data_6TF1 # _entry.id 6TF1 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.383 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 6TF1 pdb_00006tf1 10.2210/pdb6tf1/pdb WWPDB D_1292105368 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2020-09-23 2 'Structure model' 1 1 2024-01-24 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 2 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' chem_comp_atom 2 2 'Structure model' chem_comp_bond 3 2 'Structure model' database_2 4 2 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_database_2.pdbx_DOI' 2 2 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6TF1 _pdbx_database_status.recvd_initial_deposition_date 2019-11-12 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Huang, L.' 1 ? 'Lilley, D.M.J.' 2 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Rna _citation.journal_id_ASTM RNARFU _citation.journal_id_CSD 2122 _citation.journal_id_ISSN 1469-9001 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 26 _citation.language ? _citation.page_first 878 _citation.page_last 887 _citation.title 'Structure and ligand binding of the ADP-binding domain of the NAD+ riboswitch.' _citation.year 2020 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1261/rna.074898.120 _citation.pdbx_database_id_PubMed 32295864 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Huang, L.' 1 ? primary 'Wang, J.' 2 ? primary 'Lilley, D.M.J.' 3 0000-0001-6882-2818 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'Chains: A' 16785.062 1 ? ? ? ? 2 non-polymer syn 'MAGNESIUM ION' 24.305 7 ? ? ? ? 3 non-polymer syn 'SODIUM ION' 22.990 1 ? ? ? ? 4 non-polymer syn "ADENOSINE-5'-DIPHOSPHATE" 427.201 1 ? ? ? ? 5 water nat water 18.015 18 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GGCUUCAACAACCCCGUAGGUUGGGCCGAAAGGCAGCGAAUCUACUGGAGCC _entity_poly.pdbx_seq_one_letter_code_can GGCUUCAACAACCCCGUAGGUUGGGCCGAAAGGCAGCGAAUCUACUGGAGCC _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'MAGNESIUM ION' MG 3 'SODIUM ION' NA 4 "ADENOSINE-5'-DIPHOSPHATE" ADP 5 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 G n 1 3 C n 1 4 U n 1 5 U n 1 6 C n 1 7 A n 1 8 A n 1 9 C n 1 10 A n 1 11 A n 1 12 C n 1 13 C n 1 14 C n 1 15 C n 1 16 G n 1 17 U n 1 18 A n 1 19 G n 1 20 G n 1 21 U n 1 22 U n 1 23 G n 1 24 G n 1 25 G n 1 26 C n 1 27 C n 1 28 G n 1 29 A n 1 30 A n 1 31 A n 1 32 G n 1 33 G n 1 34 C n 1 35 A n 1 36 G n 1 37 C n 1 38 G n 1 39 A n 1 40 A n 1 41 U n 1 42 C n 1 43 U n 1 44 A n 1 45 C n 1 46 U n 1 47 G n 1 48 G n 1 49 A n 1 50 G n 1 51 C n 1 52 C n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 52 _pdbx_entity_src_syn.organism_scientific 'Candidatus Koribacter versatilis Ellin345' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 204669 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 ADP non-polymer n "ADENOSINE-5'-DIPHOSPHATE" ? 'C10 H15 N5 O10 P2' 427.201 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 1 1 G G A . n A 1 2 G 2 2 2 G G A . n A 1 3 C 3 3 3 C C A . n A 1 4 U 4 4 4 U U A . n A 1 5 U 5 5 5 U U A . n A 1 6 C 6 6 6 C C A . n A 1 7 A 7 7 7 A A A . n A 1 8 A 8 8 8 A A A . n A 1 9 C 9 9 9 C C A . n A 1 10 A 10 10 10 A A A . n A 1 11 A 11 11 11 A A A . n A 1 12 C 12 12 12 C C A . n A 1 13 C 13 13 13 C C A . n A 1 14 C 14 14 14 C C A . n A 1 15 C 15 15 15 C C A . n A 1 16 G 16 16 16 G G A . n A 1 17 U 17 17 17 U U A . n A 1 18 A 18 18 18 A A A . n A 1 19 G 19 19 19 G G A . n A 1 20 G 20 20 20 G G A . n A 1 21 U 21 21 21 U U A . n A 1 22 U 22 22 22 U U A . n A 1 23 G 23 23 23 G G A . n A 1 24 G 24 24 24 G G A . n A 1 25 G 25 25 25 G G A . n A 1 26 C 26 26 26 C C A . n A 1 27 C 27 27 27 C C A . n A 1 28 G 28 28 28 G G A . n A 1 29 A 29 29 29 A A A . n A 1 30 A 30 30 30 A A A . n A 1 31 A 31 31 31 A A A . n A 1 32 G 32 32 32 G G A . n A 1 33 G 33 33 33 G G A . n A 1 34 C 34 34 34 C C A . n A 1 35 A 35 35 35 A A A . n A 1 36 G 36 36 36 G G A . n A 1 37 C 37 37 37 C C A . n A 1 38 G 38 38 38 G G A . n A 1 39 A 39 39 39 A A A . n A 1 40 A 40 40 40 A A A . n A 1 41 U 41 41 41 U U A . n A 1 42 C 42 42 42 C C A . n A 1 43 U 43 43 43 U U A . n A 1 44 A 44 44 44 A A A . n A 1 45 C 45 45 45 C C A . n A 1 46 U 46 46 46 U U A . n A 1 47 G 47 47 47 G G A . n A 1 48 G 48 48 48 G G A . n A 1 49 A 49 49 49 A A A . n A 1 50 G 50 50 50 G G A . n A 1 51 C 51 51 51 C C A . n A 1 52 C 52 52 52 C C A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG 1 101 1 MG MG A . C 2 MG 1 102 2 MG MG A . D 2 MG 1 103 3 MG MG A . E 2 MG 1 104 4 MG MG A . F 2 MG 1 105 5 MG MG A . G 2 MG 1 106 6 MG MG A . H 2 MG 1 107 7 MG MG A . I 3 NA 1 108 1 NA NA A . J 4 ADP 1 109 1 ADP ADP A . K 5 HOH 1 201 10 HOH HOH A . K 5 HOH 2 202 6 HOH HOH A . K 5 HOH 3 203 8 HOH HOH A . K 5 HOH 4 204 1 HOH HOH A . K 5 HOH 5 205 5 HOH HOH A . K 5 HOH 6 206 7 HOH HOH A . K 5 HOH 7 207 3 HOH HOH A . K 5 HOH 8 208 9 HOH HOH A . K 5 HOH 9 209 13 HOH HOH A . K 5 HOH 10 210 18 HOH HOH A . K 5 HOH 11 211 4 HOH HOH A . K 5 HOH 12 212 12 HOH HOH A . K 5 HOH 13 213 17 HOH HOH A . K 5 HOH 14 214 14 HOH HOH A . K 5 HOH 15 215 2 HOH HOH A . K 5 HOH 16 216 15 HOH HOH A . K 5 HOH 17 217 16 HOH HOH A . K 5 HOH 18 218 11 HOH HOH A . # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.17.1_3660 1 ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.17.1_3660 2 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? xia2 ? ? ? . 3 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? xia2 ? ? ? . 