HEADER TRANSFERASE 14-NOV-19 6TFU TITLE CRYSTAL STRUCTURE OF EGFR T790M/V948R IN COMPLEX WITH COVALENT TITLE 2 PYRROLOPYRIMIDINE 14D COMPND MOL_ID: 1; COMPND 2 MOLECULE: EPIDERMAL GROWTH FACTOR RECEPTOR; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PROTO-ONCOGENE C-ERBB-1,RECEPTOR TYROSINE-PROTEIN KINASE COMPND 5 ERBB-1; COMPND 6 EC: 2.7.10.1; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: EGFR, ERBB, ERBB1, HER1; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108 KEYWDS HER2, EGFR, COVALENT INHIBITORS, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR J.NIGGENABER,M.P.MUELLER,D.RAUH REVDAT 3 24-JAN-24 6TFU 1 REMARK REVDAT 2 04-NOV-20 6TFU 1 JRNL REVDAT 1 30-SEP-20 6TFU 0 JRNL AUTH J.LATEGAHN,J.HARDICK,T.GRABE,J.NIGGENABER,K.JEYAKUMAR, JRNL AUTH 2 M.KEUL,H.L.TUMBRINK,C.BECKER,L.HODSON,T.KIRSCHNER, JRNL AUTH 3 P.KLOVEKORN,J.KETZER,M.BAUMANN,S.TERHEYDEN,A.UNGER, JRNL AUTH 4 J.WEISNER,M.P.MULLER,W.A.L.VAN OTTERLO,S.BAUER,D.RAUH JRNL TITL TARGETING HER2-INSYVMA WITH COVALENT INHIBITORS-A FOCUSED JRNL TITL 2 COMPOUND SCREENING AND STRUCTURE-BASED DESIGN APPROACH. JRNL REF J.MED.CHEM. V. 63 11725 2020 JRNL REFN ISSN 0022-2623 JRNL PMID 32931277 JRNL DOI 10.1021/ACS.JMEDCHEM.0C00870 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.16_3549 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.96 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 38499 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.203 REMARK 3 R VALUE (WORKING SET) : 0.202 REMARK 3 FREE R VALUE : 0.233 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1926 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.9600 - 4.8184 1.00 2789 147 0.1974 0.2192 REMARK 3 2 4.8184 - 3.8252 1.00 2665 141 0.1669 0.2106 REMARK 3 3 3.8252 - 3.3418 1.00 2631 138 0.1919 0.2188 REMARK 3 4 3.3418 - 3.0364 1.00 2615 138 0.2094 0.2290 REMARK 3 5 3.0364 - 2.8188 1.00 2611 137 0.2159 0.2674 REMARK 3 6 2.8188 - 2.6526 1.00 2596 137 0.2198 0.2591 REMARK 3 7 2.6526 - 2.5198 1.00 2612 137 0.2284 0.2325 REMARK 3 8 2.5198 - 2.4101 1.00 2586 136 0.2286 0.2781 REMARK 3 9 2.4101 - 2.3173 1.00 2579 136 0.2238 0.2471 REMARK 3 10 2.3173 - 2.2374 1.00 2586 136 0.2301 0.2650 REMARK 3 11 2.2374 - 2.1674 1.00 2575 136 0.2370 0.2811 REMARK 3 12 2.1674 - 2.1054 1.00 2581 136 0.2400 0.2672 REMARK 3 13 2.1054 - 2.0500 1.00 2574 135 0.2649 0.3206 REMARK 3 14 2.0500 - 2.0000 1.00 2573 136 0.2950 0.3268 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.670 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 55.84 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -31.8173 3.9970 -10.1678 REMARK 3 T TENSOR REMARK 3 T11: 0.3471 T22: 0.2769 REMARK 3 T33: 0.3128 T12: -0.0208 REMARK 3 T13: -0.0132 T23: -0.0162 REMARK 3 L TENSOR REMARK 3 L11: 1.5444 L22: 0.3851 REMARK 3 L33: 0.8866 L12: 0.2193 REMARK 3 L13: 0.4181 L23: -0.0067 REMARK 3 S TENSOR REMARK 3 S11: -0.0205 S12: 0.0243 S13: 0.1335 REMARK 3 S21: 0.0224 S22: 0.0238 S23: 0.0580 REMARK 3 S31: -0.0783 S32: 0.1343 S33: 0.0007 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6TFU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 14-NOV-19. REMARK 100 THE DEPOSITION ID IS D_1292104025. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-FEB-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9791 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38506 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 49.960 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 12.71 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.10 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 13.49 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.820 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5J9Z REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.52 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 32.5 % PEG3350, 100 MM MGSO4, 3 % REMARK 280 ETHYLEN GLYCOLE 7.2 MG/ML EGFR T790M/V948R (IN 100 MM NACL, 25 REMARK 280 MM TRIS-HCL, 10 % GLYCEROL, 1 MM TCEP, PH 8.0) 1 UL RESERVOIR + REMARK 280 1 UL PROTEIN SOLUTION), VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 38.21500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 44.96000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.61000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 44.96000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 38.21500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 40.61000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 690 REMARK 465 SER A 691 REMARK 465 HIS A 692 REMARK 465 MET A 693 REMARK 465 ALA A 694 REMARK 465 SER A 695 REMARK 465 GLY A 696 REMARK 465 GLU A 697 REMARK 465 ALA A 698 REMARK 465 PRO A 699 REMARK 465 GLU A 734 REMARK 465 GLY A 735 REMARK 465 LEU A 862 REMARK 465 GLY A 863 REMARK 465 ALA A 864 REMARK 465 GLU A 865 REMARK 465 GLU A 866 REMARK 465 LYS A 867 REMARK 465 GLU A 868 REMARK 465 TYR A 869 REMARK 465 HIS A 870 REMARK 465 ALA A 871 REMARK 465 GLU A 872 REMARK 465 GLY A 873 REMARK 465 GLY A 874 REMARK 465 LYS A 875 REMARK 465 GLY A 983 REMARK 465 ASP A 984 REMARK 465 GLU A 985 REMARK 465 ARG A 986 REMARK 465 MET A 987 REMARK 465 HIS A 988 REMARK 465 LEU A 989 REMARK 465 PRO A 990 REMARK 465 SER A 991 REMARK 465 PRO A 992 REMARK 465 THR A 993 REMARK 465 ASP A 994 REMARK 465 SER A 995 REMARK 465 ASN A 996 REMARK 465 PHE A 997 REMARK 465 TYR A 998 REMARK 465 ARG A 999 REMARK 465 ALA A 1000 REMARK 465 LEU A 1001 REMARK 465 MET A 1002 REMARK 465 ASP A 1003 REMARK 465 GLU A 1004 REMARK 465 GLU A 1005 REMARK 465 ASP A 1006 REMARK 465 MET A 1007 REMARK 465 ASP A 1008 REMARK 465 ASP A 1009 REMARK 465 VAL A 