HEADER DNA BINDING PROTEIN 12-NOV-19 6TEM TITLE CENP-A NUCLEOSOME CORE PARTICLE WITH 145 BASE PAIRS OF THE WIDOM 601 TITLE 2 SEQUENCE BY CRYO-EM COMPND MOL_ID: 1; COMPND 2 MOLECULE: HISTONE H3-LIKE CENTROMERIC PROTEIN A; COMPND 3 CHAIN: A, E; COMPND 4 SYNONYM: CENTROMERE AUTOANTIGEN A,CENTROMERE PROTEIN A,CENP-A; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: HISTONE H4; COMPND 8 CHAIN: B, F; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: HISTONE H2A; COMPND 12 CHAIN: C, G; COMPND 13 ENGINEERED: YES; COMPND 14 MOL_ID: 4; COMPND 15 MOLECULE: HISTONE H2B 1.1; COMPND 16 CHAIN: D, H; COMPND 17 SYNONYM: H2B1.1; COMPND 18 ENGINEERED: YES; COMPND 19 MOL_ID: 5; COMPND 20 MOLECULE: WIDOM 601 DNA (145-MER, SENSE); COMPND 21 CHAIN: I; COMPND 22 ENGINEERED: YES; COMPND 23 MOL_ID: 6; COMPND 24 MOLECULE: WIDOM 601 DNA (145-MER, ANTISENSE); COMPND 25 CHAIN: J; COMPND 26 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CENPA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: XENOPUS LAEVIS; SOURCE 10 ORGANISM_COMMON: AFRICAN CLAWED FROG; SOURCE 11 ORGANISM_TAXID: 8355; SOURCE 12 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 14 MOL_ID: 3; SOURCE 15 ORGANISM_SCIENTIFIC: XENOPUS LAEVIS; SOURCE 16 ORGANISM_COMMON: AFRICAN CLAWED FROG; SOURCE 17 ORGANISM_TAXID: 8355; SOURCE 18 GENE: HIST1H2AJ, LOC494591; SOURCE 19 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 20 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 21 MOL_ID: 4; SOURCE 22 ORGANISM_SCIENTIFIC: XENOPUS LAEVIS; SOURCE 23 ORGANISM_COMMON: AFRICAN CLAWED FROG; SOURCE 24 ORGANISM_TAXID: 8355; SOURCE 25 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 26 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 27 MOL_ID: 5; SOURCE 28 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 29 ORGANISM_TAXID: 32630; SOURCE 30 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 31 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 32 MOL_ID: 6; SOURCE 33 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 34 ORGANISM_TAXID: 32630; SOURCE 35 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 36 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CENP-A NUCLEOSOME, PROTEIN-DNA COMPLEX, DNA BINDING PROTEIN EXPDTA ELECTRON MICROSCOPY AUTHOR R.BOOPATHI,R.DANEV,C.PETOSA,J.BEDNAR REVDAT 6 15-MAY-24 6TEM 1 REMARK REVDAT 5 10-JUN-20 6TEM 1 JRNL REVDAT 4 29-APR-20 6TEM 1 JRNL REVDAT 3 22-APR-20 6TEM 1 REMARK REVDAT 2 15-APR-20 6TEM 1 REMARK REVDAT 1 08-APR-20 6TEM 0 JRNL AUTH R.BOOPATHI,R.DANEV,M.KHOSHOUEI,S.KALE,S.NAHATA,L.RAMOS, JRNL AUTH 2 D.ANGELOV,S.DIMITROV,A.HAMICHE,C.PETOSA,J.BEDNAR JRNL TITL PHASE-PLATE CRYO-EM STRUCTURE OF THE WIDOM 601 CENP-A JRNL TITL 2 NUCLEOSOME CORE PARTICLE REVEALS DIFFERENTIAL FLEXIBILITY OF JRNL TITL 3 THE DNA ENDS. JRNL REF NUCLEIC ACIDS RES. V. 48 5735 2020 JRNL REFN ESSN 1362-4962 JRNL PMID 32313946 JRNL DOI 10.1093/NAR/GKAA246 REMARK 2 REMARK 2 RESOLUTION. 