4 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 5 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 6TF1 _cell.details ? _cell.formula_units_Z ? _cell.length_a 57.585 _cell.length_a_esd ? _cell.length_b 59.014 _cell.length_b_esd ? _cell.length_c 190.587 _cell.length_c_esd ? _cell.volume 647675.841 _cell.volume_esd ? _cell.Z_PDB 8 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6TF1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall 'I 2 2' _symmetry.space_group_name_H-M 'I 2 2 2' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6TF1 _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 5.02 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 75.5 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 280 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '0.2 M Potassium Chloride, 0.1 M Mg Acetate, 0.05 M Sodium Cacodylate pH 7.0, 10% w/v Polyethylene Glycol 3350' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS3 6M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2019-10-20 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9186 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'DIAMOND BEAMLINE I24' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.9186 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline I24 _diffrn_source.pdbx_synchrotron_site Diamond # _reflns.B_iso_Wilson_estimate 69.65 _reflns.entry_id 6TF1 _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.23 _reflns.d_resolution_low 56.37 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 16012 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 98.6 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 5.3 _reflns.pdbx_Rmerge_I_obs 0.087 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 9.5 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all 0.042 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.97 _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 2.23 _reflns_shell.d_res_low 2.27 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 0.2 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 787 _reflns_shell.percent_possible_all 96.4 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 1.5 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all 1.0 _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.78 _reflns_shell.pdbx_CC_star ? _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean 77.57 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 6TF1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.40 _refine.ls_d_res_low 56.37 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 12553 _refine.ls_number_reflns_R_free 622 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 95.51 _refine.ls_percent_reflns_R_free 4.95 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2172 _refine.ls_R_factor_R_free 0.2447 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2157 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.33 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 6TF0 _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 37.7800 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.3598 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.details ? _refine_hist.d_res_high 2.40 _refine_hist.d_res_low 56.37 _refine_hist.number_atoms_solvent 18 _refine_hist.number_atoms_total 1164 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total ? _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent ? _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 1111 _refine_hist.pdbx_number_atoms_ligand 35 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.0080 ? 1272 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 1.6093 ? 1982 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.0633 ? 263 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.0093 ? 53 ? f_plane_restr ? ? 'X-RAY DIFFRACTION' ? 13.8411 ? 631 ? f_dihedral_angle_d ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 2.40 2.64 . . 157 2675 88.20 . . . 0.4406 . 0.4647 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.64 3.02 . . 162 2985 97.19 . . . 0.4188 . 0.3648 . . . . . . . . . . . 'X-RAY DIFFRACTION' 3.02 3.81 . . 143 3039 97.16 . . . 0.2739 . 0.2250 . . . . . . . . . . . 'X-RAY DIFFRACTION' 3.81 56.37 . . 160 3232 99.21 . . . 0.1857 . 0.1689 . . . . . . . . . . . # _struct.entry_id 6TF1 _struct.title 'Crystal structure of the ADP-binding domain of the NAD+ riboswitch with Adenosine diphosphate (ADP)' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6TF1 _struct_keywords.text 'RNA structure; tRNA-mimicking; X-ray crystallography, RNA' _struct_keywords.pdbx_keywords RNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 2 ? G N N 2 ? H N N 2 ? I N N 3 ? J N N 4 ? K N N 5 ? # _struct_ref.id 1 _struct_ref.db_name GB _struct_ref.db_code CP000360.1 _struct_ref.pdbx_db_accession 94549081 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code GGCUUCAACAACCCCGUAGGUUGGGCCGCAAGGCAGCGAAUCUACUGGAGCC _struct_ref.pdbx_align_begin 5127586 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 6TF1 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 52 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 94549081 _struct_ref_seq.db_align_beg 5127586 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 5127637 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 52 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 6TF1 _struct_ref_seq_dif.mon_id A _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 29 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name GB _struct_ref_seq_dif.pdbx_seq_db_accession_code 94549081 _struct_ref_seq_dif.db_mon_id C _struct_ref_seq_dif.pdbx_seq_db_seq_num 5127614 _struct_ref_seq_dif.details conflict _struct_ref_seq_dif.pdbx_auth_seq_num 29 _struct_ref_seq_dif.pdbx_ordinal 1 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1310 ? 