1010 REMARK 465 VAL A 1011 REMARK 465 ASP A 1012 REMARK 465 ALA A 1013 REMARK 465 ASP A 1014 REMARK 465 GLU A 1015 REMARK 465 TYR A 1016 REMARK 465 LEU A 1017 REMARK 465 ILE A 1018 REMARK 465 PRO A 1019 REMARK 465 GLN A 1020 REMARK 465 GLN A 1021 REMARK 465 GLY A 1022 REMARK 465 GLY B 690 REMARK 465 SER B 691 REMARK 465 HIS B 692 REMARK 465 MET B 693 REMARK 465 ALA B 694 REMARK 465 SER B 695 REMARK 465 GLY B 696 REMARK 465 GLU B 697 REMARK 465 ALA B 698 REMARK 465 PRO B 699 REMARK 465 ALA B 722 REMARK 465 ALA B 750 REMARK 465 THR B 751 REMARK 465 SER B 752 REMARK 465 PRO B 753 REMARK 465 LYS B 754 REMARK 465 ALA B 755 REMARK 465 ASN B 756 REMARK 465 LYS B 757 REMARK 465 LYS B 860 REMARK 465 LEU B 861 REMARK 465 LEU B 862 REMARK 465 GLY B 863 REMARK 465 ALA B 864 REMARK 465 GLU B 865 REMARK 465 GLU B 866 REMARK 465 LYS B 867 REMARK 465 GLU B 868 REMARK 465 TYR B 869 REMARK 465 HIS B 870 REMARK 465 ALA B 871 REMARK 465 GLU B 872 REMARK 465 GLY B 873 REMARK 465 GLY B 874 REMARK 465 LYS B 875 REMARK 465 GLU B 985 REMARK 465 ARG B 986 REMARK 465 MET B 987 REMARK 465 HIS B 988 REMARK 465 LEU B 989 REMARK 465 PRO B 990 REMARK 465 SER B 991 REMARK 465 PRO B 992 REMARK 465 THR B 993 REMARK 465 ASP B 994 REMARK 465 SER B 995 REMARK 465 ASN B 996 REMARK 465 PHE B 997 REMARK 465 TYR B 998 REMARK 465 ARG B 999 REMARK 465 ALA B 1000 REMARK 465 LEU B 1001 REMARK 465 MET B 1002 REMARK 465 ASP B 1003 REMARK 465 GLU B 1004 REMARK 465 GLU B 1005 REMARK 465 ASP B 1006 REMARK 465 MET B 1007 REMARK 465 ASP B 1008 REMARK 465 ASP B 1009 REMARK 465 VAL B 1010 REMARK 465 VAL B 1011 REMARK 465 ASP B 1012 REMARK 465 ALA B 1013 REMARK 465 ASP B 1014 REMARK 465 GLU B 1015 REMARK 465 TYR B 1016 REMARK 465 LEU B 1017 REMARK 465 ILE B 1018 REMARK 465 PRO B 1019 REMARK 465 GLN B 1020 REMARK 465 GLN B 1021 REMARK 465 GLY B 1022 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 700 CG OD1 ND2 REMARK 470 GLN A 701 CG CD OE1 NE2 REMARK 470 LYS A 713 CG CD CE NZ REMARK 470 LYS A 716 CG CD CE NZ REMARK 470 LYS A 728 CG CD CE NZ REMARK 470 GLU A 736 CG CD OE1 OE2 REMARK 470 LYS A 737 CG CD CE NZ REMARK 470 LYS A 739 CG CD CE NZ REMARK 470 ARG A 748 CG CD NE CZ NH1 NH2 REMARK 470 THR A 751 OG1 CG2 REMARK 470 LYS A 754 CG CD CE NZ REMARK 470 LYS A 757 CG CD CE NZ REMARK 470 GLU A 758 CG CD OE1 OE2 REMARK 470 ASP A 807 CG OD1 OD2 REMARK 470 ASN A 808 CG OD1 ND2 REMARK 470 ARG A 832 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 849 CG CD OE1 NE2 REMARK 470 LEU A 858 CG CD1 CD2 REMARK 470 LYS A 860 CG CD CE NZ REMARK 470 LEU A 861 CG CD1 CD2 REMARK 470 LYS A 913 CG CD CE NZ REMARK 470 GLU A 922 CG CD OE1 OE2 REMARK 470 LYS A 929 CG CD CE NZ REMARK 470 LYS A 949 CG CD CE NZ REMARK 470 ASP A 956 CG OD1 OD2 REMARK 470 LYS A 960 CG CD CE NZ REMARK 470 ARG A 962 