3.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : GAUTOMATCH, SERIALEM, GCTF, COOT, REMARK 3 RELION, RELION, RELION, RELION, PHENIX REMARK 3 RECONSTRUCTION SCHEMA : FOURIER SPACE REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : REAL REMARK 3 REFINEMENT PROTOCOL : FLEXIBLE FIT REMARK 3 REFINEMENT TARGET : CORRELATION COEFFICIENT REMARK 3 OVERALL ANISOTROPIC B VALUE : 38.200 REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.900 REMARK 3 NUMBER OF PARTICLES : 63968 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 6TEM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 12-NOV-19. REMARK 100 THE DEPOSITION ID IS D_1292105357. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : CENP-A NUCLEOSOME CORE PARTICLE REMARK 245 WITH 145 BASE PAIRS OF WIDOM REMARK 245 601 SEQUENCE; CENP-A NUCLEOSOME REMARK 245 CORE PARTICLE WITH 145 BASE REMARK 245 PAIRS OF WIDOM 601 SEQUENCE; REMARK 245 CENP-A NUCLEOSOME CORE PARTICLE REMARK 245 WITH 145 BASE PAIRS OF WIDOM REMARK 245 601 SEQUENCE; CENP-A NUCLEOSOME REMARK 245 CORE PARTICLE WITH 145 BASE REMARK 245 PAIRS OF WIDOM 601 SEQUENCE REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.40 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : 2608 REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : GATAN K2 SUMMIT (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 500.00 REMARK 245 MAXIMUM DEFOCUS (NM) : NULL REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : 2.70 REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 5000.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : 47000 REMARK 245 CALIBRATED MAGNIFICATION : 47000 REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DECAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DECAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 51760 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 68470 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -376.