION 3.0 1 ? ? 13 'MODEL REFINEMENT' ? PHENIX 1.16 ? 1 ? # _em_specimen.id 1 _em_specimen.experiment_id 1 _em_specimen.concentration 20 _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'Ministry of Education (Czech Republic)' 'Czech Republic' LQ1601 1 'European Regional Development Fund' 'Czech Republic' CZ.1.05/1.1.00/02.0070 2 'Ministry of Education (Czech Republic)' 'Czech Republic' LM2011033 3 'Czech Science Foundation' 'Czech Republic' 15-21631Y 4 'Czech Science Foundation' 'Czech Republic' 18-17810S 5 'European Molecular Biology Organization' 'Czech Republic' 3041 6 'Grant Agency of the Czech Republic' 'Czech Republic' 18-13064S 7 #