data_6TF0 # _entry.id 6TF0 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.333 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 6TF0 WWPDB D_1292105367 # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6TF0 _pdbx_database_status.recvd_initial_deposition_date 2019-11-12 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Huang, L.' 1 ? 'Lilley, D.M.J.' 2 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Rna _citation.journal_id_ASTM RNARFU _citation.journal_id_CSD 2122 _citation.journal_id_ISSN 1469-9001 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 26 _citation.language ? _citation.page_first 878 _citation.page_last 887 _citation.title 'Structure and ligand binding of the ADP-binding domain of the NAD+ riboswitch.' _citation.year 2020 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1261/rna.074898.120 _citation.pdbx_database_id_PubMed 32295864 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Huang, L.' 1 ? primary 'Wang, J.' 2 ? primary 'Lilley, D.M.J.' 3 0000-0001-6882-2818 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 6TF0 _cell.details ? _cell.formula_units_Z ? _cell.length_a 57.272 _cell.length_a_esd ? _cell.length_b 59.230 _cell.length_b_esd ? _cell.length_c 191.085 _cell.length_c_esd ? _cell.volume 648203.485 _cell.volume_esd ? _cell.Z_PDB 8 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6TF0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall 'I 2 2' _symmetry.space_group_name_H-M 'I 2 2 2' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'Chains: A' 16863.957 1 ? ? ? ? 2 non-polymer syn 'MAGNESIUM ION' 24.305 8 ? ? ? ? 3 non-polymer syn 'SODIUM ION' 22.990 2 ? ? ? ? 4 non-polymer syn '1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE' 665.441 1 ? ? ? ? 5 water nat water 18.015 25 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code 'GG(CBV)UUCAACAACCCCGUAGGUUGGGCCGAAAGGCAGCGAAUCUACUGGAGCC' _entity_poly.pdbx_seq_one_letter_code_can GGCUUCAACAACCCCGUAGGUUGGGCCGAAAGGCAGCGAAUCUACUGGAGCC _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 G n 1 3 CBV n 1 4 U n 1 5 U n 1 6 C n 1 7 A n 1 8 A n 1 9 C n 1 10 A n 1 11 A n 1 12 C n 1 13 C n 1 14 C n 1 15 C n 1 16 G n 1 17 U n 1 18 A n 1 19 G n 1 20 G n 1 21 U n 1 22 U n 1 23 G n 1 24 G n 1 25 G n 1 26 C n 1 27 C n 1 28 G n 1 29 A n 1 30 A n 1 31 A n 1 32 G n 1 33 G n 1 34 C n 1 35 A n 1 36 G n 1 37 C n 1 38 G n 1 39 A n 1 40 A n 1 41 U n 1 42 C n 1 43 U n 1 44 A n 1 45 C n 1 46 U n 1 47 G n 1 48 G n 1 49 A n 1 50 G n 1 51 C n 1 52 C n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 52 _pdbx_entity_src_syn.organism_scientific 'Candidatus Koribacter versatilis Ellin345' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 204669 _pdbx_entity_src_syn.details ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 6TF0 _struct_ref.pdbx_db_accession 6TF0 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 6TF0 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 52 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 6TF0 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 52 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 52 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 CBV 'RNA linking' n ;5-BROMOCYTIDINE 5'-(DIHYDROGEN PHOSPHATE) ; ? 'C9 H13 Br N3 O8 P' 402.093 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 NAI non-polymer . '1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE' NADH 'C21 H29 N7 O14 P2' 665.441 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6TF0 _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 5.02 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 75.5 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 6.6 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 280 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '0.2 M Potassium Chloride, 0.1 M Mg Acetate, 0.05 M Sodium Cacodylate pH 6.6, 10% w/v Polyethylene Glycol 3350 (30% PEG200)' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS EIGER2 XE 16M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2019-09-28 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9195 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'DIAMOND BEAMLINE I03' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.9195 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline I03 _diffrn_source.pdbx_synchrotron_site Diamond # _reflns.B_iso_Wilson_estimate 65.88 _reflns.entry_id 6TF0 _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.10 _reflns.d_resolution_low 32.11 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 36174 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I 1.2 _reflns.percent_possible_obs 98.81 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 6.6 _reflns.pdbx_Rmerge_I_obs 0.038 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 18.1 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all 0.016 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.80 _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 2.10 _reflns_shell.d_res_low 2.14 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 1.2 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 939 _reflns_shell.percent_possible_all ? _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 1.44 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all 0.59 _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.80 _reflns_shell.pdbx_CC_star ? _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean 83.13 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 6TF0 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.10 _refine.ls_d_res_low 32.11 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 36174 _refine.ls_number_reflns_R_free 1650 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 98.57 _refine.ls_percent_reflns_R_free 4.56 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2118 _refine.ls_R_factor_R_free 0.2577 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2100 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.34 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 37.5277 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.3171 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.details ? _refine_hist.d_res_high 2.10 _refine_hist.d_res_low 32.11 _refine_hist.number_atoms_solvent 25 _refine_hist.number_atoms_total 1176 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total ? _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent ? _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 1112 _refine_hist.pdbx_number_atoms_ligand 39 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.0092 ? 1275 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 1.6519 ? 1986 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.0718 ? 262 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.0138 ? 53 ? f_plane_restr ? ? 'X-RAY DIFFRACTION' ? 14.6775 ? 624 ? f_dihedral_angle_d ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 2.10 2.16 . . 132 2867 98.07 . . . 0.5052 . 0.4652 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.16 2.23 . . 163 2860 97.90 . . . 0.4230 . 0.4659 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.23 2.31 . . 158 2835 98.42 . . . 0.4149 . 0.3764 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.31 2.40 . . 156 2820 98.15 . . . 0.3700 . 0.3436 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.40 2.51 . . 153 2869 98.60 . . . 0.3233 . 0.3111 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.51 2.65 . . 120 2899 98.66 . . . 0.3967 . 0.3226 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.65 2.81 . . 139 2895 98.86 . . . 0.2996 . 0.3075 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.81 3.03 . . 164 2839 98.72 . . . 0.3683 . 0.2814 . . . . . . . . . . . 'X-RAY DIFFRACTION' 3.03 3.33 . . 133 2859 97.78 . . . 0.2915 . 0.2273 . . . . . . . . . . . 'X-RAY DIFFRACTION' 3.33 3.81 . . 130 2894 99.08 . . . 0.2246 . 0.2014 . . . . . . . . . . . 'X-RAY DIFFRACTION' 3.81 4.80 . . 106 2936 99.48 . . . 0.1770 . 0.1625 . . . . . . . . . . . 'X-RAY DIFFRACTION' 4.80 32.11 . . 96 2951 99.22 . . . 0.2192 . 0.1584 . . . . . . . . . . . # _struct.entry_id 6TF0 _struct.title 'Crystal structure of the ADP-binding domain of the NAD+ riboswitch with Nicotinamide adenine dinucleotide, reduced (NADH)' _struct.pdbx_descriptor ;RNA (5'-R(*GP*(CBV)P*GP*GP*GP*GP*AP*CP*GP*AP*CP*CP*CP*CP*GP*C)-3') ; _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6TF0 _struct_keywords.text 'RNA structure; tRNA-mimicking; X-ray crystallography, RNA' _struct_keywords.pdbx_keywords RNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 2 ? G N N 2 ? H N N 2 ? I N N 2 ? J N N 3 ? K N N 3 ? L N N 4 ? M N N 5 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A G 2 "O3'" ? ? ? 1_555 A CBV 3 P ? ? A G 2 A CBV 3 1_555 ? ? ? ? ? ? ? 1.597 ? ? covale2 covale one ? A CBV 3 "O3'" ? ? ? 1_555 A U 4 P ? ? A CBV 3 A U 4 1_555 ? ? ? ? ? ? ? 1.598 ? ? metalc1 metalc ? ? A A 8 OP2 ? ? ? 1_555 B MG . MG ? ? A A 8 A MG 101 1_555 ? ? ? ? ? ? ? 2.094 ? ? metalc2 metalc ? ? A C 9 OP2 ? ? ? 1_555 B MG . MG ? ? A C 9 A MG 101 1_555 ? ? ? ? ? ? ? 1.939 ? ? metalc3 metalc ? ? A A 11 OP2 ? ? ? 1_555 C MG . MG ? ? A A 11 A MG 102 2_655 ? ? ? ? ? ? ? 2.019 ? ? metalc4 metalc ? ? A C 15 O2 ? ? ? 1_555 J NA . NA ? ? A C 15 A NA 109 1_555 ? ? ? ? ? ? ? 2.532 ? ? metalc5 metalc ? ? A U 17 OP1 ? ? ? 1_555 C MG . MG ? ? A U 17 A MG 102 1_555 ? ? ? ? ? ? ? 2.073 ? ? metalc6 metalc ? ? A G 36 O6 ? ? ? 1_555 J NA . NA ? ? A G 36 A NA 109 1_555 ? ? ? ? ? ? ? 2.495 ? ? metalc7 metalc ? ? A G 47 O6 ? ? ? 1_555 D MG . MG ? ? A G 47 A MG 103 1_555 ? ? ? ? ? ? ? 2.249 ? ? metalc8 metalc ? ? B MG . MG ? ? ? 1_555 M HOH . O ? ? A MG 101 A HOH 208 1_555 ? ? ? ? ? ? ? 2.185 ? ? metalc9 metalc ? ? B MG . MG ? ? ? 1_555 M HOH . O ? ? A MG 101 A HOH 210 1_555 ? ? ? ? ? ? ? 2.059 ? ? metalc10 metalc ? ? B MG . MG ? ? ? 1_555 M HOH . O ? ? A MG 101 A HOH 213 1_555 ? ? ? ? ? ? ? 2.031 ? ? metalc11 metalc ? ? C MG . MG ? ? ? 1_555 M HOH . O ? ? A MG 102 A HOH 204 1_555 ? ? ? ? ? ? ? 1.966 ? ? metalc12 metalc ? ? C MG . MG ? ? ? 1_555 M HOH . O ? ? A MG 102 A HOH 209 2_655 ? ? ? ? ? ? ? 2.029 ? ? metalc13 metalc ? ? C MG . MG ? ? ? 1_555 M HOH . O ? ? A MG 102 A HOH 212 1_555 ? ? ? ? ? ? ? 2.019 ? ? metalc14 metalc ? ? C MG . MG ? ? ? 1_555 M HOH . O ? ? A MG 102 A HOH 215 2_655 ? ? ? ? ? ? ? 1.857 ? ? metalc15 metalc ? ? D MG . MG ? ? ? 1_555 M HOH . O ? ? A MG 103 A HOH 205 1_555 ? ? ? ? ? ? ? 2.381 ? ? metalc16 metalc ? ? D MG . MG ? ? ? 1_555 M HOH . O ? ? A MG 103 A HOH 211 1_555 ? ? ? ? ? ? ? 2.286 ? ? metalc17 metalc ? ? D MG . MG ? ? ? 1_555 M HOH . O ? ? A MG 103 A HOH 218 1_555 ? ? ? ? ? ? ? 2.193 ? ? metalc18 metalc ? ? D MG . MG ? ? ? 1_555 M HOH . O ? ? A MG 103 A HOH 221 1_555 ? ? ? ? ? ? ? 2.522 ? ? metalc19 metalc ? ? D MG . MG ? ? ? 