HEADER RNA 14-NOV-19 6TFE TITLE CRYSTAL STRUCTURE OF THE ADP-BINDING DOMAIN OF THE NAD+ RIBOSWITCH TITLE 2 WITH N6-METHYL-ADENOSINE-5'-TRIPHOSPHATE (M6ATP) COMPND MOL_ID: 1; COMPND 2 MOLECULE: CHAINS: A; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: CANDIDATUS KORIBACTER VERSATILIS ELLIN345; SOURCE 4 ORGANISM_TAXID: 204669 KEYWDS RNA STRUCTURE; RIBOSWITCH; X-RAY CRYSTALLOGRAPHY, NON-CODING RNA, RNA EXPDTA X-RAY DIFFRACTION AUTHOR L.HUANG,D.M.J.LILLEY REVDAT 1 23-SEP-20 6TFE 0 JRNL AUTH L.HUANG,J.WANG,D.M.J.LILLEY JRNL TITL STRUCTURE AND LIGAND BINDING OF THE ADP-BINDING DOMAIN OF JRNL TITL 2 THE NAD+ RIBOSWITCH. JRNL REF RNA V. 26 878 2020 JRNL REFN ESSN 1469-9001 JRNL PMID 32295864 JRNL DOI 10.1261/RNA.074898.120 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.52 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 27515 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.240 REMARK 3 R VALUE (WORKING SET) : 0.239 REMARK 3 FREE R VALUE : 0.257 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.060 REMARK 3 FREE R VALUE TEST SET COUNT : 1391 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.5200 - 4.9500 0.99 2607 160 0.1891 0.1854 REMARK 3 2 4.9500 - 3.9300 0.99 2619 148 0.2130 0.2588 REMARK 3 3 3.9300 - 3.4400 0.99 2593 145 0.2265 0.2854 REMARK 3 4 3.4400 - 3.1200 0.98 2621 104 0.2476 0.2229 REMARK 3 5 3.1200 - 2.9000 0.97 2575 173 0.2741 0.2992 REMARK 3 6 2.9000 - 2.7300 0.99 2583 128 0.3519 0.3846 REMARK 3 7 2.7300 - 2.5900 1.00 2662 124 0.3823 0.4278 REMARK 3 8 2.5900 - 2.4800 0.99 2659 121 0.3906 0.4600 REMARK 3 9 2.4800 - 2.3800 0.99 2635 126 0.4077 0.4953 REMARK 3 10 2.3800 - 2.3000 0.99 2570 162 0.4444 0.4688 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.415 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 39.648 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 71.97 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 98.85 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 1277 REMARK 3 ANGLE : 1.099 1990 REMARK 3 CHIRALITY : 0.049 263 REMARK 3 PLANARITY : 0.008 53 REMARK 3 DIHEDRAL : 11.805 636 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6TFE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 14-NOV-19. REMARK 100 THE DEPOSITION ID IS D_1292105378. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-OCT-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I24 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9186 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27515 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 47.520 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 6.300 REMARK 200 R MERGE (I) : 0.05100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.34 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.82000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 75.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 5.