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F, G, H, I, J REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 PRO A 3 REMARK 465 ARG A 4 REMARK 465 ARG A 5 REMARK 465 ARG A 6 REMARK 465 SER A 7 REMARK 465 ARG A 8 REMARK 465 LYS A 9 REMARK 465 PRO A 10 REMARK 465 GLU A 11 REMARK 465 ALA A 12 REMARK 465 PRO A 13 REMARK 465 ARG A 14 REMARK 465 ARG A 15 REMARK 465 ARG A 16 REMARK 465 SER A 17 REMARK 465 PRO A 18 REMARK 465 SER A 19 REMARK 465 PRO A 20 REMARK 465 THR A 21 REMARK 465 PRO A 22 REMARK 465 THR A 23 REMARK 465 PRO A 24 REMARK 465 GLY A 25 REMARK 465 PRO A 26 REMARK 465 SER A 27 REMARK 465 ARG A 28 REMARK 465 ARG A 29 REMARK 465 GLY A 30 REMARK 465 PRO A 31 REMARK 465 SER A 32 REMARK 465 LEU A 33 REMARK 465 GLY A 34 REMARK 465 ALA A 35 REMARK 465 SER A 36 REMARK 465 SER A 37 REMARK 465 HIS A 38 REMARK 465 GLN A 39 REMARK 465 HIS A 40 REMARK 465 SER A 41 REMARK 465 ARG A 42 REMARK 465 ARG A 43 REMARK 465 ARG A 44 REMARK 465 GLN A 45 REMARK 465 GLY A 46 REMARK 465 LEU A 135 REMARK 465 GLU A 136 REMARK 465 GLU A 137 REMARK 465 GLY A 138 REMARK 465 LEU A 139 REMARK 465 GLY A 140 REMARK 465 MET B 0 REMARK 465 SER B 1 REMARK 465 GLY B 2 REMARK 465 ARG B 3 REMARK 465 GLY B 4 REMARK 465 LYS B 5 REMARK 465 GLY B 6 REMARK 465 GLY B 7 REMARK 465 LYS B 8 REMARK 465 GLY B 9 REMARK 465 LEU B 10 REMARK 465 GLY B 11 REMARK 465 LYS B 12 REMARK 465 GLY B 13 REMARK 465 GLY B 14 REMARK 465 ALA B 15 REMARK 465 LYS B 16 REMARK 465 ARG B 17 REMARK 465 HIS B 18 REMARK 465 ARG B 19 REMARK 465 LYS B 20 REMARK 465 VAL B 21 REMARK 465 LEU B 22 REMARK 465 ARG B 23 REMARK 465 SER C 1 REMARK 465 GLY C 2 REMARK 465 ARG C 3 REMARK 465 GLY C 4 REMARK 465 LYS C 5 REMARK 465 GLN C 6 REMARK 465 GLY C 7 REMARK 465 GLY C 8 REMARK 465 LYS C 9 REMARK 465 THR C 10 REMARK 465 ARG C 11 REMARK 465 ALA C 12 REMARK 465 LYS C 13 REMARK 465 LYS C 118 REMARK 465 LYS C 119 REMARK 465 THR C 120 REMARK 465 GLU C 121 REMARK 465 SER C 122 REMARK 465 SER C 123 REMARK 465 LYS C 124 REMARK 465 SER C 125 REMARK 465 ALA C 126 REMARK 465 LYS C 127 REMARK 465 SER C 128 REMARK 465 LYS C 129 REMARK 465 PRO D -2 REMARK 465 GLU D -1 REMARK 465 PRO D 0 REMARK 465 ALA D 1 REMARK 465 LYS D 2 REMARK 465 SER D 3 REMARK 465 ALA D 4 REMARK 465 PRO D 5 REMARK 465 ALA D 6 REMARK 465 PRO D 7 REMARK 465 LYS D 8 REMARK 465 LYS D 9 REMARK 465 GLY D 10 REMARK 465 SER D 11 REMARK 465 LYS D 12 REMARK 465 LYS D 13 REMARK 465 ALA D 14 REMARK 465 VAL D 15 REMARK 465 THR D 16 REMARK 465 LYS D 17 REMARK 465 THR D 18 REMARK 465 GLN D 19 REMARK 465 LYS D 20 REMARK 465 LYS D 21 REMARK 465 ASP D 22 REMARK 465 GLY D 23 REMARK 465 LYS D 24 REMARK 465 LYS D 25 REMARK 465 ARG D 26 REMARK 465 ARG D 27 REMARK 465 MET E 1 REMARK 465 GLY E 2 REMARK 465 PRO E 3 REMARK 465 ARG E 4 REMARK 465 ARG E 5 REMARK 465 ARG E 6 REMARK 465 SER E 7 REMARK 465 ARG E 8 REMARK 465 LYS E 9 REMARK 465 PRO E 10 REMARK 465 GLU E 11 REMARK 465 ALA E 12 REMARK 465 PRO E 13 REMARK 