1 MORE -62 ? 1 'SSA (A^2)' 9240 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A A 7 OP2 ? ? ? 1_555 H MG . MG ? ? A A 7 A MG 107 1_555 ? ? ? ? ? ? ? 2.316 ? ? metalc2 metalc ? ? A A 8 OP2 ? ? ? 1_555 C MG . MG ? ? A A 8 A MG 102 1_555 ? ? ? ? ? ? ? 1.959 ? ? metalc3 metalc ? ? A A 8 OP1 ? ? ? 1_555 G MG . MG ? ? A A 8 A MG 106 1_555 ? ? ? ? ? ? ? 2.155 ? ? metalc4 metalc ? ? A C 9 OP2 ? ? ? 1_555 C MG . MG ? ? A C 9 A MG 102 1_555 ? ? ? ? ? ? ? 2.025 ? ? metalc5 metalc ? ? A A 11 OP2 ? ? ? 1_555 B MG . MG ? ? A A 11 A MG 101 2_655 ? ? ? ? ? ? ? 2.334 ? ? metalc6 metalc ? ? A C 15 O2 ? ? ? 1_555 I NA . NA ? ? A C 15 A NA 108 1_555 ? ? ? ? ? ? ? 3.073 ? ? metalc7 metalc ? ? A U 17 OP1 ? ? ? 1_555 B MG . MG ? ? A U 17 A MG 101 1_555 ? ? ? ? ? ? ? 1.943 ? ? metalc8 metalc ? ? A G 19 O6 ? ? ? 1_555 F MG . MG ? ? A G 19 A MG 105 1_555 ? ? ? ? ? ? ? 2.997 ? ? metalc9 metalc ? ? A G 36 O6 ? ? ? 1_555 I NA . NA ? ? A G 36 A NA 108 1_555 ? ? ? ? ? ? ? 3.134 ? ? metalc10 metalc ? ? A G 47 O6 ? ? ? 1_555 D MG . MG ? ? A G 47 A MG 103 1_555 ? ? ? ? ? ? ? 2.264 ? ? metalc11 metalc ? ? B MG . MG ? ? ? 1_555 K HOH . O ? ? A MG 101 A HOH 205 1_555 ? ? ? ? ? ? ? 1.886 ? ? metalc12 metalc ? ? B MG . MG ? ? ? 1_555 K HOH . O ? ? A MG 101 A HOH 207 2_655 ? ? ? ? ? ? ? 2.015 ? ? metalc13 metalc ? ? B MG . MG ? ? ? 1_555 K HOH . O ? ? A MG 101 A HOH 211 2_655 ? ? ? ? ? ? ? 2.194 ? ? metalc14 metalc ? ? B MG . MG ? ? ? 1_555 K HOH . O ? ? A MG 101 A HOH 215 1_555 ? ? ? ? ? ? ? 1.948 ? ? metalc15 metalc ? ? C MG . MG ? ? ? 1_555 K HOH . O ? ? A MG 102 A HOH 202 1_555 ? ? ? ? ? ? ? 1.987 ? ? metalc16 metalc ? ? C MG . MG ? ? ? 1_555 K HOH . O ? ? A MG 102 A HOH 203 1_555 ? ? ? ? ? ? ? 2.157 ? ? metalc17 metalc ? ? C MG . MG ? ? ? 1_555 K HOH . O ? ? A MG 102 A HOH 206 1_555 ? ? ? ? ? ? ? 1.926 ? ? metalc18 metalc ? ? E MG . MG ? ? ? 1_555 K HOH . O ? ? A MG 104 A HOH 209 7_545 ? ? ? ? ? ? ? 2.072 ? ? metalc19 metalc ? ? E MG . MG ? ? ? 1_555 K HOH . O ? ? A MG 104 A HOH 212 1_555 ? ? ? ? ? ? ? 2.366 ? ? metalc20 metalc ? ? E MG . MG ? ? ? 1_555 K HOH . O ? ? A MG 104 A HOH 214 1_555 ? ? ? ? ? ? ? 2.441 ? ? metalc21 metalc ? ? E MG . MG ? ? ? 1_555 K HOH . O ? ? A MG 104 A HOH 216 1_555 ? ? ? ? ? ? ? 2.443 ? ? metalc22 metalc ? ? E MG . MG ? ? ? 1_555 K HOH . O ? ? A MG 104 A HOH 218 1_555 ? ? ? ? ? ? ? 2.341 ? ? metalc23 metalc ? ? G MG . MG ? ? ? 1_555 J ADP . O2B ? ? A MG 106 A ADP 109 1_555 ? ? ? ? ? ? ? 2.039 ? ? metalc24 metalc ? ? G MG . MG ? ? ? 1_555 J ADP . O2A ? ? A MG 106 A ADP 109 1_555 ? ? ? ? ? ? ? 2.645 ? ? metalc25 metalc ? ? G MG . MG ? ? ? 1_555 K HOH . O ? ? A MG 106 A HOH 204 1_555 ? ? ? ? ? ? ? 1.849 ? ? metalc26 metalc ? ? G MG . MG ? ? ? 1_555 K HOH . O ? ? A MG 106 A HOH 208 1_555 ? ? ? ? ? ? ? 2.130 ? ? metalc27 metalc ? ? G MG . MG ? ? ? 1_555 K HOH . O ? ? A MG 106 A HOH 210 1_555 ? ? ? ? ? ? ? 2.083 ? ? hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 A C 52 N3 ? ? A G 1 A C 52 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 1 N2 ? ? ? 1_555 A C 52 O2 ? ? A G 1 A C 52 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 1 O6 ? ? ? 1_555 A C 52 N4 ? ? A G 1 A C 52 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A G 2 N1 ? ? ? 1_555 A C 51 N3 ? ? A G 2 A C 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A G 2 N2 ? ? ? 1_555 A C 51 O2 ? ? A G 2 A C 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A G 2 O6 ? ? ? 1_555 A C 51 N4 ? ? A G 2 A C 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A C 3 N3 ? ? ? 1_555 A G 50 N1 ? ? A C 3 A G 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A C 3 N4 ? ? ? 1_555 A G 50 O6 ? ? A C 3 A G 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A C 3 O2 ? ? ? 1_555 A G 50 N2 ? ? A C 3 A G 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A U 4 N3 ? ? ? 1_555 A A 49 N1 ? ? A U 4 A A 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A U 4 O4 ? ? ? 1_555 A A 49 N6 ? ? A U 4 A A 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A U 5 N3 ? ? ? 1_555 A G 48 O6 ? ? A U 5 A G 48 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog13 hydrog ? ? A U 5 O2 ? ? ? 1_555 A G 48 N1 ? ? A U 5 A G 48 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog14 hydrog ? ? A C 6 N3 ? ? ? 1_555 A G 47 N1 ? ? A C 6 A G 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A C 6 N4 ? ? ? 1_555 A G 47 O6 ? ? A C 6 A G 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A C 6 O2 ? ? ? 1_555 A G 47 N2 ? ? A C 6 A G 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A A 7 N1 ? ? ? 1_555 A U 46 N3 ? ? A A 7 A U 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A A 7 N6 ? ? ? 1_555 A U 46 O4 ? ? A A 7 A U 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A C 13 N3 ? ? ? 1_555 A G 38 N1 ? ? A C 13 A G 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A C 13 N4 ? ? ? 1_555 A G 38 O6 ? ? A C 13 A G 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A C 13 O2 ? ? ? 