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M POTASSIUM CHLORIDE, 0.1 M MG REMARK 280 ACETATE, 0.05 M SODIUM CACODYLATE PH 7.2, 10% W/V POLYETHYLENE REMARK 280 GLYCOL 3350, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 280K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 28.67500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 29.72000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 95.03500 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 28.67500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 29.72000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 95.03500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 28.67500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 29.72000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 95.03500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 28.67500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 29.72000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 95.03500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1530 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9510 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -95.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 H5 C A 42 BR BR A 111 1.23 REMARK 500 H5 C A 45 BR BR A 112 1.44 REMARK 500 O HOH A 201 O HOH A 203 2.09 REMARK 500 O13 N6E A 117 O HOH A 201 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O2' C A 52 O2' C A 52 3555 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 101 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 A A 8 OP2 REMARK 620 2 C A 9 OP2 107.7 REMARK 620 3 HOH A 208 O 88.1 87.4 REMARK 620 4 HOH A 211 O 87.5 161.2 81.9 REMARK 620 5 HOH A 214 O 158.8 91.5 83.6 72.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 105 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 A A 8 OP1 REMARK 620 2 N6E A 117 O6 110.4 REMARK 620 3 N6E A 117 O8 110.4 84.5 REMARK 620 4 N6E A 117 O13 167.1 63.3 59.0 REMARK 620 5 HOH A 201 O 142.8 68.0 106.4 47.5 REMARK 620 6 HOH A 203 O 78.5 91.4 171.0 112.0 64.6 REMARK 620 7 HOH A 207 O 84.6 163.3 97.4 103.4 95.8 84.3 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 102 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 A A 11 OP2 REMARK 620 2 U A 17 OP1 40.0 REMARK 620 3 HOH A 209 O 48.4 12.3 REMARK 620 4 HOH A 212 O 42.7 3.5 12.9 REMARK 620 5 HOH A 216 O 34.6 12.5 14.3 15.8 REMARK 620 6 HOH A 217 O 29.1 10.8 20.9 13.7 11.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 113 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 C A 15 O2 REMARK 620 2 G A 36 O6 88.3 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 114 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G A 19 O6 REMARK 620 2 G A 20 O6 73.9 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 103 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G A 47 O6 REMARK 620 2 HOH A 205 O 72.7 REMARK 620 3 HOH A 206 O 84.7 96.9 REMARK 620 4 HOH A 218 O 101.4 72.5 165.2 REMARK 620 5 HOH A 219 O 95.0 143.6 116.4 76.8 REMARK 620 6 HOH A 224 O 155.9 87.7 83.9 85.3 109.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 104 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 202 O REMARK 620 2 HOH A 204 O 99.8 REMARK 620 3 HOH A 213 O 83.3 87.4 REMARK 620 4 HOH A 222 O 166.4 82.5 83.3 REMARK 620 5 HOH A 223 O 97.2 101.3 171.0 95.5 REMARK 620 6 HOH A 225 O 86.9 155.9 70.3 85.9 100.8 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 104 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 105 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 106 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 107 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 110 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BR A 111 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BR A 112 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 113 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 