465 ARG E 14 REMARK 465 ARG E 15 REMARK 465 ARG E 16 REMARK 465 SER E 17 REMARK 465 PRO E 18 REMARK 465 SER E 19 REMARK 465 PRO E 20 REMARK 465 THR E 21 REMARK 465 PRO E 22 REMARK 465 THR E 23 REMARK 465 PRO E 24 REMARK 465 GLY E 25 REMARK 465 PRO E 26 REMARK 465 SER E 27 REMARK 465 ARG E 28 REMARK 465 ARG E 29 REMARK 465 GLY E 30 REMARK 465 PRO E 31 REMARK 465 SER E 32 REMARK 465 LEU E 33 REMARK 465 GLY E 34 REMARK 465 ALA E 35 REMARK 465 SER E 36 REMARK 465 SER E 37 REMARK 465 HIS E 38 REMARK 465 GLN E 39 REMARK 465 HIS E 40 REMARK 465 SER E 41 REMARK 465 ARG E 42 REMARK 465 ARG E 43 REMARK 465 ARG E 44 REMARK 465 GLN E 45 REMARK 465 GLY E 46 REMARK 465 GLU E 136 REMARK 465 GLU E 137 REMARK 465 GLY E 138 REMARK 465 LEU E 139 REMARK 465 GLY E 140 REMARK 465 MET F 0 REMARK 465 SER F 1 REMARK 465 GLY F 2 REMARK 465 ARG F 3 REMARK 465 GLY F 4 REMARK 465 LYS F 5 REMARK 465 GLY F 6 REMARK 465 GLY F 7 REMARK 465 LYS F 8 REMARK 465 GLY F 9 REMARK 465 LEU F 10 REMARK 465 GLY F 11 REMARK 465 LYS F 12 REMARK 465 GLY F 13 REMARK 465 GLY F 14 REMARK 465 ALA F 15 REMARK 465 LYS F 16 REMARK 465 ARG F 17 REMARK 465 HIS F 18 REMARK 465 ARG F 19 REMARK 465 LYS F 20 REMARK 465 VAL F 21 REMARK 465 LEU F 22 REMARK 465 ARG F 23 REMARK 465 ASP F 24 REMARK 465 SER G 1 REMARK 465 GLY G 2 REMARK 465 ARG G 3 REMARK 465 GLY G 4 REMARK 465 LYS G 5 REMARK 465 GLN G 6 REMARK 465 GLY G 7 REMARK 465 GLY G 8 REMARK 465 LYS G 9 REMARK 465 THR G 10 REMARK 465 ARG G 11 REMARK 465 ALA G 12 REMARK 465 LYS G 13 REMARK 465 PRO G 117 REMARK 465 LYS G 118 REMARK 465 LYS G 119 REMARK 465 THR G 120 REMARK 465 GLU G 121 REMARK 465 SER G 122 REMARK 465 SER G 123 REMARK 465 LYS G 124 REMARK 465 SER G 125 REMARK 465 ALA G 126 REMARK 465 LYS G 127 REMARK 465 SER G 128 REMARK 465 LYS G 129 REMARK 465 PRO H -2 REMARK 465 GLU H -1 REMARK 465 PRO H 0 REMARK 465 ALA H 1 REMARK 465 LYS H 2 REMARK 465 SER H 3 REMARK 465 ALA H 4 REMARK 465 PRO H 5 REMARK 465 ALA H 6 REMARK 465 PRO H 7 REMARK 465 LYS H 8 REMARK 465 LYS H 9 REMARK 465 GLY H 10 REMARK 465 SER H 11 REMARK 465 LYS H 12 REMARK 465 LYS H 13 REMARK 465 ALA H 14 REMARK 465 VAL H 15 REMARK 465 THR H 16 REMARK 465 LYS H 17 REMARK 465 THR H 18 REMARK 465 GLN H 19 REMARK 465 LYS H 20 REMARK 465 LYS H 21 REMARK 465 ASP H 22 REMARK 465 GLY H 23 REMARK 465 LYS H 24 REMARK 465 LYS H 25 REMARK 465 ARG H 26 REMARK 465 ARG H 27 REMARK 465 LYS H 28 REMARK 465 LYS H 122 REMARK 465 DT I -72 REMARK 465 DG I -71 REMARK 465 DG I -70 REMARK 465 DA I 61 REMARK 465 DT I 62 REMARK 465 DA I 63 REMARK 465 DT I 64 REMARK 465 DA I 65 REMARK 465 DC I 66 REMARK 465 DA