1_555 A G 38 N2 ? ? A C 13 A G 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A C 14 N3 ? ? ? 1_555 A G 36 N1 ? ? A C 14 A G 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A C 14 N4 ? ? ? 1_555 A G 36 O6 ? ? A C 14 A G 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A C 14 O2 ? ? ? 1_555 A G 36 N2 ? ? A C 14 A G 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A G 16 N1 ? ? ? 1_555 A C 45 N3 ? ? A G 16 A C 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A G 16 N2 ? ? ? 1_555 A C 45 O2 ? ? A G 16 A C 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A G 16 O6 ? ? ? 1_555 A C 45 N4 ? ? A G 16 A C 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A U 17 N3 ? ? ? 1_555 A A 44 N1 ? ? A U 17 A A 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A U 17 O4 ? ? ? 1_555 A A 44 N6 ? ? A U 17 A A 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A A 18 N1 ? ? ? 1_555 A U 43 N3 ? ? A A 18 A U 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A A 18 N6 ? ? ? 1_555 A U 43 O4 ? ? A A 18 A U 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A G 19 N1 ? ? ? 1_555 A C 42 N3 ? ? A G 19 A C 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A G 19 N2 ? ? ? 1_555 A C 42 O2 ? ? A G 19 A C 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A G 19 O6 ? ? ? 1_555 A C 42 N4 ? ? A G 19 A C 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A G 20 N1 ? ? ? 1_555 A U 41 O2 ? ? A G 20 A U 41 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog36 hydrog ? ? A G 20 O6 ? ? ? 1_555 A U 41 N3 ? ? A G 20 A U 41 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog37 hydrog ? ? A U 21 N3 ? ? ? 1_555 A A 40 N1 ? ? A U 21 A A 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A U 21 O4 ? ? ? 1_555 A A 40 N6 ? ? A U 21 A A 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A U 22 N3 ? ? ? 1_555 A A 39 N1 ? ? A U 22 A A 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A U 22 O4 ? ? ? 1_555 A A 39 N6 ? ? A U 22 A A 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A G 23 N1 ? ? ? 1_555 A C 37 N3 ? ? A G 23 A C 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A G 23 N2 ? ? ? 1_555 A C 37 O2 ? ? A G 23 A C 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A G 23 O6 ? ? ? 1_555 A C 37 N4 ? ? A G 23 A C 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? A G 24 N1 ? ? ? 1_555 A A 35 N1 ? ? A G 24 A A 35 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog45 hydrog ? ? A G 24 O6 ? ? ? 1_555 A A 35 N6 ? ? A G 24 A A 35 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog46 hydrog ? ? A G 25 N1 ? ? ? 1_555 A C 34 N3 ? ? A G 25 A C 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? A G 25 N2 ? ? ? 1_555 A C 34 O2 ? ? A G 25 A C 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? A G 25 O6 ? ? ? 1_555 A C 34 N4 ? ? A G 25 A C 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? A C 26 N3 ? ? ? 1_555 A G 33 N1 ? ? A C 26 A G 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? A C 26 N4 ? ? ? 1_555 A G 33 O6 ? ? A C 26 A G 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? A C 26 O2 ? ? ? 1_555 A G 33 N2 ? ? A C 26 A G 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? A C 27 N3 ? ? ? 1_555 A G 32 N1 ? ? A C 27 A G 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? A C 27 N4 ? ? ? 1_555 A G 32 O6 ? ? A C 27 A G 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? A C 27 O2 ? ? ? 1_555 A G 32 N2 ? ? A C 27 A G 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? A G 28 N2 ? ? ? 1_555 A A 31 N7 ? ? A G 28 A A 31 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OP2 ? A A 8 ? A A 8 ? 1_555 MG ? C MG . ? A MG 102 ? 1_555 OP2 ? A C 9 ? A C 9 ? 1_555 89.9 ? 2 OP2 ? A A 8 ? A A 8 ? 1_555 MG ? C MG . ? A MG 102 ? 1_555 O ? K HOH . ? A HOH 202 ? 1_555 69.1 ? 3 OP2 ? A C 9 ? A C 9 ? 1_555 MG ? C MG . ? A MG 102 ? 1_555 O ? K HOH . ? A HOH 202 ? 1_555 84.1 ? 4 OP2 ? A A 8 ? A A 8 ? 1_555 MG ? C MG . ? A MG 102 ? 1_555 O ? K HOH . ? A HOH 203 ? 1_555 93.8 ? 5 OP2 ? A C 9 ? A C 9 ? 1_555 MG ? C MG . ? A MG 102 ? 1_555 O ? K HOH . ? A HOH 203 ? 1_555 158.0 ? 6 O ? K HOH . ? A HOH 202 ? 1_555 MG ? C MG . ? A MG 102 ? 1_555 O ? K HOH . ? A HOH 203 ? 1_555 77.0 ? 7 OP2 ? A A 8 ? A A 8 ? 1_555 MG ? C MG . ? A MG 102 ? 1_555 O ? K HOH . ? A HOH 206 ? 1_555 159.6 ? 8 OP2 ? A C 9 ? A C 9 ? 1_555 MG ? C MG . ? A MG 102 ? 1_555 O ? K HOH . ? A HOH 206 ? 1_555 80.7 ? 9 O ? K HOH . ? A HOH 202 ? 1_555 MG ? C MG . ? A MG 102 ? 1_555 O ? K HOH . ? A HOH 206 ? 1_555 91.9 ? 10 O ? K HOH . ? A HOH 203 ? 1_555 MG ? C MG . ? A MG 102 ? 1_555 O ? K HOH . ? A HOH 206 ? 1_555 88.6 ? 11 OP1 ? A A 8 ? A A 8 ? 1_555 MG ? G MG . ? A MG 106 ? 1_555 O2B ? J ADP . ? A ADP 109 ? 1_555 108.6 ? 12 OP1 ? A A 8 ? A A 8 ? 1_555 MG ? G MG . ? A MG 106 ? 1_555 O2A ? J ADP . ? A ADP 109 ? 1_555 110.7 ? 13 O2B ? J ADP . ? A ADP 109 ? 1_555 MG ? G MG . ? A MG 106 ? 1_555 O2A ? J ADP . ? A ADP 109 ? 1_555 92.9 ? 14 OP1 ? A A 8 ? A A 8 ? 1_555 MG ? G MG . ? A MG 106 ? 1_555 O ? K HOH . ? A HOH 204 ? 1_555 165.3 ? 15 O2B ? J ADP . ? A ADP 109 ? 1_555 MG ? G MG . ? A MG 106 ? 1_555 O ? K HOH . ? A HOH 204 ? 1_555 78.2 ? 16 O2A ? J ADP . ? A ADP 109 ? 1_555 MG ? G MG . ? A MG 106 ? 1_555 O ? K HOH . ? A HOH 204 ? 1_555 81.3 ? 17 OP1 ? A A 8 ? A A 8 ? 1_555 MG ? G MG . ? A MG 106 ? 1_555 O ? K HOH . ? A HOH 208 ? 1_555 90.1 ? 18 O2B ? J ADP . ? A ADP 109 ? 1_555 MG ? G MG . ? A MG 106 ? 1_555 O ? K HOH . ? A HOH 208 ? 