114 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 116 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue N6E A 117 DBREF1 6TFE A 1 52 GB CP000360.1 DBREF2 6TFE A 94549081 5127586 5127637 SEQADV 6TFE A A 29 GB 94549081 C 27614 CONFLICT SEQRES 1 A 52 G G C U U C A A C A A C C SEQRES 2 A 52 C C G U A G G U U G G G C SEQRES 3 A 52 C G A A A G G C A G C G A SEQRES 4 A 52 A U C U A C U G G A G C C HET MG A 101 1 HET MG A 102 1 HET MG A 103 1 HET MG A 104 1 HET MG A 105 1 HET MG A 106 1 HET MG A 107 1 HET MG A 108 1 HET MG A 109 1 HET MG A 110 1 HET BR A 111 1 HET BR A 112 1 HET NA A 113 1 HET NA A 114 1 HET NA A 115 1 HET NA A 116 1 HET N6E A 117 46 HETNAM MG MAGNESIUM ION HETNAM BR BROMIDE ION HETNAM NA SODIUM ION HETNAM N6E N6-METHYLADENOSINE 5'-TRIPHOSPHATE FORMUL 2 MG 10(MG 2+) FORMUL 12 BR 2(BR 1-) FORMUL 14 NA 4(NA 1+) FORMUL 18 N6E C11 H18 N5 O13 P3 FORMUL 19 HOH *25(H2 O) LINK C5 C A 42 BR BR A 111 1555 1555 2.10 LINK OP2 A A 7 MG MG A 106 1555 1555 2.68 LINK OP2 A A 8 MG MG A 101 1555 1555 1.99 LINK OP1 A A 8 MG MG A 105 1555 1555 1.98 LINK OP2 C A 9 MG MG A 101 1555 1555 1.81 LINK OP2 A A 11 MG MG A 102 1555 2655 2.04 LINK O2 C A 15 NA NA A 113 1555 1555 2.81 LINK OP1 U A 17 MG MG A 102 1555 1555 1.92 LINK O6 G A 19 NA NA A 114 1555 1555 3.18 LINK O6 G A 20 NA NA A 114 1555 1555 2.94 LINK O6 G A 36 NA NA A 113 1555 1555 3.06 LINK O6 G A 47 MG MG A 103 1555 1555 2.26 LINK MG MG A 101 O HOH A 208 1555 1555 2.01 LINK MG MG A 101 O HOH A 211 1555 1555 2.08 LINK MG MG A 101 O HOH A 214 1555 1555 2.12 LINK MG MG A 102 O HOH A 209 1555 2655 2.10 LINK MG MG A 102 O HOH A 212 1555 1555 1.99 LINK MG MG A 102 O HOH A 216 1555 1555 2.20 LINK MG MG A 102 O HOH A 217 1555 2655 2.27 LINK MG MG A 103 O HOH A 205 1555 1555 2.48 LINK MG MG A 103 O HOH A 206 1555 1555 2.12 LINK MG MG A 103 O HOH A 218 1555 1555 2.24 LINK MG MG A 103 O HOH A 219 1555 1555 2.71 LINK MG MG A 103 O HOH A 224 1555 1555 2.39 LINK MG MG A 104 O HOH A 202 1555 1555 2.15 LINK MG MG A 104 O HOH A 204 1555 1555 1.93 LINK MG MG A 104 O HOH A 213 1555 7545 2.25 LINK MG MG A 104 O HOH A 222 1555 1555 2.38 LINK MG MG A 104 O HOH A 223 1555 1555 2.44 LINK MG MG A 104 O HOH A 225 1555 7545 2.68 LINK MG MG A 105 O6 N6E A 117 1555 1555 2.02 LINK MG MG A 105 O8 N6E A 117 1555 1555 2.37 LINK MG MG A 105 O13 N6E A 117 1555 1555 2.91 LINK MG MG A 105 O HOH A 201 1555 1555 1.97 LINK MG MG A 105 O HOH A 203 1555 1555 1.95 LINK MG MG A 105 O HOH A 207 1555 1555 1.86 SITE 1 AC1 6 A A 8 C A 9 A A 10 HOH A 208 SITE 2 AC1 6 HOH A 211 HOH A 214 SITE 1 AC2 6 A A 11 U A 17 HOH A 209 HOH A 212 SITE 2 AC2 6 HOH A 216 HOH A 217 SITE 1 AC3 6 G A 47 HOH A 205 HOH A 206 HOH A 218 SITE 2 AC3 6 HOH A 219 HOH A 224 SITE 1 AC4 6 HOH A 202 HOH A 204 HOH A 213 HOH A 222 SITE 2 AC4 6 HOH A 223 HOH A 225 SITE 1 AC5 5 A A 8 N6E A 117 HOH A 201 HOH A 203 SITE 2 AC5 5 HOH A 207 SITE 1 AC6 1 A A 7 SITE 1 AC7 1 G A 23 SITE 1 AC8 1 G A 32 SITE 1 AC9 2 U A 41 C A 42 SITE 1 AD1 1 C A 45 SITE 1 AD2 3 A A 11 C A 15 G A 36 SITE 1 AD3 2 G A 19 G A 20 SITE 1 AD4 1 G A 28 SITE 1 AD5 8 C A 6 A A 7 A A 8 G A 47 SITE 2 AD5 8 G A 48 MG A 105 HOH A 201 HOH A 203 CRYST1 57.350 59.440 190.070 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017437 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016824 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005261 0.00000