I 67 REMARK 465 DT I 68 REMARK 465 DC I 69 REMARK 465 DC I 70 REMARK 465 DT I 71 REMARK 465 DG I 72 REMARK 465 DC J -72 REMARK 465 DA J -71 REMARK 465 DG J -70 REMARK 465 DG J -69 REMARK 465 DA J -68 REMARK 465 DT J -67 REMARK 465 DG J -66 REMARK 465 DT J -65 REMARK 465 DA J -64 REMARK 465 DT J -63 REMARK 465 DA J -62 REMARK 465 DT J -61 REMARK 465 DC J 70 REMARK 465 DC J 71 REMARK 465 DA J 72 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU E 114 CA - CB - CG ANGL. DEV. = 14.2 DEGREES REMARK 500 DA I -22 O4' - C1' - N9 ANGL. DEV. = 2.5 DEGREES REMARK 500 DC I -8 O4' - C1' - N1 ANGL. DEV. = 2.9 DEGREES REMARK 500 DT I 30 O4' - C1' - N1 ANGL. DEV. = 2.2 DEGREES REMARK 500 DG J -56 O4' - C1' - N9 ANGL. DEV. = 2.1 DEGREES REMARK 500 DG J -21 O4' - C1' - N9 ANGL. DEV. = 2.3 DEGREES REMARK 500 DT J 9 O4' - C1' - N1 ANGL. DEV. = 2.3 DEGREES REMARK 500 DT J 25 O4' - C1' - N1 ANGL. DEV. = 3.3 DEGREES REMARK 500 DT J 31 O4' - C1' - N1 ANGL. DEV. = 1.9 DEGREES REMARK 500 DC J 58 O4' - C1' - N1 ANGL. DEV. = 2.3 DEGREES REMARK 500 DT J 66 C3' - C2' - C1' ANGL. DEV. = -5.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 78 -159.79 -91.43 REMARK 500 THR A 120 -168.09 -74.37 REMARK 500 ARG B 95 50.91 -145.87 REMARK 500 ASN C 38 49.31 37.30 REMARK 500 SER D 84 31.56 -142.44 REMARK 500 PRO D 100 -169.19 -71.77 REMARK 500 ALA D 121 -166.63 -101.07 REMARK 500 HIS E 59 -169.16 -76.85 REMARK 500 PHE E 78 -157.81 -92.15 REMARK 500 THR E 120 -160.84 -78.66 REMARK 500 ARG F 95 38.98 -92.57 REMARK 500 ASN G 38 46.64 33.81 REMARK 500 PRO H 100 -169.45 -71.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-10822 RELATED DB: EMDB DBREF 6TEM A 1 140 UNP P49450 CENPA_HUMAN 1 140 DBREF 6TEM B 0 102 UNP P62799 H4_XENLA 1 103 DBREF 6TEM C 1 129 UNP Q6AZJ8 Q6AZJ8_XENLA 2 130 DBREF 6TEM D -2 122 UNP P02281 H2B11_XENLA 2 126 DBREF 6TEM E 1 140 UNP P49450 CENPA_HUMAN 1 140 DBREF 6TEM F 0 102 UNP P62799 H4_XENLA 1 103 DBREF 6TEM G 1 129 UNP Q6AZJ8 Q6AZJ8_XENLA 2 130 DBREF 6TEM H -2 122 UNP P02281 H2B11_XENLA 2 126 DBREF 6TEM I -72 72 PDB 6TEM 6TEM -72 72 DBREF 6TEM J -72 72 PDB 6TEM 6TEM -72 72 SEQRES 1 A 140 MET GLY PRO ARG ARG ARG SER ARG LYS PRO GLU ALA PRO SEQRES 2 A 140 ARG ARG ARG SER PRO SER PRO THR PRO THR PRO GLY PRO SEQRES 3 A 140 SER ARG ARG GLY PRO SER LEU GLY ALA SER SER HIS GLN SEQRES 4 A 140 HIS SER ARG ARG ARG GLN GLY TRP LEU LYS GLU ILE ARG SEQRES 5 A 140 LYS LEU GLN LYS SER THR HIS LEU LEU ILE ARG LYS LEU SEQRES 6 A 140 PRO PHE SER ARG LEU ALA ARG GLU ILE CYS VAL LYS PHE SEQRES 7 A 140 THR ARG GLY VAL ASP PHE ASN TRP GLN ALA GLN ALA LEU SEQRES 8 A 140 LEU