1_555 160.3 ? 19 O2A ? J ADP . ? A ADP 109 ? 1_555 MG ? G MG . ? A MG 106 ? 1_555 O ? K HOH . ? A HOH 208 ? 1_555 85.8 ? 20 O ? K HOH . ? A HOH 204 ? 1_555 MG ? G MG . ? A MG 106 ? 1_555 O ? K HOH . ? A HOH 208 ? 1_555 82.2 ? 21 OP1 ? A A 8 ? A A 8 ? 1_555 MG ? G MG . ? A MG 106 ? 1_555 O ? K HOH . ? A HOH 210 ? 1_555 80.0 ? 22 O2B ? J ADP . ? A ADP 109 ? 1_555 MG ? G MG . ? A MG 106 ? 1_555 O ? K HOH . ? A HOH 210 ? 1_555 85.4 ? 23 O2A ? J ADP . ? A ADP 109 ? 1_555 MG ? G MG . ? A MG 106 ? 1_555 O ? K HOH . ? A HOH 210 ? 1_555 169.0 ? 24 O ? K HOH . ? A HOH 204 ? 1_555 MG ? G MG . ? A MG 106 ? 1_555 O ? K HOH . ? A HOH 210 ? 1_555 87.7 ? 25 O ? K HOH . ? A HOH 208 ? 1_555 MG ? G MG . ? A MG 106 ? 1_555 O ? K HOH . ? A HOH 210 ? 1_555 92.1 ? 26 OP2 ? A A 11 ? A A 11 ? 1_555 MG ? B MG . ? A MG 101 ? 2_655 OP1 ? A U 17 ? A U 17 ? 1_555 34.7 ? 27 OP2 ? A A 11 ? A A 11 ? 1_555 MG ? B MG . ? A MG 101 ? 2_655 O ? K HOH . ? A HOH 205 ? 1_555 37.2 ? 28 OP1 ? A U 17 ? A U 17 ? 1_555 MG ? B MG . ? A MG 101 ? 2_655 O ? K HOH . ? A HOH 205 ? 1_555 2.5 ? 29 OP2 ? A A 11 ? A A 11 ? 1_555 MG ? B MG . ? A MG 101 ? 2_655 O ? K HOH . ? A HOH 207 ? 2_655 25.6 ? 30 OP1 ? A U 17 ? A U 17 ? 1_555 MG ? B MG . ? A MG 101 ? 2_655 O ? K HOH . ? A HOH 207 ? 2_655 11.1 ? 31 O ? K HOH . ? A HOH 205 ? 1_555 MG ? B MG . ? A MG 101 ? 2_655 O ? K HOH . ? A HOH 207 ? 2_655 13.6 ? 32 OP2 ? A A 11 ? A A 11 ? 1_555 MG ? B MG . ? A MG 101 ? 2_655 O ? K HOH . ? A HOH 211 ? 2_655 44.2 ? 33 OP1 ? A U 17 ? A U 17 ? 1_555 MG ? B MG . ? A MG 101 ? 2_655 O ? K HOH . ? A HOH 211 ? 2_655 11.6 ? 34 O ? K HOH . ? A HOH 205 ? 1_555 MG ? B MG . ? A MG 101 ? 2_655 O ? K HOH . ? A HOH 211 ? 2_655 10.2 ? 35 O ? K HOH . ? A HOH 207 ? 2_655 MG ? B MG . ? A MG 101 ? 2_655 O ? K HOH . ? A HOH 211 ? 2_655 18.7 ? 36 OP2 ? A A 11 ? A A 11 ? 1_555 MG ? B MG . ? A MG 101 ? 2_655 O ? K HOH . ? A HOH 215 ? 1_555 34.1 ? 37 OP1 ? A U 17 ? A U 17 ? 1_555 MG ? B MG . ? A MG 101 ? 2_655 O ? K HOH . ? A HOH 215 ? 1_555 13.0 ? 38 O ? K HOH . ? A HOH 205 ? 1_555 MG ? B MG . ? A MG 101 ? 2_655 O ? K HOH . ? A HOH 215 ? 1_555 14.2 ? 39 O ? K HOH . ? A HOH 207 ? 2_655 MG ? B MG . ? A MG 101 ? 2_655 O ? K HOH . ? A HOH 215 ? 1_555 9.9 ? 40 O ? K HOH . ? A HOH 211 ? 2_655 MG ? B MG . ? A MG 101 ? 2_655 O ? K HOH . ? A HOH 215 ? 1_555 12.9 ? 41 O2 ? A C 15 ? A C 15 ? 1_555 NA ? I NA . ? A NA 108 ? 1_555 O6 ? A G 36 ? A G 36 ? 1_555 81.6 ? 42 O ? K HOH . ? A HOH 209 ? 7_545 MG ? E MG . ? A MG 104 ? 1_555 O ? K HOH . ? A HOH 212 ? 1_555 69.5 ? 43 O ? K HOH . ? A HOH 209 ? 7_545 MG ? E MG . ? A MG 104 ? 1_555 O ? K HOH . ? A HOH 214 ? 1_555 69.9 ? 44 O ? K HOH . ? A HOH 212 ? 1_555 MG ? E MG . ? A MG 104 ? 1_555 O ? K HOH . ? A HOH 214 ? 1_555 67.7 ? 45 O ? K HOH . ? A HOH 209 ? 7_545 MG ? E MG . ? A MG 104 ? 1_555 O ? K HOH . ? A HOH 216 ? 1_555 100.8 ? 46 O ? K HOH . ? A HOH 212 ? 1_555 MG ? E MG . ? A MG 104 ? 1_555 O ? K HOH . ? A HOH 216 ? 1_555 64.8 ? 47 O ? K HOH . ? A HOH 214 ? 1_555 MG ? E MG . ? A MG 104 ? 1_555 O ? K HOH . ? A HOH 216 ? 1_555 131.7 ? 48 O ? K HOH . ? A HOH 209 ? 7_545 MG ? E MG . ? A MG 104 ? 1_555 O ? K HOH . ? A HOH 218 ? 1_555 123.9 ? 49 O ? K HOH . ? A HOH 212 ? 1_555 MG ? E MG . ? A MG 104 ? 1_555 O ? K HOH . ? A HOH 218 ? 1_555 71.3 ? 50 O ? K HOH . ? A HOH 214 ? 1_555 MG ? E MG . ? A MG 104 ? 1_555 O ? K HOH . ? A HOH 218 ? 1_555 58.8 ? 51 O ? K HOH . ? A HOH 216 ? 1_555 MG ? E MG . ? A MG 104 ? 1_555 O ? K HOH . ? A HOH 218 ? 1_555 97.1 ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A MG 101 ? 6 'binding site for residue MG A 101' AC2 Software A MG 102 ? 6 'binding site for residue MG A 102' AC3 Software A MG 103 ? 1 'binding site for residue MG A 103' AC4 Software A MG 104 ? 5 'binding site for residue MG A 104' AC5 Software A MG 105 ? 3 'binding site for residue MG A 105' AC6 Software A MG 106 ? 5 'binding site for residue MG A 106' AC7 Software A MG 107 ? 1 'binding site for residue MG A 107' AC8 Software A NA 108 ? 3 'binding site for residue NA A 108' AC9 Software A ADP 109 ? 9 'binding site for residue ADP A 109' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 A A 11 ? A A 11 . ? 2_655 ? 2 AC1 6 U A 17 ? U A 17 . ? 1_555 ? 3 AC1 6 HOH K . ? HOH A 205 . ? 1_555 ? 4 AC1 6 HOH K . ? HOH A 207 . ? 2_655 ? 5 AC1 6 HOH K . ? HOH A 211 . ? 2_655 ? 6 AC1 6 HOH K . ? HOH A 215 . ? 1_555 ? 7 AC2 6 A A 8 ? A A 8 . ? 1_555 ? 8 AC2 6 C A 9 ? C A 9 . ? 1_555 ? 9 AC2 6 A A 10 ? A A 10 . ? 1_555 ? 10 AC2 6 HOH K . ? HOH A 202 . ? 1_555 ? 11 AC2 6 HOH K . ? HOH A 203 . ? 1_555 ? 12 AC2 6 HOH K . ? HOH A 206 . ? 1_555 ? 13 AC3 1 G A 47 ? G A 47 . ? 1_555 ? 14 AC4 5 HOH K . ? HOH A 209 . ? 7_545 ? 15 AC4 5 HOH K . ? HOH A 212 . ? 1_555 ? 16 AC4 5 HOH K . ? HOH A 214 . ? 1_555 ? 17 AC4 5 HOH K . ? HOH A 216 . ? 1_555 ? 18 AC4 5 HOH K . ? HOH A 218 . ? 1_555 ? 19 AC5 3 G A 19 ? G A 19 . ? 1_555 ? 20 AC5 3 G A 20 ? G A 20 . ? 1_555 ? 21 AC5 3 U A 41 ? U A 41 . ? 1_555 ? 22 AC6 5 A A 8 ? A A 8 . ? 1_555 ? 23 AC6 5 ADP J . ? ADP A 109 . ? 1_555 ? 24 AC6 5 HOH K . ? HOH A 204 . ? 1_555 ? 25 AC6 5 HOH K . ? HOH A 208 . ? 1_555 ? 26 AC6 5 HOH K . ? HOH A 210 . ? 1_555 ? 27 AC7 1 A A 7 ? A A 7 . ? 1_555 ? 28 AC8 3 A A 11 ? A A 11 . ? 2_655 ? 29 AC8 3 C A 15 ? C A 15 . ? 1_555 ? 30 AC8 3 G A 36 ? G A 36 . ? 1_555 ? 31 AC9 9 C A 6 ? C A 6 . ? 1_555 ? 32 AC9 9 A A 7 ? A A 7 . ? 1_555 ? 33 AC9 9 A A 8 ? A A 8 . ? 1_555 ? 34 AC9 9 G A 47 ? G A 47 . ? 