HEADER TRANSCRIPTION 13-NOV-19 6TF4 TITLE SOLUTION STRUCTURE OF RFAH C-TERMINAL DOMAIN FROM VIBRIO CHOLERAE COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSCRIPTION/TRANSLATION REGULATORY TRANSFORMER PROTEIN COMPND 3 RFAH; COMPND 4 CHAIN: A; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VIBRIO CHOLERAE; SOURCE 3 ORGANISM_TAXID: 666; SOURCE 4 GENE: RFAH, FLM11_14060, FPW41_04940; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: B; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PETGB1A_VCRFAH-CTD KEYWDS TRANSCRIPTION FACTOR, FOLD SWITCHING, TRANSFORMER PROTEIN, NUSG KEYWDS 2 PARALOG, TRANSCRIPTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR P.K.ZUBER,K.SCHWEIMER,S.H.KNAUER REVDAT 2 07-DEC-22 6TF4 1 JRNL REVDAT 1 24-NOV-21 6TF4 0 JRNL AUTH P.K.ZUBER,T.DAVITER,R.HEISSMANN,U.PERSAU,K.SCHWEIMER, JRNL AUTH 2 S.H.KNAUER JRNL TITL STRUCTURAL AND THERMODYNAMIC ANALYSES OF THE BETA-TO-ALPHA JRNL TITL 2 TRANSFORMATION IN RFAH REVEAL PRINCIPLES OF FOLD-SWITCHING JRNL TITL 3 PROTEINS. JRNL REF ELIFE V. 11 2022 JRNL REFN ESSN 2050-084X JRNL PMID 36255050 JRNL DOI 10.7554/ELIFE.76630 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR NIH V1.2.1 REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: FLOATING ASSIGNMENT OF PRO-CHIRAL REMARK 3 GROUPS REMARK 4 REMARK 4 6TF4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 13-NOV-19. REMARK 100 THE DEPOSITION ID IS D_1292105362. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298; 298 REMARK 210 PH : 6.5; 7.5 REMARK 210 IONIC STRENGTH : 136; 98 REMARK 210 PRESSURE : 1 ATM; 1 ATM REMARK 210 SAMPLE CONTENTS : 0.5 MM [U-99% 13C; U-99% 15N] REMARK 210 VIBRIO CHOLERAE RFAH C-TERMINAL REMARK 210 DOMAIN, 20 MM SODIUM PHOSPHATE, REMARK 210 100 MM SODIUM CHLORIDE, 90% H2O/ REMARK 210 10% D2O; 0.5 MM [U-99% 13C; U-99% REMARK 210 15N] VIBRIO CHOLERAE RFAH C- REMARK 210 TERMINAL DOMAIN, 10 MM POTASSIUM REMARK 210 PHOSPHATE, 50 MM POTASSIUM REMARK 210 CHLORIDE, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C CTHSQC REMARK 210 ALIPHATIC; 2D 1H-13C HSQC REMARK 210 AROMATIC; 3D HNCO; 3D HNCA; 3D REMARK 210 HNCACB; 3D CBCA(CO)NH; 3D CCH- REMARK 210 TOCSY; 3D HCCH-TOCSY; 3D HBHA(CO) REMARK 210 NH; 3D CACO; 3D CON; 3D 1H-13C REMARK 210 NOESY ALIPHATIC; 3D 1H-13C NOESY REMARK 210 AROMATIC; 3D 1H-15N NOESY; 3D REMARK 210 C(CO)NH; 3D LONG RANGE HNCO; REMARK 210 13CO SPINECHO DIFFERENCE 13C REMARK 210 CTHSQC; 15N SPINECHO DIFFERENCE REMARK 210 13C CTHSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 700 MHZ; 900 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE; ASCEND AEON REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN V3.5 PL5, NMRVIEWJ REMARK 210 V9.2.0-B2 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 80 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 GLY A 99 REMARK 465 ALA A 100 REMARK 465 MET A 101 REMARK 465 GLY A 102 REMARK 465 GLU A 103 REMARK 465 GLN A 104 REMARK 465 LEU A 105 REMARK 465 LYS A 106 REMARK 465 HIS A 107 REMARK 465 ALA A 108 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLU A 158 H ASP A 161 1.57 REMARK 500 O VAL A 121 H GLY A 128 1.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LEU A 134 -79.80 -121.65 REMARK 500 1 PRO A 136 81.36 -69.94 REMARK 500 2 LEU A 134 -66.43 -108.09 REMARK 500 2 PRO A 136 80.72 -69.58 REMARK 500 3 LEU A 134 -71.22 -123.55 REMARK 500 3 PRO A 136 78.63 -68.45 REMARK 500 3 ASP A 137 93.72 -68.44 REMARK 500 4 LEU A 134 -74.76 -123.59 REMARK 500 4 PRO A 136 80.58 -69.16 REMARK 500 4 ASP A 137 97.27 -69.75 REMARK 500 5 LEU A 134 -70.59 -138.73 REMARK 500 5 PRO A 136 77.09 -69.18 REMARK 500 5 ASP A 137 98.62 -62.87 REMARK 500 6 LEU A 134 -81.65 -131.38 REMARK 500 6 PRO A 136 79.61 -69.64 REMARK 500 6 ASP A 137 97.54 -69.28 REMARK 500 7 PRO A 136 80.57 -68.79 REMARK 500 8 LEU A 134 -72.87 -107.25 REMARK 500 8 ASP A 137 97.55 -69.79 REMARK 500 10 LEU A 134 -73.13 -108.55 REMARK 500 10 ASP A 137 39.35 -86.61 REMARK 500 11 LEU A 134 -77.49 -119.63 REMARK 500 11 PRO A 136 78.32 -68.65 REMARK 500 11 ASP A 137 93.01 -67.71 REMARK 500 12 LEU A 134 -68.94 -97.05 REMARK 500 12 PRO A 136 75.49 -69.66 REMARK 500 13 LEU A 134 -74.66 -128.21 REMARK 500 13 PRO A 136 80.64 -68.17 REMARK 500 14 LEU A 134 -62.07 -108.93 REMARK 500 15 LEU A 134 -82.24 -134.70 REMARK 500 15 PRO A 136 82.92 -69.95 REMARK 500 16 LEU A 134 -81.66 -123.67 REMARK 500 16 PRO A 136 82.50 -69.45 REMARK 500 17 LEU A 112 161.86 56.60 REMARK 500 17 LEU A 134 -72.77 -128.60 REMARK 500 18 PRO A 136 64.27 -69.96 REMARK 500 18 ASP A 137 93.28 -64.90 REMARK 500 19 LEU A 134 -74.44 -116.31 REMARK 500 19 ASP A 137 96.12 -64.29 REMARK 500 20 LEU A 134 -72.88 -118.91 REMARK 500 20 PRO A 136 76.05 -69.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 120 0.11 SIDE CHAIN REMARK 500 1 ARG A 123 0.22 SIDE CHAIN REMARK 500 1 ARG A 141 0.30 SIDE CHAIN REMARK 500 2 ARG A 120 0.31 SIDE CHAIN REMARK 500 2 ARG A 123 0.20 SIDE CHAIN REMARK 500 2 ARG A 141 0.23 SIDE CHAIN REMARK 500 3 ARG A 120 0.31 SIDE CHAIN REMARK 500 3 ARG A 123 0.31 SIDE CHAIN REMARK 500 3 ARG A 141 0.23 SIDE CHAIN REMARK 500 4 ARG A 120 0.25 SIDE CHAIN REMARK 500 4 ARG A 123 0.24 SIDE CHAIN REMARK 500 4 ARG A 141 0.30 SIDE CHAIN REMARK 500 5 ARG A 120 0.11 SIDE CHAIN REMARK 500 5 