1_555 M HOH . O ? ? A MG 103 A HOH 225 1_555 ? ? ? ? ? ? ? 2.311 ? ? metalc20 metalc ? ? E MG . MG ? ? ? 1_555 M HOH . O ? ? A MG 104 A HOH 201 1_555 ? ? ? ? ? ? ? 1.979 ? ? metalc21 metalc ? ? E MG . MG ? ? ? 1_555 M HOH . O ? ? A MG 104 A HOH 206 1_555 ? ? ? ? ? ? ? 2.311 ? ? metalc22 metalc ? ? E MG . MG ? ? ? 1_555 M HOH . O ? ? A MG 104 A HOH 217 7_545 ? ? ? ? ? ? ? 1.920 ? ? metalc23 metalc ? ? E MG . MG ? ? ? 1_555 M HOH . O ? ? A MG 104 A HOH 222 1_555 ? ? ? ? ? ? ? 2.373 ? ? metalc24 metalc ? ? E MG . MG ? ? ? 1_555 M HOH . O ? ? A MG 104 A HOH 224 1_555 ? ? ? ? ? ? ? 2.121 ? ? metalc25 metalc ? ? F MG . MG ? ? ? 1_555 L NAI . O2A ? ? A MG 105 A NAI 111 1_555 ? ? ? ? ? ? ? 2.085 ? ? metalc26 metalc ? ? F MG . MG ? ? ? 1_555 L NAI . O1N ? ? A MG 105 A NAI 111 1_555 ? ? ? ? ? ? ? 2.381 ? ? metalc27 metalc ? ? F MG . MG ? ? ? 1_555 M HOH . O ? ? A MG 105 A HOH 203 1_555 ? ? ? ? ? ? ? 1.818 ? ? metalc28 metalc ? ? F MG . MG ? ? ? 1_555 M HOH . O ? ? A MG 105 A HOH 207 1_555 ? ? ? ? ? ? ? 2.210 ? ? metalc29 metalc ? ? F MG . MG ? ? ? 1_555 M HOH . O ? ? A MG 105 A HOH 216 1_555 ? ? ? ? ? ? ? 2.088 ? ? metalc30 metalc ? ? H MG . MG ? ? ? 1_555 M HOH . O ? ? A MG 107 A HOH 202 1_555 ? ? ? ? ? ? ? 2.969 ? ? hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 A C 52 N3 ? ? A G 1 A C 52 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 1 N2 ? ? ? 1_555 A C 52 O2 ? ? A G 1 A C 52 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 1 O6 ? ? ? 1_555 A C 52 N4 ? ? A G 1 A C 52 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A G 2 N1 ? ? ? 1_555 A C 51 N3 ? ? A G 2 A C 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A G 2 N2 ? ? ? 1_555 A C 51 O2 ? ? A G 2 A C 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A G 2 O6 ? ? ? 1_555 A C 51 N4 ? ? A G 2 A C 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A CBV 3 N3 ? ? ? 1_555 A G 50 N1 ? ? A CBV 3 A G 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A CBV 3 N4 ? ? ? 1_555 A G 50 O6 ? ? A CBV 3 A G 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A CBV 3 O2 ? ? ? 1_555 A G 50 N2 ? ? A CBV 3 A G 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A U 4 N3 ? ? ? 1_555 A A 49 N1 ? ? A U 4 A A 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A U 4 O4 ? ? ? 1_555 A A 49 N6 ? ? A U 4 A A 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A U 5 N3 ? ? ? 1_555 A G 48 O6 ? ? A U 5 A G 48 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog13 hydrog ? ? A U 5 O2 ? ? ? 1_555 A G 48 N1 ? ? A U 5 A G 48 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog14 hydrog ? ? A C 6 N3 ? ? ? 1_555 A G 47 N1 ? ? A C 6 A G 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A C 6 N4 ? ? ? 1_555 A G 47 O6 ? ? A C 6 A G 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A C 6 O2 ? ? ? 1_555 A G 47 N2 ? ? A C 6 A G 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A A 7 N1 ? ? ? 1_555 A U 46 N3 ? ? A A 7 A U 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A A 7 N6 ? ? ? 1_555 A U 46 O4 ? ? A A 7 A U 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A C 13 N3 ? ? ? 1_555 A G 38 N1 ? ? A C 13 A G 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A C 13 N4 ? ? ? 1_555 A G 38 O6 ? ? A C 13 A G 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A C 13 O2 ? ? ? 1_555 A G 38 N2 ? ? A C 13 A G 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A C 14 N3 ? ? ? 1_555 A G 36 N1 ? ? A C 14 A G 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A C 14 N4 ? ? ? 1_555 A G 36 O6 ? ? A C 14 A G 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A C 14 O2 ? ? ? 1_555 A G 36 N2 ? ? A C 14 A G 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A G 16 N1 ? ? ? 1_555 A C 45 N3 ? ? A G 16 A C 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A G 16 N2 ? ? ? 1_555 A C 45 O2 ? ? A G 16 A C 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A G 16 O6 ? ? ? 1_555 A C 45 N4 ? ? A G 16 A C 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A U 17 N3 ? ? ? 1_555 A A 44 N1 ? ? A U 17 A A 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A U 17 O4 ? ? ? 1_555 A A 44 N6 ? ? A U 17 A A 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A A 18 N1 ? ? ? 1_555 A U 43 N3 ? ? A A 18 A U 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A A 18 N6 ? ? ? 1_555 A U 43 O4 ? ? A A 18 A U 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A G 19 N1 ? ? ? 1_555 A C 42 N3 ? ? A G 19 A C 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A G 19 N2 ? ? ? 1_555 A C 42 O2 ? ? A G 19 A C 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A G 19 O6 ? ? ? 1_555 A C 42 N4 ? ? A G 19 A C 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A G 20 N1 ? ? ? 1_555 A U 41 O2 ? ? A G 20 A U 41 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog36 hydrog ? ? A G 20 O6 ? ? ? 1_555 A U 41 N3 ? ? A G 20 A U 41 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog37 hydrog ? ? A U 21 N3 ? ? ? 1_555 A A 40 N1 ? ? A U 21 A A 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A U 21 O4 ? ? ? 1_555 A A 40 N6 ? ? A U 21 A A 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A U 22 N3 ? ? ? 1_555 A A 39 N1 ? ? A U 22 A A 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A U 22 O4 ? ? ? 1_555 A A 39 N6 ? ? A U 22 A A 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A G 23 N1 ? ? ? 1_555 A C 37 N3 ? ? A G 23 A C 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A G 23 N2 ? ? ? 