1_555 ? 35 AC9 9 G A 48 ? G A 48 . ? 1_555 ? 36 AC9 9 MG G . ? MG A 106 . ? 1_555 ? 37 AC9 9 HOH K . ? HOH A 201 . ? 1_555 ? 38 AC9 9 HOH K . ? HOH A 204 . ? 1_555 ? 39 AC9 9 HOH K . ? HOH A 210 . ? 1_555 ? # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 OP1 _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 A _pdbx_validate_close_contact.auth_seq_id_1 7 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 201 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 1.87 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 "O2'" _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 C _pdbx_validate_symm_contact.auth_seq_id_1 52 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 "O2'" _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 C _pdbx_validate_symm_contact.auth_seq_id_2 52 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 3_555 _pdbx_validate_symm_contact.dist 1.75 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 N7 A A 10 ? ? C8 A A 10 ? ? N9 A A 10 ? ? 110.63 113.80 -3.17 0.50 N 2 1 C4 A C 15 ? ? C5 A C 15 ? ? C6 A C 15 ? ? 120.93 117.40 3.53 0.50 N 3 1 N3 A G 23 ? ? C4 A G 23 ? ? C5 A G 23 ? ? 131.75 128.60 3.15 0.50 N 4 1 C8 A G 47 ? ? N9 A G 47 ? ? C4 A G 47 ? ? 103.63 106.40 -2.77 0.40 N 5 1 N9 A G 47 ? ? C4 A G 47 ? ? C5 A G 47 ? ? 108.57 105.40 3.17 0.40 N 6 1 N1 A G 48 ? ? C6 A G 48 ? ? O6 A G 48 ? ? 123.71 119.90 3.81 0.60 N # loop_ _space_group_symop.id _space_group_symop.operation_xyz 1 x,y,z 2 x,-y,-z 3 -x,y,-z 4 -x,-y,z 5 x+1/2,y+1/2,z+1/2 6 x+1/2,-y+1/2,-z+1/2 7 -x+1/2,y+1/2,-z+1/2 8 -x+1/2,-y+1/2,z+1/2 # _pdbx_entry_details.entry_id 6TF1 _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 ADP PB P N N 38 ADP O1B O N N 39 ADP O2B O N N 40 ADP O3B O N N 41 ADP PA P N S 42 ADP O1A O N N 43 ADP O2A O N N 44 ADP O3A O N N 45 ADP "O5'" O N N 46 ADP "C5'" C N N 47 ADP "C4'" C N R 48 ADP "O4'" O N N 49 ADP "C3'" C N S 50 ADP "O3'" O N N 51 ADP "C2'" C N R 52 ADP "O2'" O N N 53 ADP "C1'" C N R 54 ADP N9 N Y N 55 ADP C8 C Y N 56 ADP N7 N Y N 57 ADP C5 C Y N 58 ADP C6 C Y N 59 ADP N6 N N N 60 ADP N1 N Y N 61 ADP C2 C Y N 62 ADP N3 N Y N 63 ADP C4 C Y N 64 ADP HOB2 H N N 65 ADP HOB3 H N N 66 ADP HOA2 H N N 67 ADP "H5'1" H N N 68 ADP "H5'2" H N N 69 ADP "H4'" H N N 70 ADP "H3'" H N N 71 ADP "HO3'" H N N 72 ADP "H2'" H N N 73 ADP "HO2'" H N N 74 ADP "H1'" H N N 75 ADP H8 H N N 76 ADP HN61 H N N 77 ADP HN62 H N N 78 ADP H2 H N N 79 C OP3 O N N 80 C P P N N 81 C OP1 O N N 82 C OP2 O N N 83 C "O5'" O N N 84 C "C5'" C N N 85 C "C4'" C N R 86 C "O4'" O N N 87 C "C3'" C N S 88 C "O3'" O N N 89 C "C2'" C N R 90 C "O2'" O N N 91 C "C1'" C N R 92 C N1 N N N 93 C C2 C N N 94 C O2 O N N 95 C N3 N N N 96 C C4 C N N 97 C N4 N N N 98 C C5 C N N 99 C C6 C N N 100 C HOP3 H N N 101 C HOP2 H N N 102 C "H5'" H N N 103 C "H5''" H N N 104 C "H4'" H N N 105 C "H3'" H N N 106 C "HO3'" H N N 107 C "H2'" H N N 108 C "HO2'" H N N 109 C "H1'" H N N 110 C H41 H N N 111 C H42 H N N 112 C H5 H N N 113 C H6 H N N 114 G OP3 O N N 115 G P P N N 116 G OP1 O N N 117 G OP2 O N N 118 G "O5'" O N N 119 G "C5'" C N N 120 G "C4'" C N R 121 G "O4'" O N N 122 G "C3'" C N S 123 G "O3'" O N N 124 G "C2'" C N R 125 G "O2'" O N N 126 G "C1'" C N R 127 G N9 N Y N 128 G C8 C Y N 129 G N7 N Y N 130 G C5 C Y N 131 G C6 C N N 132 G O6 O N N 133 G N1 N N N 134 G C2 C N N 135 G N2 N N N 136 G N3 N N N 137 G C4 C Y N 138 G HOP3 H N N 139 G HOP2 H N N 140 G "H5'" H N N 141 G "H5''" H N N 142 G "H4'" H N N 143 G "H3'" H N N 144 G "HO3'" H N N 145 G "H2'" H N N 146 G "HO2'" H N N 147 G "H1'" H N N 148 G H8 H N N 149 G H1 H N N 150 G H21 H N N 151 G H22 H N N 152 HOH O O N N 153 HOH H1 H N N 154 HOH H2 H N N 155 MG MG MG N N 156 NA NA NA N N 157 U OP3 O N N 158 U P P N N 159 U OP1 O N N 160 U OP2 O N N 161 U "O5'" O N N 162 U "C5'" C N N 163 U "C4'" C N R 164 U "O4'" O N N 165 U "C3'" C N S 166 U "O3'" O N N 167 U "C2'" C N R 168 U "O2'" O N N 169 U "C1'" C N R 170 U N1 N N N 171 U C2 C N N 172 U O2 O N N 173 U N3 N N N 174 U C4 C N N 175 U O4 O N N 176 U C5 C N N 177 U C6 C N N 178 U HOP3 H N N 179 U HOP2 H N N 180 U "H5'" H N N 181 U "H5''" H N N 182 U "H4'" H N N 183 U "H3'" H N N 184 U "HO3'" H N N 185 U "H2'" H N N 186 U "HO2'" H N N 187 U "H1'" H N N 188 U H3 H N N 189 U H5 H N N 190 U H6 H N N 191 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 ADP PB O1B doub N N 40 ADP PB O2B sing N N 41 ADP PB O3B sing N N 42 ADP PB O3A sing N N 43 ADP O2B HOB2 sing N N 44 ADP O3B HOB3 sing N N 45 ADP PA O1A doub N N 46 ADP PA O2A sing N N 47 ADP PA O3A sing N N 48 ADP PA "O5'" sing N N 49 ADP O2A HOA2 sing N N 50 ADP "O5'" "C5'" sing N N 51 ADP "C5'" "C4'" sing N N 52 ADP "C5'" "H5'1" sing N N 53 ADP "C5'" "H5'2" sing N N 54 ADP "C4'" "O4'" sing N N 55 ADP "C4'" "C3'" sing N N 56 ADP "C4'" "H4'" sing N N 57 ADP "O4'" "C1'" sing N N 58 ADP "C3'" "O3'" sing N N 59 ADP "C3'" "C2'" sing N N 60 ADP "C3'" "H3'" sing N N 61 ADP "O3'" "HO3'" sing N N 62 ADP "C2'" "O2'" sing N N 63 ADP "C2'" "C1'" sing N N 64 ADP "C2'" "H2'" sing N N 65 ADP "O2'" "HO2'" sing N N 66 ADP "C1'" N9 sing N N 67 ADP "C1'" "H1'" sing N N 68 ADP N9 C8 sing Y N 69 ADP N9 C4 sing Y N 70 ADP C8 N7 doub Y N 71 ADP C8 H8 sing N N 72 ADP N7 C5 sing Y N 73 ADP C5 C6 sing Y N 74 ADP C5 C4 doub Y N 75 ADP C6 N6 sing N N 76 ADP C6 N1 doub Y N 77 ADP N6 HN61 sing N N 78 ADP N6 HN62 sing N N 79 ADP N1 C2 sing Y N 80 ADP C2 N3 doub Y N 81 ADP C2 H2 