ALA LEU GLN GLU ALA ALA GLU ALA PHE LEU VAL HIS SEQRES 9 A 140 LEU PHE GLU ASP ALA TYR LEU LEU THR LEU HIS ALA GLY SEQRES 10 A 140 ARG VAL THR LEU PHE PRO LYS ASP VAL GLN LEU ALA ARG SEQRES 11 A 140 ARG ILE ARG GLY LEU GLU GLU GLY LEU GLY SEQRES 1 B 103 MET SER GLY ARG GLY LYS GLY GLY LYS GLY LEU GLY LYS SEQRES 2 B 103 GLY GLY ALA LYS ARG HIS ARG LYS VAL LEU ARG ASP ASN SEQRES 3 B 103 ILE GLN GLY ILE THR LYS PRO ALA ILE ARG ARG LEU ALA SEQRES 4 B 103 ARG ARG GLY GLY VAL LYS ARG ILE SER GLY LEU ILE TYR SEQRES 5 B 103 GLU GLU THR ARG GLY VAL LEU LYS VAL PHE LEU GLU ASN SEQRES 6 B 103 VAL ILE ARG ASP ALA VAL THR TYR THR GLU HIS ALA LYS SEQRES 7 B 103 ARG LYS THR VAL THR ALA MET ASP VAL VAL TYR ALA LEU SEQRES 8 B 103 LYS ARG GLN GLY ARG THR LEU TYR GLY PHE GLY GLY SEQRES 1 C 129 SER GLY ARG GLY LYS GLN GLY GLY LYS THR ARG ALA LYS SEQRES 2 C 129 ALA LYS THR ARG SER SER ARG ALA GLY LEU GLN PHE PRO SEQRES 3 C 129 VAL GLY ARG VAL HIS ARG LEU LEU ARG LYS GLY ASN TYR SEQRES 4 C 129 ALA GLU ARG VAL GLY ALA GLY ALA PRO VAL TYR LEU ALA SEQRES 5 C 129 ALA VAL LEU GLU TYR LEU THR ALA GLU ILE LEU GLU LEU SEQRES 6 C 129 ALA GLY ASN ALA ALA ARG ASP ASN LYS LYS THR ARG ILE SEQRES 7 C 129 ILE PRO ARG HIS LEU GLN LEU ALA VAL ARG ASN ASP GLU SEQRES 8 C 129 GLU LEU ASN LYS LEU LEU GLY ARG VAL THR ILE ALA GLN SEQRES 9 C 129 GLY GLY VAL LEU PRO ASN ILE GLN SER VAL LEU LEU PRO SEQRES 10 C 129 LYS LYS THR GLU SER SER LYS SER ALA LYS SER LYS SEQRES 1 D 125 PRO GLU PRO ALA LYS SER ALA PRO ALA PRO LYS LYS GLY SEQRES 2 D 125 SER LYS LYS ALA VAL THR LYS THR GLN LYS LYS ASP GLY SEQRES 3 D 125 LYS LYS ARG ARG LYS SER ARG LYS GLU SER TYR ALA ILE SEQRES 4 D 125 TYR VAL TYR LYS VAL LEU LYS GLN VAL HIS PRO ASP THR SEQRES 5 D 125 GLY ILE SER SER LYS ALA MET SER ILE MET ASN SER PHE SEQRES 6 D 125 VAL ASN ASP VAL PHE GLU ARG ILE ALA GLY GLU ALA SER SEQRES 7 D 125 ARG LEU ALA HIS TYR ASN LYS ARG SER THR ILE THR SER SEQRES 8 D 125 ARG GLU ILE GLN THR ALA VAL ARG LEU LEU LEU PRO GLY SEQRES 9 D 125 GLU LEU ALA LYS HIS ALA VAL SER GLU GLY THR LYS ALA SEQRES 10 D 125 VAL THR LYS TYR THR SER ALA LYS SEQRES 1 E 140 MET GLY PRO ARG ARG ARG SER ARG LYS PRO GLU ALA PRO SEQRES 2 E 140 ARG ARG ARG SER PRO SER PRO THR PRO THR PRO GLY PRO SEQRES 3 E 140 SER ARG ARG GLY PRO SER LEU GLY ALA SER SER HIS GLN SEQRES 4 E 140 HIS SER ARG ARG ARG GLN GLY TRP LEU LYS GLU ILE ARG SEQRES 5 E 140 LYS LEU GLN LYS SER THR HIS LEU LEU ILE ARG LYS LEU SEQRES 6 E 140 PRO PHE SER ARG LEU ALA ARG GLU ILE CYS VAL LYS PHE SEQRES 7 E 140 THR ARG GLY VAL ASP PHE ASN TRP GLN ALA GLN ALA LEU SEQRES 8 E 140 LEU ALA LEU GLN