1_555 A C 37 O2 ? ? A G 23 A C 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A G 23 O6 ? ? ? 1_555 A C 37 N4 ? ? A G 23 A C 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? A G 24 N1 ? ? ? 1_555 A A 35 N1 ? ? A G 24 A A 35 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog45 hydrog ? ? A G 24 O6 ? ? ? 1_555 A A 35 N6 ? ? A G 24 A A 35 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog46 hydrog ? ? A G 25 N1 ? ? ? 1_555 A C 34 N3 ? ? A G 25 A C 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? A G 25 N2 ? ? ? 1_555 A C 34 O2 ? ? A G 25 A C 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? A G 25 O6 ? ? ? 1_555 A C 34 N4 ? ? A G 25 A C 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? A C 26 N3 ? ? ? 1_555 A G 33 N1 ? ? A C 26 A G 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? A C 26 N4 ? ? ? 1_555 A G 33 O6 ? ? A C 26 A G 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? A C 26 O2 ? ? ? 1_555 A G 33 N2 ? ? A C 26 A G 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? A C 27 N3 ? ? ? 1_555 A G 32 N1 ? ? A C 27 A G 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? A C 27 N4 ? ? ? 1_555 A G 32 O6 ? ? A C 27 A G 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? A C 27 O2 ? ? ? 1_555 A G 32 N2 ? ? A C 27 A G 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? A G 28 N2 ? ? ? 1_555 A A 31 N7 ? ? A G 28 A A 31 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog56 hydrog ? ? A G 28 N3 ? ? ? 1_555 A A 31 N6 ? ? A G 28 A A 31 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A MG 101 ? 6 'binding site for residue MG A 101' AC2 Software A MG 102 ? 6 'binding site for residue MG A 102' AC3 Software A MG 103 ? 6 'binding site for residue MG A 103' AC4 Software A MG 104 ? 6 'binding site for residue MG A 104' AC5 Software A MG 105 ? 5 'binding site for residue MG A 105' AC6 Software A MG 106 ? 2 'binding site for residue MG A 106' AC7 Software A MG 107 ? 2 'binding site for residue MG A 107' AC8 Software A MG 108 ? 1 'binding site for residue MG A 108' AC9 Software A NA 109 ? 3 'binding site for residue NA A 109' AD1 Software A NAI 111 ? 8 'binding site for residue NAI A 111' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 A A 8 ? A A 8 . ? 1_555 ? 2 AC1 6 C A 9 ? C A 9 . ? 1_555 ? 3 AC1 6 A A 10 ? A A 10 . ? 1_555 ? 4 AC1 6 HOH M . ? HOH A 208 . ? 1_555 ? 5 AC1 6 HOH M . ? HOH A 210 . ? 1_555 ? 6 AC1 6 HOH M . ? HOH A 213 . ? 1_555 ? 7 AC2 6 A A 11 ? A A 11 . ? 2_655 ? 8 AC2 6 U A 17 ? U A 17 . ? 1_555 ? 9 AC2 6 HOH M . ? HOH A 204 . ? 1_555 ? 10 AC2 6 HOH M . ? HOH A 209 . ? 2_655 ? 11 AC2 6 HOH M . ? HOH A 212 . ? 1_555 ? 12 AC2 6 HOH M . ? HOH A 215 . ? 2_655 ? 13 AC3 6 G A 47 ? G A 47 . ? 1_555 ? 14 AC3 6 HOH M . ? HOH A 205 . ? 1_555 ? 15 AC3 6 HOH M . ? HOH A 211 . ? 1_555 ? 16 AC3 6 HOH M . ? HOH A 218 . ? 1_555 ? 17 AC3 6 HOH M . ? HOH A 221 . ? 1_555 ? 18 AC3 6 HOH M . ? HOH A 225 . ? 1_555 ? 19 AC4 6 G A 38 ? G A 38 . ? 1_555 ? 20 AC4 6 HOH M . ? HOH A 201 . ? 1_555 ? 21 AC4 6 HOH M . ? HOH A 206 . ? 1_555 ? 22 AC4 6 HOH M . ? HOH A 217 . ? 7_545 ? 23 AC4 6 HOH M . ? HOH A 222 . ? 1_555 ? 24 AC4 6 HOH M . ? HOH A 224 . ? 1_555 ? 25 AC5 5 A A 8 ? A A 8 . ? 1_555 ? 26 AC5 5 NAI L . ? NAI A 111 . ? 1_555 ? 27 AC5 5 HOH M . ? HOH A 203 . ? 1_555 ? 28 AC5 5 HOH M . ? HOH A 207 . ? 1_555 ? 29 AC5 5 HOH M . ? HOH A 216 . ? 1_555 ? 30 AC6 2 A A 7 ? A A 7 . ? 1_555 ? 31 AC6 2 G A 16 ? G A 16 . ? 1_555 ? 32 AC7 2 G A 23 ? G A 23 . ? 1_555 ? 33 AC7 2 HOH M . ? HOH A 202 . ? 1_555 ? 34 AC8 1 G A 32 ? G A 32 . ? 1_555 ? 35 AC9 3 A A 11 ? A A 11 . ? 2_655 ? 36 AC9 3 C A 15 ? C A 15 . ? 1_555 ? 37 AC9 3 G A 36 ? G A 36 . ? 1_555 ? 38 AD1 8 C A 6 ? C A 6 . ? 1_555 ? 39 AD1 8 A A 7 ? A A 7 . ? 1_555 ? 40 AD1 8 A A 8 ? A A 8 . ? 1_555 ? 41 AD1 8 G A 47 ? G A 47 . ? 1_555 ? 42 AD1 8 G A 48 ? G A 48 . ? 1_555 ? 43 AD1 8 MG F . ? MG A 105 . ? 1_555 ? 44 AD1 8 HOH M . ? HOH A 203 . ? 1_555 ? 45 AD1 8 HOH M . ? HOH A 216 . ? 1_555 ? # _atom_sites.entry_id 6TF0 _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.017461 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.016883 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.005233 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol _atom_type.scat_dispersion_real _atom_type.scat_dispersion_imag _atom_type.scat_Cromer_Mann_a1 _atom_type.scat_Cromer_Mann_a2 _atom_type.scat_Cromer_Mann_a3 _atom_type.scat_Cromer_Mann_a4 _atom_type.scat_Cromer_Mann_b1 _atom_type.scat_Cromer_Mann_b2 _atom_type.scat_Cromer_Mann_b3 _atom_type.scat_Cromer_Mann_b4 _atom_type.scat_Cromer_Mann_c _atom_type.scat_source _atom_type.scat_dispersion_source BR ? ? 25.79822 9.11301 ? ? 1.35700 25.34896 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? C ? ? 3.54356 2.42580 ? ? 25.62398 1.50364 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? H ? ? 0.51345 0.48472 ? ? 24.73122 6.32584 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? MG ? ? 9.41153 2.53737 ? ? 2.59044 63.03566 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? N ? ? 4.01032 2.96436 ? ? 19.97189 1.75589 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? NA ? ? 9.38062 1.54875 ? ? 3.38349 72.32734 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? O ? ? 4.49882 3.47563 ? ? 15.80542 1.70748 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? O1- ? ? 