ARG A 123 0.30 SIDE CHAIN REMARK 500 5 ARG A 141 0.28 SIDE CHAIN REMARK 500 6 ARG A 120 0.31 SIDE CHAIN REMARK 500 6 ARG A 123 0.28 SIDE CHAIN REMARK 500 6 ARG A 141 0.27 SIDE CHAIN REMARK 500 7 ARG A 120 0.31 SIDE CHAIN REMARK 500 7 ARG A 123 0.29 SIDE CHAIN REMARK 500 7 ARG A 141 0.27 SIDE CHAIN REMARK 500 8 ARG A 120 0.32 SIDE CHAIN REMARK 500 8 ARG A 123 0.16 SIDE CHAIN REMARK 500 8 ARG A 141 0.19 SIDE CHAIN REMARK 500 9 ARG A 120 0.28 SIDE CHAIN REMARK 500 9 ARG A 123 0.21 SIDE CHAIN REMARK 500 9 ARG A 141 0.23 SIDE CHAIN REMARK 500 10 ARG A 120 0.19 SIDE CHAIN REMARK 500 10 ARG A 123 0.31 SIDE CHAIN REMARK 500 10 ARG A 141 0.10 SIDE CHAIN REMARK 500 11 ARG A 120 0.30 SIDE CHAIN REMARK 500 11 ARG A 141 0.19 SIDE CHAIN REMARK 500 12 ARG A 120 0.29 SIDE CHAIN REMARK 500 12 ARG A 123 0.27 SIDE CHAIN REMARK 500 12 ARG A 141 0.21 SIDE CHAIN REMARK 500 13 ARG A 120 0.15 SIDE CHAIN REMARK 500 13 ARG A 123 0.27 SIDE CHAIN REMARK 500 13 ARG A 141 0.32 SIDE CHAIN REMARK 500 14 ARG A 120 0.21 SIDE CHAIN REMARK 500 14 ARG A 123 0.31 SIDE CHAIN REMARK 500 14 ARG A 141 0.31 SIDE CHAIN REMARK 500 15 ARG A 120 0.25 SIDE CHAIN REMARK 500 15 ARG A 123 0.22 SIDE CHAIN REMARK 500 15 ARG A 141 0.24 SIDE CHAIN REMARK 500 16 ARG A 120 0.10 SIDE CHAIN REMARK 500 16 ARG A 123 0.31 SIDE CHAIN REMARK 500 16 ARG A 141 0.24 SIDE CHAIN REMARK 500 17 ARG A 120 0.30 SIDE CHAIN REMARK 500 17 ARG A 123 0.30 SIDE CHAIN REMARK 500 17 ARG A 141 0.32 SIDE CHAIN REMARK 500 REMARK 500 THIS ENTRY HAS 59 PLANE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 34450 RELATED DB: BMRB REMARK 900 SOLUTION STRUCTURE OF RFAH C-TERMINAL DOMAIN FROM VIBRIO CHOLERAE DBREF1 6TF4 A 103 165 UNP A0A557GAU8_VIBCL DBREF2 6TF4 A A0A557GAU8 103 165 SEQADV 6TF4 GLY A 99 UNP A0A557GAU EXPRESSION TAG SEQADV 6TF4 ALA A 100 UNP A0A557GAU EXPRESSION TAG SEQADV 6TF4 MET A 101 UNP A0A557GAU EXPRESSION TAG SEQADV 6TF4 GLY A 102 UNP A0A557GAU EXPRESSION TAG SEQRES 1 A 67 GLY ALA MET GLY GLU GLN LEU LYS HIS ALA THR LYS GLN SEQRES 2 A 67 LEU PRO GLU LYS GLY GLN THR VAL ARG VAL ALA ARG GLY SEQRES 3 A 67 GLN PHE ALA GLY ILE GLU ALA ILE TYR LEU GLU PRO ASP SEQRES 4 A 67 GLY ASP THR ARG SER ILE MET LEU VAL LYS MET ILE SER SEQRES 5 A 67 GLN GLN VAL PRO MET SER ILE GLU ASN THR ASP TRP GLU SEQRES 6 A 67 VAL THR SHEET 1 AA1 5 VAL A 153 ILE A 157 0 SHEET 2 AA1 5 SER A 142 VAL A 146 -1 N VAL A 146 O VAL A 153 SHEET 3 AA1 5 ILE A 129 GLU A 135 -1 N LEU A 134 O ILE A 143 SHEET 4 AA1 5 GLN A 117 VAL A 121 -1 N GLN A 117 O TYR A 133 SHEET 5 AA1 5 TRP A 162 GLU A 163 -1 O GLU A 163 N ARG A 120 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1