GLU ALA ALA GLU ALA PHE LEU VAL HIS SEQRES 9 E 140 LEU PHE GLU ASP ALA TYR LEU LEU THR LEU HIS ALA GLY SEQRES 10 E 140 ARG VAL THR LEU PHE PRO LYS ASP VAL GLN LEU ALA ARG SEQRES 11 E 140 ARG ILE ARG GLY LEU GLU GLU GLY LEU GLY SEQRES 1 F 103 MET SER GLY ARG GLY LYS GLY GLY LYS GLY LEU GLY LYS SEQRES 2 F 103 GLY GLY ALA LYS ARG HIS ARG LYS VAL LEU ARG ASP ASN SEQRES 3 F 103 ILE GLN GLY ILE THR LYS PRO ALA ILE ARG ARG LEU ALA SEQRES 4 F 103 ARG ARG GLY GLY VAL LYS ARG ILE SER GLY LEU ILE TYR SEQRES 5 F 103 GLU GLU THR ARG GLY VAL LEU LYS VAL PHE LEU GLU ASN SEQRES 6 F 103 VAL ILE ARG ASP ALA VAL THR TYR THR GLU HIS ALA LYS SEQRES 7 F 103 ARG LYS THR VAL THR ALA MET ASP VAL VAL TYR ALA LEU SEQRES 8 F 103 LYS ARG GLN GLY ARG THR LEU TYR GLY PHE GLY GLY SEQRES 1 G 129 SER GLY ARG GLY LYS GLN GLY GLY LYS THR ARG ALA LYS SEQRES 2 G 129 ALA LYS THR ARG SER SER ARG ALA GLY LEU GLN PHE PRO SEQRES 3 G 129 VAL GLY ARG VAL HIS ARG LEU LEU ARG LYS GLY ASN TYR SEQRES 4 G 129 ALA GLU ARG VAL GLY ALA GLY ALA PRO VAL TYR LEU ALA SEQRES 5 G 129 ALA VAL LEU GLU TYR LEU THR ALA GLU ILE LEU GLU LEU SEQRES 6 G 129 ALA GLY ASN ALA ALA ARG ASP ASN LYS LYS THR ARG ILE SEQRES 7 G 129 ILE PRO ARG HIS LEU GLN LEU ALA VAL ARG ASN ASP GLU SEQRES 8 G 129 GLU LEU ASN LYS LEU LEU GLY ARG VAL THR ILE ALA GLN SEQRES 9 G 129 GLY GLY VAL LEU PRO ASN ILE GLN SER VAL LEU LEU PRO SEQRES 10 G 129 LYS LYS THR GLU SER SER LYS SER ALA LYS SER LYS SEQRES 1 H 125 PRO GLU PRO ALA LYS SER ALA PRO ALA PRO LYS LYS GLY SEQRES 2 H 125 SER LYS LYS ALA VAL THR LYS THR GLN LYS LYS ASP GLY SEQRES 3 H 125 LYS LYS ARG ARG LYS SER ARG LYS GLU SER TYR ALA ILE SEQRES 4 H 125 TYR VAL TYR LYS VAL LEU LYS GLN VAL HIS PRO ASP THR SEQRES 5 H 125 GLY ILE SER SER LYS ALA MET SER ILE MET ASN SER PHE SEQRES 6 H 125 VAL ASN ASP VAL PHE GLU ARG ILE ALA GLY GLU ALA SER SEQRES 7 H 125 ARG LEU ALA HIS TYR ASN LYS ARG SER THR ILE THR SER SEQRES 8 H 125 ARG GLU ILE GLN THR ALA VAL ARG LEU LEU LEU PRO GLY SEQRES 9 H 125 GLU LEU ALA LYS HIS ALA VAL SER GLU GLY THR LYS ALA SEQRES 10 H 125 VAL THR LYS TYR THR SER ALA LYS SEQRES 1 I 145 DT DG DG DA DG DA DA DT DC DC DC DG DG SEQRES 2 I 145 DT DG DC DC DG DA DG DG DC DC DG DC DT SEQRES 3 I 145 DC DA DA DT DT DG DG DT DC DG DT DA DG SEQRES 4 I 145 DA DC DA DG DC DT DC DT DA DG DC DA DC SEQRES 5 I 145 DC DG DC DT DT DA DA DA DC DG DC DA DC SEQRES 6 I 145 DG DT DA DC DG DC DG DC DT DG DT DC DC SEQRES 7 I 145 DC DC DC DG DC DG DT DT DT DT DA DA DC SEQRES 8 I 145 DC DG DC DC DA DA DG DG DG DG DA DT DT SEQRES 9 I 145 DA DC DT DC DC DC DT DA DG DT DC DT DC SEQRES 10 I 145 DC DA DG DG DC