5.12366 3.84317 ? ? 3.49406 27.47979 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? P ? ? 9.51135 5.44231 ? ? 1.42069 35.72801 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 1 1 G G A . n A 1 2 G 2 2 2 G G A . n A 1 3 CBV 3 3 3 CBV CBV A . n A 1 4 U 4 4 4 U U A . n A 1 5 U 5 5 5 U U A . n A 1 6 C 6 6 6 C C A . n A 1 7 A 7 7 7 A A A . n A 1 8 A 8 8 8 A A A . n A 1 9 C 9 9 9 C C A . n A 1 10 A 10 10 10 A A A . n A 1 11 A 11 11 11 A A A . n A 1 12 C 12 12 12 C C A . n A 1 13 C 13 13 13 C C A . n A 1 14 C 14 14 14 C C A . n A 1 15 C 15 15 15 C C A . n A 1 16 G 16 16 16 G G A . n A 1 17 U 17 17 17 U U A . n A 1 18 A 18 18 18 A A A . n A 1 19 G 19 19 19 G G A . n A 1 20 G 20 20 20 G G A . n A 1 21 U 21 21 21 U U A . n A 1 22 U 22 22 22 U U A . n A 1 23 G 23 23 23 G G A . n A 1 24 G 24 24 24 G G A . n A 1 25 G 25 25 25 G G A . n A 1 26 C 26 26 26 C C A . n A 1 27 C 27 27 27 C C A . n A 1 28 G 28 28 28 G G A . n A 1 29 A 29 29 29 A A A . n A 1 30 A 30 30 30 A A A . n A 1 31 A 31 31 31 A A A . n A 1 32 G 32 32 32 G G A . n A 1 33 G 33 33 33 G G A . n A 1 34 C 34 34 34 C C A . n A 1 35 A 35 35 35 A A A . n A 1 36 G 36 36 36 G G A . n A 1 37 C 37 37 37 C C A . n A 1 38 G 38 38 38 G G A . n A 1 39 A 39 39 39 A A A . n A 1 40 A 40 40 40 A A A . n A 1 41 U 41 41 41 U U A . n A 1 42 C 42 42 42 C C A . n A 1 43 U 43 43 43 U U A . n A 1 44 A 44 44 44 A A A . n A 1 45 C 45 45 45 C C A . n A 1 46 U 46 46 46 U U A . n A 1 47 G 47 47 47 G G A . n A 1 48 G 48 48 48 G G A . n A 1 49 A 49 49 49 A A A . n A 1 50 G 50 50 50 G G A . n A 1 51 C 51 51 51 C C A . n A 1 52 C 52 52 52 C C A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG 1 101 1 MG MG A . C 2 MG 1 102 2 MG MG A . D 2 MG 1 103 3 MG MG A . E 2 MG 1 104 4 MG MG A . F 2 MG 1 105 5 MG MG A . G 2 MG 1 106 6 MG MG A . H 2 MG 1 107 7 MG MG A . I 2 MG 1 108 10 MG MG A . J 3 NA 1 109 1 NA NA A . K 3 NA 1 110 4 NA NA A . L 4 NAI 1 111 1 NAI NAI A . M 5 HOH 1 201 20 HOH HOH A . M 5 HOH 2 202 24 HOH HOH A . M 5 HOH 3 203 10 HOH HOH A . M 5 HOH 4 204 13 HOH HOH A . M 5 HOH 5 205 16 HOH HOH A . M 5 HOH 6 206 18 HOH HOH A . M 5 HOH 7 207 5 HOH HOH A . M 5 HOH 8 208 11 HOH HOH A . M 5 HOH 9 209 9 HOH HOH A . M 5 HOH 10 210 6 HOH HOH A . M 5 HOH 11 211 7 HOH HOH A . M 5 HOH 12 212 14 HOH HOH A . M 5 HOH 13 213 12 HOH HOH A . M 5 HOH 14 214 22 HOH HOH A . M 5 HOH 15 215 3 HOH HOH A . M 5 HOH 16 216 1 HOH HOH A . M 5 HOH 17 217 2 HOH HOH A . M 5 HOH 18 218 15 HOH HOH A . M 5 HOH 19 219 23 HOH HOH A . M 5 HOH 20 220 25 HOH HOH A . M 5 HOH 21 221 4 HOH HOH A . M 5 HOH 22 222 21 HOH HOH A . M 5 HOH 23 223 19 HOH HOH A . M 5 HOH 24 224 8 HOH HOH A . M 5 HOH 25 225 17 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1970 ? 1 MORE -72 ? 1 'SSA (A^2)' 9370 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OP2 ? A A 8 ? A A 8 ? 1_555 MG ? B MG . ? A MG 101 ? 1_555 OP2 ? A C 9 ? A C 9 ? 1_555 98.9 ? 2 OP2 ? A A 8 ? A A 8 ? 1_555 MG ? B MG . ? A MG 101 ? 1_555 O ? M HOH . ? A HOH 208 ? 1_555 93.2 ? 3 OP2 ? A C 9 ? A C 9 ? 1_555 MG ? B MG . ? A MG 101 ? 1_555 O ? M HOH . ? A HOH 208 ? 1_555 160.4 ? 4 OP2 ? A A 8 ? A A 8 ? 1_555 MG ? B MG . ? A MG 101 ? 1_555 O ? M HOH . ? A HOH 210 ? 1_555 86.8 ? 5 OP2 ? A C 9 ? A C 9 ? 1_555 MG ? B MG . ? A MG 101 ? 1_555 O ? M HOH . ? A HOH 210 ? 1_555 85.9 ? 6 O ? M HOH . ? A HOH 208 ? 1_555 MG ? B MG . ? A MG 101 ? 1_555 O ? M HOH . ? A HOH 210 ? 1_555 79.4 ? 7 OP2 ? A A 8 ? A A 8 ? 1_555 MG ? B MG . ? A MG 101 ? 1_555 O ? M HOH . ? A HOH 213 ? 1_555 167.2 ? 8 OP2 ? A C 9 ? A C 9 ? 1_555 MG ? B MG . ? A MG 101 ? 1_555 O ? M HOH . ? A HOH 213 ? 1_555 91.1 ? 9 O ? M HOH . ? A HOH 208 ? 1_555 MG ? B MG . ? A MG 101 ? 1_555 O ? M HOH . ? A HOH 213 ? 1_555 75.0 ? 10 O ? M HOH . ? A HOH 210 ? 1_555 MG ? B MG . ? A MG 101 ? 1_555 O ? M HOH . ? A HOH 213 ? 1_555 85.9 ? 11 OP2 ? A A 11 ? A A 11 ? 1_555 MG ? C MG . ? A MG 102 ? 2_655 OP1 ? A U 17 ? A U 17 ? 1_555 33.3 ? 12 OP2 ? A A 11 ? A A 11 ? 1_555 MG ? C MG . ? A MG 102 ? 2_655 O ? M HOH . ? A HOH 204 ? 1_555 24.9 ? 13 OP1 ? A U 17 ? A U 17 ? 1_555 MG ? C MG . ? A MG 102 ? 2_655 O ? M HOH . ? A HOH 204 ? 1_555 8.5 ? 14 OP2 ? A A 11 ? A A 11 ? 1_555 MG ? C MG . ? A MG 102 ? 2_655 O ? M HOH . ? A HOH 209 ? 2_655 43.3 ? 15 OP1 ? A U 17 ? A U 17 ? 1_555 MG ? C MG . ? A MG 102 ? 2_655 O ? M HOH . ? A HOH 209 ? 2_655 12.0 ? 16 O ? M HOH . ? A HOH 204 ? 1_555 MG ? C MG . ? A MG 102 ? 2_655 O ? M HOH . ? A HOH 209 ? 2_655 19.0 ? 17 OP2 ? A A 11 ? A A 11 ? 1_555 MG ? C MG . ? A MG 102 ? 2_655 O ? M HOH . ? A HOH 212 ? 1_555 37.6 ? 18 OP1 ? A U 17 ? A U 17 ? 1_555 MG ? C MG . ? A MG 102 ? 2_655 O ? M HOH . ? A HOH 212 ? 1_555 4.6 ? 19 O ? M HOH . ? A HOH 204 ? 1_555 MG ? C MG . ? A MG 102 ? 2_655 O ? M HOH . ? A HOH 212 ? 1_555 13.0 ? 20 O ? M HOH . ? A HOH 209 ? 2_655 MG ? C MG . ? A MG 102 ? 2_655 O ? M HOH . ? A HOH 212 ? 1_555 10.3 ? 21 OP2 ? A A 11 ? A A 11 ? 1_555 MG ? C MG . ? A MG 102 ? 2_655 O ? M HOH . ? A HOH 215 ? 2_655 32.1 ? 22 OP1 ? A U 17 ? A U 17 ? 1_555 MG ? C MG . ? A MG 102 ? 2_655 O ? M HOH . ? A HOH 215 ? 2_655 12.6 ? 23 O ? M HOH . ? A HOH 204 ? 1_555 MG ? C MG . ? A MG 102 ? 2_655 O ? M HOH . ? A HOH 215 ? 2_655 12.2 ? 24 O ? M HOH . ? A HOH 209 ? 2_655 MG ? C MG . ? A MG 102 ? 2_655 O ? M HOH . ? A HOH 215 ? 2_655 13.5 ? 25 O ? M HOH . ? A HOH 212 ? 1_555 MG ? C MG . ? A MG 102 ? 2_655 O ? M HOH . ? A HOH 215 ? 2_655 15.7 ? 26 O2 ? A C 15 ? A C 15 ? 