sing N N 82 ADP N3 C4 sing Y N 83 C OP3 P sing N N 84 C OP3 HOP3 sing N N 85 C P OP1 doub N N 86 C P OP2 sing N N 87 C P "O5'" sing N N 88 C OP2 HOP2 sing N N 89 C "O5'" "C5'" sing N N 90 C "C5'" "C4'" sing N N 91 C "C5'" "H5'" sing N N 92 C "C5'" "H5''" sing N N 93 C "C4'" "O4'" sing N N 94 C "C4'" "C3'" sing N N 95 C "C4'" "H4'" sing N N 96 C "O4'" "C1'" sing N N 97 C "C3'" "O3'" sing N N 98 C "C3'" "C2'" sing N N 99 C "C3'" "H3'" sing N N 100 C "O3'" "HO3'" sing N N 101 C "C2'" "O2'" sing N N 102 C "C2'" "C1'" sing N N 103 C "C2'" "H2'" sing N N 104 C "O2'" "HO2'" sing N N 105 C "C1'" N1 sing N N 106 C "C1'" "H1'" sing N N 107 C N1 C2 sing N N 108 C N1 C6 sing N N 109 C C2 O2 doub N N 110 C C2 N3 sing N N 111 C N3 C4 doub N N 112 C C4 N4 sing N N 113 C C4 C5 sing N N 114 C N4 H41 sing N N 115 C N4 H42 sing N N 116 C C5 C6 doub N N 117 C C5 H5 sing N N 118 C C6 H6 sing N N 119 G OP3 P sing N N 120 G OP3 HOP3 sing N N 121 G P OP1 doub N N 122 G P OP2 sing N N 123 G P "O5'" sing N N 124 G OP2 HOP2 sing N N 125 G "O5'" "C5'" sing N N 126 G "C5'" "C4'" sing N N 127 G "C5'" "H5'" sing N N 128 G "C5'" "H5''" sing N N 129 G "C4'" "O4'" sing N N 130 G "C4'" "C3'" sing N N 131 G "C4'" "H4'" sing N N 132 G "O4'" "C1'" sing N N 133 G "C3'" "O3'" sing N N 134 G "C3'" "C2'" sing N N 135 G "C3'" "H3'" sing N N 136 G "O3'" "HO3'" sing N N 137 G "C2'" "O2'" sing N N 138 G "C2'" "C1'" sing N N 139 G "C2'" "H2'" sing N N 140 G "O2'" "HO2'" sing N N 141 G "C1'" N9 sing N N 142 G "C1'" "H1'" sing N N 143 G N9 C8 sing Y N 144 G N9 C4 sing Y N 145 G C8 N7 doub Y N 146 G C8 H8 sing N N 147 G N7 C5 sing Y N 148 G C5 C6 sing N N 149 G C5 C4 doub Y N 150 G C6 O6 doub N N 151 G C6 N1 sing N N 152 G N1 C2 sing N N 153 G N1 H1 sing N N 154 G C2 N2 sing N N 155 G C2 N3 doub N N 156 G N2 H21 sing N N 157 G N2 H22 sing N N 158 G N3 C4 sing N N 159 HOH O H1 sing N N 160 HOH O H2 sing N N 161 U OP3 P sing N N 162 U OP3 HOP3 sing N N 163 U P OP1 doub N N 164 U P OP2 sing N N 165 U P "O5'" sing N N 166 U OP2 HOP2 sing N N 167 U "O5'" "C5'" sing N N 168 U "C5'" "C4'" sing N N 169 U "C5'" "H5'" sing N N 170 U "C5'" "H5''" sing N N 171 U "C4'" "O4'" sing N N 172 U "C4'" "C3'" sing N N 173 U "C4'" "H4'" sing N N 174 U "O4'" "C1'" sing N N 175 U "C3'" "O3'" sing N N 176 U "C3'" "C2'" sing N N 177 U "C3'" "H3'" sing N N 178 U "O3'" "HO3'" sing N N 179 U "C2'" "O2'" sing N N 180 U "C2'" "C1'" sing N N 181 U "C2'" "H2'" sing N N 182 U "O2'" "HO2'" sing N N 183 U "C1'" N1 sing N N 184 U "C1'" "H1'" sing N N 185 U N1 C2 sing N N 186 U N1 C6 sing N N 187 U C2 O2 doub N N 188 U C2 N3 sing N N 189 U N3 C4 sing N N 190 U N3 H3 sing N N 191 U C4 O4 doub N N 192 U C4 C5 sing N N 193 U C5 C6 doub N N 194 U C5 H5 sing N N 195 U C6 H6 sing N N 196 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 6TF1 'double helix' 6TF1 'a-form double helix' 6TF1 tetraloop 6TF1 'bulge loop' 6TF1 'mismatched base pair' 6TF1 'internal loop' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 1 1_555 A C 52 1_555 -0.292 0.017 -0.450 -14.544 -13.977 3.991 1 A_G1:C52_A A 1 ? A 52 ? 19 1 1 A G 2 1_555 A C 51 1_555 -0.253 -0.076 -0.358 -10.770 -13.086 4.736 2 A_G2:C51_A A 2 ? A 51 ? 19 1 1 A C 3 1_555 A G 50 1_555 0.124 -0.147 0.166 -4.383 -14.049 2.663 3 A_C3:G50_A A 3 ? A 50 ? 19 1 1 A U 4 1_555 A A 49 1_555 -0.088 -0.153 0.164 -3.128 -12.084 4.265 4 A_U4:A49_A A 4 ? A 49 ? 20 1 1 A U 5 1_555 A G 48 1_555 1.995 -0.731 0.481 0.729 -9.596 1.860 5 A_U5:G48_A A 5 ? A 48 ? 28 1 1 A C 6 1_555 A G 47 1_555 0.007 -0.131 0.355 5.867 -17.437 1.871 6 A_C6:G47_A A 6 ? A 47 ? 19 1 1 A A 7 1_555 A U 46 1_555 0.044 0.042 0.638 6.672 -6.641 -6.712 7 A_A7:U46_A A 7 ? A 46 ? 20 1 1 A G 16 1_555 A C 45 1_555 -0.251 -0.293 0.115 -9.974 -12.516 -0.096 8 A_G16:C45_A A 16 ? A 45 ? 19 1 1 A U 17 1_555 A A 44 1_555 -0.195 -0.149 0.048 -8.601 -7.716 2.646 9 A_U17:A44_A A 17 ? A 44 ? 20 1 1 A A 18 1_555 A U 43 1_555 0.128 -0.081 0.190 -1.931 -2.786 1.084 10 A_A18:U43_A A 18 ? A 43 ? 20 1 1 A G 19 1_555 A C 42 1_555 -0.091 -0.121 0.200 -0.625 -9.535 1.675 11 A_G19:C42_A A 19 ? A 42 ? 19 1 1 A G 20 1_555 A U 41 1_555 -1.813 -0.558 0.263 2.561 -3.263 -1.932 12 A_G20:U41_A A 20 ? A 41 ? 28 1 1 A U 21 1_555 A A 40 1_555 -0.133 -0.050 -0.063 1.427 -11.882 4.774 13 A_U21:A40_A A 21 ? A 40 ? 20 1 1 A U 22 1_555 A A 39 1_555 0.126 -0.145 0.096 0.414 -6.748 3.372 14 A_U22:A39_A A 22 ? A 39 ? 20 1 1 A G 23 1_555 A C 37 1_555 -0.160 -0.152 0.038 -0.275 -7.932 -0.191 15 A_G23:C37_A A 23 ? A 37 ? 19 1 1 A G 24 1_555 A A 35 1_555 -0.174 1.510 -0.235 2.460 0.508 -26.840 16 A_G24:A35_A A 24 ? A 35 ? 8 1 1 A G 25 1_555 A C 34 1_555 -0.075 -0.177 0.808 13.368 -11.585 -2.431 17 A_G25:C34_A A 25 ? A 34 ? 19 1 1 A C 26 1_555 A G 33 1_555 0.263 -0.157 0.344 0.870 -8.148 -1.013 18 A_C26:G33_A A 26 ? A 33 ? 19 1 1 A C 27 1_555 A G 32 1_555 0.109 -0.142 0.165 0.568 6.019 1.587 19 A_C27:G32_A A 27 ? A 32 ? 19 1 1 A G 28 1_555 A A 31 1_555 7.113 -5.313 1.143 14.185 3.750 -7.204 20 A_G28:A31_A A 28 ? A 31 ? ? 10 1 A C 13 1_555 A G 38 1_555 0.272 -0.174 0.112 8.119 -6.360 -1.759 21 A_C13:G38_A A 13 ? A 38 ? 19 1 1 A C 14 1_555 A G 36 1_555 0.124 -0.157 0.225 -0.614 -1.355 0.582 22 A_C14:G36_A A 14 ? A 36 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 1 1_555 A C 52 1_555 A G 2 1_555 A C 51 1_555 0.571 -1.490 3.317 -1.651 7.600 30.042 -4.185 -1.371 2.830 14.361 3.119 31.010 1 AA_G1G2:C51C52_AA A 1 ? A 52 ? A 2 ? A 51 ? 