DA DC DG DT DG DT DC DA SEQRES 11 I 145 DG DA DT DA DT DA DT DA DC DA DT DC DC SEQRES 12 I 145 DT DG SEQRES 1 J 145 DC DA DG DG DA DT DG DT DA DT DA DT DA SEQRES 2 J 145 DT DC DT DG DA DC DA DC DG DT DG DC DC SEQRES 3 J 145 DT DG DG DA DG DA DC DT DA DG DG DG DA SEQRES 4 J 145 DG DT DA DA DT DC DC DC DC DT DT DG DG SEQRES 5 J 145 DC DG DG DT DT DA DA DA DA DC DG DC DG SEQRES 6 J 145 DG DG DG DG DA DC DA DG DC DG DC DG DT SEQRES 7 J 145 DA DC DG DT DG DC DG DT DT DT DA DA DG SEQRES 8 J 145 DC DG DG DT DG DC DT DA DG DA DG DC DT SEQRES 9 J 145 DG DT DC DT DA DC DG DA DC DC DA DA DT SEQRES 10 J 145 DT DG DA DG DC DG DG DC DC DT DC DG DG SEQRES 11 J 145 DC DA DC DC DG DG DG DA DT DT DC DT DC SEQRES 12 J 145 DC DA HELIX 1 AA1 TRP A 47 SER A 57 1 11 HELIX 2 AA2 LYS A 64 PHE A 78 1 15 HELIX 3 AA3 THR A 79 VAL A 82 5 4 HELIX 4 AA4 GLN A 89 GLY A 117 1 29 HELIX 5 AA5 PHE A 122 ARG A 133 1 12 HELIX 6 AA6 THR B 30 GLY B 42 1 13 HELIX 7 AA7 LEU B 49 ALA B 76 1 28 HELIX 8 AA8 ALA B 83 GLN B 93 1 11 HELIX 9 AA9 PRO C 26 GLY C 37 1 12 HELIX 10 AB1 GLY C 46 ASN C 73 1 28 HELIX 11 AB2 ILE C 79 ASN C 89 1 11 HELIX 12 AB3 GLU C 91 LEU C 97 1 7 HELIX 13 AB4 TYR D 34 HIS D 46 1 13 HELIX 14 AB5 SER D 52 ASN D 81 1 30 HELIX 15 AB6 THR D 87 LEU D 99 1 13 HELIX 16 AB7 GLU D 102 ALA D 121 1 20 HELIX 17 AB8 LEU E 48 SER E 57 1 10 HELIX 18 AB9 ARG E 63 PHE E 78 1 16 HELIX 19 AC1 THR E 79 VAL E 82 5 4 HELIX 20 AC2 GLN E 89 ALA E 116 1 28 HELIX 21 AC3 PHE E 122 ARG E 133 1 12 HELIX 22 AC4 THR F 30 GLY F 41 1 12 HELIX 23 AC5 LEU F 49 ALA F 76 1 28 HELIX 24 AC6 THR F 82 ARG F 92 1 11 HELIX 25 AC7 ARG G 17 GLY G 22 1 6 HELIX 26 AC8 VAL G 27 GLY G 37 1 11 HELIX 27 AC9 ALA G 45 ASN G 73 1 29 HELIX 28 AD1 ILE G 79 ASN G 89 1 11 HELIX 29 AD2 GLU G 91 LEU G 97 1 7 HELIX 30 AD3 TYR H 34 HIS H 46 1 13 HELIX 31 AD4 SER H 52 ASN H 81 1 30 HELIX 32 AD5 THR H 87 LEU H 99 1 13 HELIX 33 AD6 PRO H 100 SER H 120 1 21 SHEET 1 AA1 2 ASN A 85 TRP A 86 0 SHEET 2 AA1 2 THR B 80 VAL B 81 1 O VAL B 81 N ASN A 85 SHEET 1 AA2 2 LEU B 97 TYR B 98 0 SHEET 2 AA2 2 THR G 101 ILE G 102 1 O THR G 101 N TYR B 98 SHEET 1 AA3 2 ARG C 42 VAL C 43 0 SHEET 2 AA3 2 THR D 85 ILE D 86 1 O ILE D 86 N ARG C 42 SHEET 1 AA4 2 ARG C 77 ILE C 78 0 SHEET 2 AA4 2 GLY D 50 ILE D 51 1 O GLY D 50 N ILE C 78 SHEET 1 AA5 2 ASN E 85 TRP E 86 0 SHEET 2 AA5 2 THR F 80 VAL F 81 1 O VAL F 81 N ASN E 85 SHEET 1 AA6 2 ARG G 42 VAL G 43 0 SHEET 2 AA6 2 THR H 85 ILE H 86 1 O ILE H 86 N ARG G 42 SHEET 1 AA7 2 ARG G 77 ILE G 78 0 SHEET 2 AA7 2 GLY H 50 ILE H 51 1 O GLY H 50 N ILE G 78 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000