1_555 NA ? J NA . ? A NA 109 ? 1_555 O6 ? A G 36 ? A G 36 ? 1_555 96.9 ? 27 O6 ? A G 47 ? A G 47 ? 1_555 MG ? D MG . ? A MG 103 ? 1_555 O ? M HOH . ? A HOH 205 ? 1_555 73.3 ? 28 O6 ? A G 47 ? A G 47 ? 1_555 MG ? D MG . ? A MG 103 ? 1_555 O ? M HOH . ? A HOH 211 ? 1_555 79.1 ? 29 O ? M HOH . ? A HOH 205 ? 1_555 MG ? D MG . ? A MG 103 ? 1_555 O ? M HOH . ? A HOH 211 ? 1_555 88.1 ? 30 O6 ? A G 47 ? A G 47 ? 1_555 MG ? D MG . ? A MG 103 ? 1_555 O ? M HOH . ? A HOH 218 ? 1_555 89.6 ? 31 O ? M HOH . ? A HOH 205 ? 1_555 MG ? D MG . ? A MG 103 ? 1_555 O ? M HOH . ? A HOH 218 ? 1_555 161.2 ? 32 O ? M HOH . ? A HOH 211 ? 1_555 MG ? D MG . ? A MG 103 ? 1_555 O ? M HOH . ? A HOH 218 ? 1_555 80.6 ? 33 O6 ? A G 47 ? A G 47 ? 1_555 MG ? D MG . ? A MG 103 ? 1_555 O ? M HOH . ? A HOH 221 ? 1_555 127.2 ? 34 O ? M HOH . ? A HOH 205 ? 1_555 MG ? D MG . ? A MG 103 ? 1_555 O ? M HOH . ? A HOH 221 ? 1_555 90.8 ? 35 O ? M HOH . ? A HOH 211 ? 1_555 MG ? D MG . ? A MG 103 ? 1_555 O ? M HOH . ? A HOH 221 ? 1_555 152.0 ? 36 O ? M HOH . ? A HOH 218 ? 1_555 MG ? D MG . ? A MG 103 ? 1_555 O ? M HOH . ? A HOH 221 ? 1_555 106.2 ? 37 O6 ? A G 47 ? A G 47 ? 1_555 MG ? D MG . ? A MG 103 ? 1_555 O ? M HOH . ? A HOH 225 ? 1_555 146.7 ? 38 O ? M HOH . ? A HOH 205 ? 1_555 MG ? D MG . ? A MG 103 ? 1_555 O ? M HOH . ? A HOH 225 ? 1_555 93.1 ? 39 O ? M HOH . ? A HOH 211 ? 1_555 MG ? D MG . ? A MG 103 ? 1_555 O ? M HOH . ? A HOH 225 ? 1_555 70.0 ? 40 O ? M HOH . ? A HOH 218 ? 1_555 MG ? D MG . ? A MG 103 ? 1_555 O ? M HOH . ? A HOH 225 ? 1_555 97.2 ? 41 O ? M HOH . ? A HOH 221 ? 1_555 MG ? D MG . ? A MG 103 ? 1_555 O ? M HOH . ? A HOH 225 ? 1_555 82.1 ? 42 O ? M HOH . ? A HOH 201 ? 1_555 MG ? E MG . ? A MG 104 ? 1_555 O ? M HOH . ? A HOH 206 ? 1_555 104.9 ? 43 O ? M HOH . ? A HOH 201 ? 1_555 MG ? E MG . ? A MG 104 ? 1_555 O ? M HOH . ? A HOH 217 ? 7_545 115.1 ? 44 O ? M HOH . ? A HOH 206 ? 1_555 MG ? E MG . ? A MG 104 ? 1_555 O ? M HOH . ? A HOH 217 ? 7_545 91.8 ? 45 O ? M HOH . ? A HOH 201 ? 1_555 MG ? E MG . ? A MG 104 ? 1_555 O ? M HOH . ? A HOH 222 ? 1_555 86.5 ? 46 O ? M HOH . ? A HOH 206 ? 1_555 MG ? E MG . ? A MG 104 ? 1_555 O ? M HOH . ? A HOH 222 ? 1_555 162.8 ? 47 O ? M HOH . ? A HOH 217 ? 7_545 MG ? E MG . ? A MG 104 ? 1_555 O ? M HOH . ? A HOH 222 ? 1_555 94.9 ? 48 O ? M HOH . ? A HOH 201 ? 1_555 MG ? E MG . ? A MG 104 ? 1_555 O ? M HOH . ? A HOH 224 ? 1_555 102.7 ? 49 O ? M HOH . ? A HOH 206 ? 1_555 MG ? E MG . ? A MG 104 ? 1_555 O ? M HOH . ? A HOH 224 ? 1_555 78.2 ? 50 O ? M HOH . ? A HOH 217 ? 7_545 MG ? E MG . ? A MG 104 ? 1_555 O ? M HOH . ? A HOH 224 ? 1_555 142.2 ? 51 O ? M HOH . ? A HOH 222 ? 1_555 MG ? E MG . ? A MG 104 ? 1_555 O ? M HOH . ? A HOH 224 ? 1_555 86.9 ? 52 O2A ? L NAI . ? A NAI 111 ? 1_555 MG ? F MG . ? A MG 105 ? 1_555 O1N ? L NAI . ? A NAI 111 ? 1_555 70.6 ? 53 O2A ? L NAI . ? A NAI 111 ? 1_555 MG ? F MG . ? A MG 105 ? 1_555 O ? M HOH . ? A HOH 203 ? 1_555 79.5 ? 54 O1N ? L NAI . ? A NAI 111 ? 1_555 MG ? F MG . ? A MG 105 ? 1_555 O ? M HOH . ? A HOH 203 ? 1_555 72.0 ? 55 O2A ? L NAI . ? A NAI 111 ? 1_555 MG ? F MG . ? A MG 105 ? 1_555 O ? M HOH . ? A HOH 207 ? 1_555 159.3 ? 56 O1N ? L NAI . ? A NAI 111 ? 1_555 MG ? F MG . ? A MG 105 ? 1_555 O ? M HOH . ? A HOH 207 ? 1_555 93.9 ? 57 O ? M HOH . ? A HOH 203 ? 1_555 MG ? F MG . ? A MG 105 ? 1_555 O ? M HOH . ? A HOH 207 ? 1_555 82.6 ? 58 O2A ? L NAI . ? A NAI 111 ? 1_555 MG ? F MG . ? A MG 105 ? 1_555 O ? M HOH . ? A HOH 216 ? 1_555 94.3 ? 59 O1N ? L NAI . ? A NAI 111 ? 1_555 MG ? F MG . ? A MG 105 ? 1_555 O ? M HOH . ? A HOH 216 ? 1_555 143.6 ? 60 O ? M HOH . ? A HOH 203 ? 1_555 MG ? F MG . ? A MG 105 ? 1_555 O ? M HOH . ? A HOH 216 ? 1_555 72.7 ? 61 O ? M HOH . ? A HOH 207 ? 1_555 MG ? F MG . ? A MG 105 ? 1_555 O ? M HOH . ? A HOH 216 ? 1_555 90.4 ? # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2020-09-23 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[1][1]_esd _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][2]_esd _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[1][3]_esd _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[2][2]_esd _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.T[2][3]_esd _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[3][3]_esd _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[1][1]_esd _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][2]_esd _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[1][3]_esd _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[2][2]_esd _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.L[2][3]_esd _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[3][3]_esd _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][1]_esd _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][2]_esd _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[1][3]_esd _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][1]_esd _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][2]_esd _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][3]_esd _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][1]_esd _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][2]_esd _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[3][3]_esd 1 'X-RAY DIFFRACTION' ? refined 16.0606243714 -1.68140544015 22.2190289195 0.470211970186 ? 0.0505328941762 ? 0.0405750530413 ? 0.68894104816 ? -0.0195678851129 ? 0.535300353808 ? 5.87500299987 ? -0.406368925766 ? 