1 A G 2 1_555 A C 51 1_555 A C 3 1_555 A G 50 1_555 0.311 -1.471 3.018 -4.307 6.822 34.752 -3.270 -1.055 2.636 11.235 7.093 35.648 2 AA_G2C3:G50C51_AA A 2 ? A 51 ? A 3 ? A 50 ? 1 A C 3 1_555 A G 50 1_555 A U 4 1_555 A A 49 1_555 -0.453 -1.846 3.219 -2.185 4.148 25.286 -5.251 0.438 2.911 9.374 4.938 25.711 3 AA_C3U4:A49G50_AA A 3 ? A 50 ? A 4 ? A 49 ? 1 A U 4 1_555 A A 49 1_555 A U 5 1_555 A G 48 1_555 0.015 -1.116 3.190 -3.442 3.188 38.938 -2.029 -0.418 3.080 4.762 5.141 39.209 4 AA_U4U5:G48A49_AA A 4 ? A 49 ? A 5 ? A 48 ? 1 A U 5 1_555 A G 48 1_555 A C 6 1_555 A G 47 1_555 -0.224 -2.414 2.581 2.297 10.069 23.722 -7.191 0.909 1.425 23.140 -5.278 25.843 5 AA_U5C6:G47G48_AA A 5 ? A 48 ? A 6 ? A 47 ? 1 A C 6 1_555 A G 47 1_555 A A 7 1_555 A U 46 1_555 -1.120 -1.410 2.981 -3.501 10.721 35.881 -3.405 1.343 2.564 16.896 5.517 37.556 6 AA_C6A7:U46G47_AA A 6 ? A 47 ? A 7 ? A 46 ? 1 A A 7 1_555 A U 46 1_555 A G 16 1_555 A C 45 1_555 0.651 -2.943 3.496 8.639 7.694 32.035 -6.253 0.259 2.812 13.408 -15.055 34.009 7 AA_A7G16:C45U46_AA A 7 ? A 46 ? A 16 ? A 45 ? 1 A G 16 1_555 A C 45 1_555 A U 17 1_555 A A 44 1_555 -0.530 -1.937 3.157 1.733 2.157 33.546 -3.678 1.182 3.000 3.730 -2.997 33.657 8 AA_G16U17:A44C45_AA A 16 ? A 45 ? A 17 ? A 44 ? 1 A U 17 1_555 A A 44 1_555 A A 18 1_555 A U 43 1_555 0.079 -1.082 2.996 0.199 10.112 29.468 -3.687 -0.114 2.498 19.180 -0.377 31.119 9 AA_U17A18:U43A44_AA A 17 ? A 44 ? A 18 ? A 43 ? 1 A A 18 1_555 A U 43 1_555 A G 19 1_555 A C 42 1_555 0.504 -1.698 3.227 2.021 7.077 26.733 -5.132 -0.599 2.726 14.948 -4.268 27.710 10 AA_A18G19:C42U43_AA A 18 ? A 43 ? A 19 ? A 42 ? 1 A G 19 1_555 A C 42 1_555 A G 20 1_555 A U 41 1_555 0.053 -2.344 2.927 -3.804 5.856 25.634 -6.362 -0.932 2.312 12.897 8.378 26.553 11 AA_G19G20:U41C42_AA A 19 ? A 42 ? A 20 ? A 41 ? 1 A G 20 1_555 A U 41 1_555 A U 21 1_555 A A 40 1_555 -0.601 -1.964 3.264 0.302 4.574 37.919 -3.557 0.956 3.011 7.008 -0.463 38.185 12 AA_G20U21:A40U41_AA A 20 ? A 41 ? A 21 ? A 40 ? 1 A U 21 1_555 A A 40 1_555 A U 22 1_555 A A 39 1_555 0.356 -0.920 3.354 -1.377 6.606 34.380 -2.521 -0.799 3.113 11.044 2.302 35.016 13 AA_U21U22:A39A40_AA A 21 ? A 40 ? A 22 ? A 39 ? 1 A U 22 1_555 A A 39 1_555 A G 23 1_555 A C 37 1_555 1.620 -1.296 3.179 1.860 12.101 38.127 -3.185 -2.172 2.732 17.968 -2.761 39.974 14 AA_U22G23:C37A39_AA A 22 ? A 39 ? A 23 ? A 37 ? 1 A G 23 1_555 A C 37 1_555 A G 24 1_555 A A 35 1_555 -0.196 -3.740 3.337 -1.974 -3.604 32.079 -6.025 -0.027 3.729 -6.489 3.555 32.334 15 AA_G23G24:A35C37_AA A 23 ? A 37 ? A 24 ? A 35 ? 1 A G 24 1_555 A A 35 1_555 A G 25 1_555 A C 34 1_555 0.837 -2.099 2.827 -12.012 7.642 29.076 -4.775 -3.081 1.760 14.198 22.317 32.307 16 AA_G24G25:C34A35_AA A 24 ? A 35 ? A 25 ? A 34 ? 1 A G 25 1_555 A C 34 1_555 A C 26 1_555 A G 33 1_555 0.285 -1.878 3.482 1.634 3.887 41.552 -3.060 -0.221 3.309 5.462 -2.296 41.756 17 AA_G25C26:G33C34_AA A 25 ? A 34 ? A 26 ? A 33 ? 1 A C 26 1_555 A G 33 1_555 A C 27 1_555 A G 32 1_555 0.238 -2.211 3.172 -0.830 3.822 30.646 -4.840 -0.596 2.875 7.194 1.562 30.888 18 AA_C26C27:G32G33_AA A 26 ? A 33 ? A 27 ? A 32 ? 1 A C 27 1_555 A G 32 1_555 A G 28 1_555 A A 31 1_555 -1.911 -0.498 2.671 -1.785 6.796 51.408 -0.942 2.088 2.650 7.792 2.047 51.853 19 AA_C27G28:A31G32_AA A 27 ? A 32 ? A 28 ? A 31 ? 1 A C 13 1_555 A G 38 1_555 A C 14 1_555 A G 36 1_555 2.046 -1.697 3.320 -1.052 3.533 52.004 -2.164 -2.398 3.168 4.023 1.198 52.126 20 AA_C13C14:G36G38_AA A 13 ? A 38 ? A 14 ? A 36 ? # _pdbx_audit_support.funding_organization 'Cancer Research UK' _pdbx_audit_support.country 'United Kingdom' _pdbx_audit_support.grant_number A18604 _pdbx_audit_support.ordinal 1 # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id ADP _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id ADP _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 6TF0 _pdbx_initial_refinement_model.details ? # _space_group.name_H-M_alt 'I 2 2 2' _space_group.name_Hall 'I 2 2' _space_group.IT_number 23 _space_group.crystal_system orthorhombic _space_group.id 1 # _atom_sites.entry_id 6TF1 _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.017366 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.016945 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.005247 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol _atom_type.scat_dispersion_real _atom_type.scat_dispersion_imag _atom_type.scat_Cromer_Mann_a1 _atom_type.scat_Cromer_Mann_a2 _atom_type.scat_Cromer_Mann_a3 _atom_type.scat_Cromer_Mann_a4 _atom_type.scat_Cromer_Mann_b1 _atom_type.scat_Cromer_Mann_b2 _atom_type.scat_Cromer_Mann_b3 _atom_type.scat_Cromer_Mann_b4 _atom_type.scat_Cromer_Mann_c _atom_type.scat_source _atom_type.scat_dispersion_source C ? ? 3.54356 2.42580 ? ? 25.62398 1.50364 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? H ? ? 0.51345 0.48472 ? ? 24.73122 6.32584 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? MG ? ? 9.41153 2.53737 ? ? 2.59044 63.03566 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? N ? ? 4.01032 2.96436 ? ? 19.97189 1.75589 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? NA ? ? 9.38062 1.54875 ? ? 3.38349 72.32734 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? O ? ? 4.49882 3.47563 ? ? 15.80542 1.70748 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? P ? ? 9.51135 5.44231 ? ? 1.42069 35.72801 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? # loop_