1.79898623027 ? 3.13664615623 ? -0.433985029564 ? 4.58382847991 ? 0.258387841074 ? 0.796265024191 ? -0.296046954452 ? -0.311067291743 ? 0.0172049419391 ? 0.376740054861 ? 0.0830778096058 ? -0.297575017796 ? -0.256747664817 ? 2 'X-RAY DIFFRACTION' ? refined 9.88152652594 10.5216437316 45.9524959742 0.806505194894 ? 0.0293287654127 ? 0.0638940890827 ? 0.864014735294 ? -0.107123663552 ? 0.764556181227 ? -0.0411265014649 ? -2.21774542794 ? -1.33264932888 ? 7.69998289712 ? 6.99789818767 ? 5.50845648042 ? 0.0102636735289 ? -0.348620340247 ? 0.648626508357 ? -0.195990012856 ? 0.098119979263 ? -0.310287222748 ? -0.567742110878 ? -0.138011578304 ? -0.02836920224 ? 3 'X-RAY DIFFRACTION' ? refined 11.1682034749 -1.70175130328 19.5584857813 0.505395236555 ? 0.088394329587 ? -0.00946765254054 ? 0.893925457637 ? -0.0096989005084 ? 0.622620472363 ? 3.68507111652 ? -0.0621451774049 ? 1.41579552413 ? 2.68145242149 ? -1.09221015429 ? 2.97447849201 ? 0.0957898025374 ? 0.558311910874 ? 0.0530617563692 ? -0.225702437728 ? 0.131758386703 ? 0.305263080849 ? -0.0463395464095 ? -0.630822301843 ? -0.219839374253 ? # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 1 'X-RAY DIFFRACTION' 1 ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 1 through 21 ) ; 2 'X-RAY DIFFRACTION' 2 ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 22 through 36 ) ; 3 'X-RAY DIFFRACTION' 3 ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 37 through 52 ) ; # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.17.1_3660 1 ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.17.1_3660 2 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? xia2 ? ? ? . 3 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? xia2 ? ? ? . 4 ? phasing ? ? ? ? ? ? ? ? ? ? ? AutoSol ? ? ? . 5 # _pdbx_entry_details.entry_id 6TF0 _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 "HO3'" A CBV 3 ? ? P A U 4 ? ? 0.95 2 1 OP1 A A 8 ? ? MG A MG 105 ? ? 1.57 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 "O2'" _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 G _pdbx_validate_symm_contact.auth_seq_id_1 2 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 "O2'" _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 G _pdbx_validate_symm_contact.auth_seq_id_2 2 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 2_555 _pdbx_validate_symm_contact.dist 2.13 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 C5 A C 6 ? ? C4 A C 6 ? ? N4 A C 6 ? ? 124.76 120.20 4.56 0.70 N 2 1 C2 A A 7 ? ? N3 A A 7 ? ? C4 A A 7 ? ? 113.72 110.60 3.12 0.50 N 3 1 C5 A A 8 ? ? N7 A A 8 ? ? C8 A A 8 ? ? 100.75 103.90 -3.15 0.50 N 4 1 C6 A C 15 ? ? N1 A C 15 ? ? C2 A C 15 ? ? 122.89 120.30 2.59 0.40 N 5 1 C2 A G 20 ? ? N3 A G 20 ? ? C4 A G 20 ? ? 108.73 111.90 -3.17 0.50 N 6 1 C5 A U 43 ? ? C6 A U 43 ? ? N1 A U 43 ? ? 119.29 122.70 -3.41 0.50 N 7 1 C8 A A 44 ? ? N9 A A 44 ? ? C4 A A 44 ? ? 108.40 105.80 2.60 0.40 N 8 1 N1 A U 46 ? ? C2 A U 46 ? ? O2 A U 46 ? ? 118.43 122.80 -4.37 0.70 N 9 1 N3 A U 46 ? ? C2 A U 46 ? ? O2 A U 46 ? ? 127.07 122.20 4.87 0.70 N 10 1 N1 A G 47 ? ? C6 A G 47 ? ? O6 A G 47 ? ? 116.28 119.90 -3.62 0.60 N # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 N 1 A NAI 111 ? O4D ? L NAI 1 O4D 2 1 N 1 A NAI 111 ? C3D ? L NAI 1 C3D 3 1 N 1 A NAI 111 ? O3D ? L NAI 1 O3D 4 1 N 1 A NAI 111 ? C2D ? L NAI 1 C2D 5 1 N 1 A NAI 111 ? O2D ? L NAI 1 O2D 6 1 N 1 A NAI 111 ? C1D ? L NAI 1 C1D 7 1 N 1 A NAI 111 ? N1N ? L NAI 1 N1N 8 1 N 1 A NAI 111 ? C2N ? L NAI 1 C2N 9 1 N 1 A NAI 111 ? C3N ? L NAI 1 C3N 10 1 N 1 A NAI 111 ? C7N ? L NAI 1 C7N 11 1 N 1 A NAI 111 ? O7N ? L NAI 1 O7N 12 1 N 1 A NAI 111 ? N7N ? L NAI 1 N7N 13 1 N 1 A NAI 111 ? C4N ? L NAI 1 C4N 14 1 N 1 A NAI 111 ? C5N ? L NAI 1 C5N 15 1 N 1 A NAI 111 ? C6N ? L NAI 1 C6N # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 6TF0 'double helix' 6TF0 'a-form double helix' 6TF0 tetraloop 6TF0 'bulge loop' 6TF0 'mismatched base pair' 6TF0 'internal loop' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 1 1_555 A C 52 1_555 -0.299 -0.181 -0.118 -5.979 -7.737 -1.036 1 A_G1:C52_A A 1 ? A 52 ? 19 1 1 A G 2 1_555 A C 51 1_555 -0.234 -0.184 -0.080 -5.289 -9.744 4.407 2 A_G2:C51_A A 2 ? A 51 ? 19 1 1 A CBV 3 1_555 A G 50 1_555 -0.411 0.039 0.040 0.704 -11.054 2.338 3 A_CBV3:G50_A A 3 ? A 50 ? 19 1 1 A U 4 1_555 A A 49 1_555 -0.120 -0.083 0.299 -0.447 -11.840 4.777 4 A_U4:A49_A A 4 ? A 49 ? 20 1 1 A U 5 1_555 A G 48 1_555 2.065 -0.653 0.111 5.974 -13.187 -0.654 5 A_U5:G48_A A 5 ? A 48 ? 28 1 1 A C 6 1_555 A G 47 1_555 0.191 0.012 0.092 9.281 -21.396 5.017 6 A_C6:G47_A A 6 ? A 47 ? 19 1 1 A A 7 1_555 A U 46 1_555 0.087 -0.025 0.200 1.123 -9.345 -2.954 7 A_A7:U46_A A 7 ? A 46 ? 20 1 1 A G 16 1_555 A C 45 1_555 -0.232 -0.151 -0.019 -12.129 -17.426 0.787 8 A_G16:C45_A A 16 ? A 45 ? 19 1 1 A U 17 1_555 A A 44 1_555 -0.054 -0.135 -0.057 -8.063 -14.233 2.579 9 A_U17:A44_A A 17 ? A 44 ? 20 1 1 A A 18 1_555 A U 43 1_555 0.042 0.024 -0.055 -7.029 -4.724 4.827 10 A_A18:U43_A A 18 ? A 43 ? 20 1 1 A G 19 1_555 A C 42 1_555 -0.264 -0.105 0.062 -0.253 -7.205 3.615 11 A_G19:C42_A A 19 ? A 42 ? 19 1 1 A G 20 1_555 A U 41 1_555 -2.047 -0.659 0.155 0.900 -7.333 -2.287 12 A_G20:U41_A A 20 ? A 41 ? 28 1 1 A U 21 1_555 A A 40 1_555 -0.209 -0.092 0.075 0.509 -9.198 2.145 13 A_U21:A40_A A 21 ? A 40 ? 20 1 1 A U 22 1_555 A A 39 1_555 -0.011 -0.172 0.116 -0.451 -9.552 9.048 14 A_U22:A39_A A 22 ? A 39 ? 20 1 1 A G 23 1_555 A C 37 1_555 -0.106 -0.102 0.009 1.190 -9.679 0.009 15 A_G23:C37_A A 23 ? A 37 ? 19 1 1 A G 24 1_555 A A 35 1_555 -0.060 1.505 -0.204 1.963 -2.969 -26.609 16 A_G24:A35_A A 24 ? A 35 ? 8 1 1 A G 25 1_555 A C 34 1_555 -0.022 -0.180 0.516 9.756 -13.537 0.540 17 A_G25:C34_A A 25 ? A 34 ? 19 1 1 A C 26 1_555 A G 33 1_555 0.245 -0.207 0.163 3.443 -10.639 3.428 18 A_C26:G33_A A 26 ? A 33 ? 19 1 1 A C 27 1_555 A G 32 1_555 0.265 -0.102 0.335 -2.572 3.074 3.052 19 A_C27:G32_A A 27 ? A 32 ? 19 1 1 A G 28 1_555 A A 31 1_555 7.096 -4.764 0.867 15.130 -0.479 -13.367 20 A_G28:A31_A A 28 ? A 31 ? 11 10 1 A C 13 1_555 A G 38 1_555 0.210 -0.141 -0.253 11.160 -7.778 0.833 21 A_C13:G38_A A 13 ? A 38 ? 19 1 1 A C 14 1_555 A G 36 1_555 0.214 -0.178 -0.192 2.275 3.629 -0.355 22 A_C14:G36_A A 14 ? A 36 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 1 1_555 A C 52 1_555 A G 2 1_555 A C 51 1_555 0.783 -2.188 3.170 2.442 8.457 30.287 -5.433 -1.037 2.535 15.773 -4.554 31.511 1 AA_G1G2:C51C52_AA A 1 ? A 52 ? A 2 ? A 51 ? 1 A G 2 1_555 A C 51 1_555 A CBV 3 1_555 A G 50 1_555 -0.021 -1.778 3.100 -0.639 4.180 27.454 -4.618 -0.096 2.803 8.743 1.336 27.771 2 AA_G2CBV3:G50C51_AA A 2 ? A 51 ? A 3 ? A 50 ? 1 A CBV 3 1_555 A G 50 1_555 A U 4 1_555 A A 49 1_555 0.000 -1.709 3.265 -3.255 5.494 30.840 -4.129 -0.580 2.910 10.193 6.039 31.478 3 AA_CBV3U4:A49G50_AA A 3 ? A 50 ? A 4 ? A 49 ? 1 A U 4 1_555 A A 49 1_555 A U 5 1_555 A G 48 1_555 -0.193 -1.212 3.135 0.736 3.161 40.078 -2.102 0.360 3.031 4.603 -1.071 40.204 4 AA_U4U5:G48A49_AA A 4 ? A 49 ? A 5 ? A 48 ? 1 A U 5 1_555 A G 48 1_555 A C 6 1_555 A G 47 1_555 0.133 -2.459 2.884 2.694 8.935 20.843 -8.562 0.369 1.701 23.251 -7.011 22.816 5 AA_U5C6:G47G48_AA A 5 ? A 48 ? A 6 ? A 47 ? 1 A C 6 1_555 A G 47 1_555 A A 7 1_555 A U 46 1_555 -0.980 -1.318 3.181 -1.871 16.276 36.459 -3.631 1.243 2.444 24.549 2.822 39.857 6 AA_C6A7:U46G47_AA A 6 ? A 47 ? A 7 ? A 46 ? 1 A A 7 1_555 A U 46 1_555 A G 16 1_555 A C 45 1_555 0.670 -2.481 3.491 6.454 10.065 32.835 -5.633 -0.158 2.716 17.114 -10.975 34.888 7 AA_A7G16:C45U46_AA A 7 ? A 46 ? A 16 ? A 45 ? 1 A G 16 1_555 A C 45 1_555 A U 17 1_555 A A 44 1_555 -0.566 -1.809 3.198 1.244 2.448 31.314 -3.776 1.266 3.027 4.525 -2.299 31.432 8 AA_G16U17:A44C45_AA A 16 ? A 45 ? A 17 ? A 44 ? 1 A U 17 1_555 A A 44 1_555 A A 18 1_555 A U 43 1_555 0.176 -0.973 3.227 0.242 9.886 30.404 -3.459 -0.278 2.783 18.254 -0.446 31.936 9 AA_U17A18:U43A44_AA A 17 ? A 44 ? A 18 ? A 43 ? 1 A A 18 1_555 A U 43 1_555 A G 19 1_555 A C 42 1_555 0.590 -1.499 3.154 1.061 7.043 26.710 -4.699 -1.000 2.699 14.911 -2.246 27.627 10 AA_A18G19:C42U43_AA A 18 ? A 43 ? A 19 ? A 42 ? 1 A G 19 1_555 A C 42 1_555 A G 20 1_555 A U 41 1_555 0.427 -2.372 2.987 -3.263 7.783 22.528 -7.665 -1.852 1.986 19.083 8.002 24.037 11 AA_G19G20:U41C42_AA A 19 ? A 42 ? A 20 ? A 41 ? 1 A G 20 1_555 A U 41 1_555 A U 21 1_555 A A 40 1_555 -0.733 -1.831 3.315 -2.494 3.552 37.928 -3.247 0.807 3.177 5.443 3.821 38.166 12 AA_G20U21:A40U41_AA A 20 ? A 41 ? A 21 ? A 40 ? 1 A U 21 1_555 A A 40 1_555 A U 22 1_555 A A 39 1_555 0.650 -1.080 3.260 1.005 6.881 35.225 -2.708 -0.916 3.019 11.235 -1.640 35.884 13 AA_U21U22:A39A40_AA A 21 ? A 40 ? A 22 ? A 39 ? 1 A U 22 1_555 A A 39 1_555 A G 23 1_555 A C 37 1_555 1.380 -1.010 3.155 0.994 12.658 41.109 -2.544 -1.793 2.772 17.529 -1.377 42.944 14 AA_U22G23:C37A39_AA A 22 ? A 39 ? A 23 ? A 37 ? 1 A G 23 1_555 A C 37 1_555 A G 24 1_555 A A 35 1_555 -0.417 -3.453 3.381 -1.831 -0.098 34.258 -5.839 0.409 3.407 -0.167 3.106 34.305 15 AA_G23G24:A35C37_AA A 23 ? A 37 ? A 24 ? A 35 ? 1 A G 24 1_555 A A 35 1_555 A G 25 1_555 A C 34 1_555 0.845 -1.755 2.963 -10.528 8.906 30.191 -4.269 -2.889 1.984 16.086 19.015 33.125 16 AA_G24G25:C34A35_AA A 24 ? A 35 ? A 25 ? A 34 ? 1 A G 25 1_555 A C 34 1_555 A C 26 1_555 A G 33 1_555 0.123 -1.717 3.427 -0.370 0.985 36.975 -2.844 -0.245 3.380 1.552 0.583 36.990 17 AA_G25C26:G33C34_AA A 25 ? A 34 ? A 26 ? A 33 ? 1 A C 26 1_555 A G 33 1_555 A C 27 1_555 A G 32 1_555 0.032 -2.079 3.341 -2.729 6.187 30.115 -5.064 -0.568 2.853 11.723 5.171 30.848 18 AA_C26C27:G32G33_AA A 26 ? A 33 ? A 27 ? A 32 ? 1 A C 27 1_555 A G 32 1_555 A G 28 1_555 A A 31 1_555 -2.222 -0.950 2.617 -0.818 3.877 48.443 -1.391 2.650 2.573 4.715 0.995 48.595 19 AA_C27G28:A31G32_AA A 27 ? A 32 ? A 28 ? A 31 ? 1 A C 13 1_555 A G 38 1_555 A C 14 1_555 A G 36 1_555 2.144 -1.589 3.456 -0.205 2.043 49.999 -2.033 -2.550 3.384 2.416 0.243 50.038 20 AA_C13C14:G36G38_AA A 13 ? A 38 ? A 14 ? A 36 ? # _pdbx_audit_support.funding_organization 'Cancer Research UK' _pdbx_audit_support.country 'United Kingdom' _pdbx_audit_support.grant_number A18604 _pdbx_audit_support.ordinal 1 # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id NAI _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id NAI _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'MAGNESIUM ION' MG 3 'SODIUM ION' NA 4 '1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE' NAI 5 water HOH # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? # _space_group.name_H-M_alt 'I 2 2 2' _space_group.name_Hall 'I 2 2' _space_group.IT_number 23 _space_group.crystal_system orthorhombic _space_group.id 1 # loop_ _space_group_symop.id _space_group_symop.operation_xyz 1 x,y,z 2 x,-y,-z 3 -x,y,-z 4 -x,-y,z 5 x+1/2,y+1/2,z+1/2 6 x+1/2,-y+1/2,-z+1/2 7 -x+1/2,y+1/2,-z+1/2 8 -x+1/2,-y+1/2,z+1/2 #