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 970 CG CD CE NZ REMARK 470 GLN A 982 CG CD OE1 NE2 REMARK 470 GLN B 701 CG CD OE1 NE2 REMARK 470 ARG B 705 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 709 CG CD OE1 OE2 REMARK 470 LYS B 713 CG CD CE NZ REMARK 470 LYS B 716 CG CD CE NZ REMARK 470 PHE B 723 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU B 734 CG CD OE1 OE2 REMARK 470 LYS B 737 CG CD CE NZ REMARK 470 LYS B 739 CG CD CE NZ REMARK 470 ARG B 748 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 758 CG CD OE1 OE2 REMARK 470 ILE B 759 CG1 CG2 CD1 REMARK 470 LEU B 760 CG CD1 CD2 REMARK 470 ASP B 761 CG OD1 OD2 REMARK 470 GLU B 762 CG CD OE1 OE2 REMARK 470 ASP B 807 CG OD1 OD2 REMARK 470 ASN B 808 CG OD1 ND2 REMARK 470 GLN B 849 CG CD OE1 NE2 REMARK 470 LEU B 858 CG CD1 CD2 REMARK 470 VAL B 876 CG1 CG2 REMARK 470 GLU B 922 CG CD OE1 OE2 REMARK 470 LYS B 929 CG CD CE NZ REMARK 470 GLU B 931 CG CD OE1 OE2 REMARK 470 ASP B 942 CG OD1 OD2 REMARK 470 MET B 945 CG SD CE REMARK 470 ASP B 956 CG OD1 OD2 REMARK 470 GLN B 982 CG CD OE1 NE2 REMARK 470 ASP B 984 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 753 31.12 -92.39 REMARK 500 THR A 783 -136.50 -125.25 REMARK 500 ARG A 836 -10.47 79.00 REMARK 500 ASP A 837 44.85 -147.22 REMARK 500 ILE B 715 -60.95 -123.32 REMARK 500 ARG B 748 13.66 -65.69 REMARK 500 THR B 783 -125.93 -134.39 REMARK 500 ARG B 836 -17.47 80.37 REMARK 500 ASP B 837 48.89 -143.33 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue N7K A 1101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 1102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 1103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 1102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 1103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide N7K B 1101 and CYS B REMARK 800 797 DBREF 6TFU A 695 1022 UNP P00533 EGFR_HUMAN 695 1022 DBREF 6TFU B 695 1022 UNP P00533 EGFR_HUMAN 695 1022 SEQADV 6TFU GLY A 690 UNP P00533 EXPRESSION TAG SEQADV 6TFU SER A 691 UNP P00533 EXPRESSION TAG SEQADV 6TFU HIS A 692 UNP P00533 EXPRESSION TAG SEQADV 6TFU MET A 693 UNP P00533 EXPRESSION TAG SEQADV 6TFU ALA A 694 UNP P00533 EXPRESSION TAG SEQADV 6TFU MET A 790 UNP P00533 THR 790 ENGINEERED MUTATION SEQADV 6TFU ARG A 948 UNP P00533 VAL 948 ENGINEERED MUTATION SEQADV 6TFU GLY B 690 UNP P00533 EXPRESSION TAG SEQADV 6TFU SER B 691 UNP P00533 EXPRESSION TAG SEQADV 6TFU HIS B 692 UNP P00533 EXPRESSION TAG SEQADV 6TFU MET B 693 UNP P00533 EXPRESSION TAG SEQADV 6TFU ALA B 694 UNP P00533 EXPRESSION TAG SEQADV 6TFU MET B 790 UNP P00533 THR 790 ENGINEERED MUTATION SEQADV 6TFU ARG B 948 UNP P00533 VAL 948 ENGINEERED MUTATION SEQRES 1 A 333 GLY SER HIS MET ALA SER GLY GLU ALA PRO ASN GLN ALA SEQRES 2 A 333 LEU LEU ARG ILE LEU LYS GLU THR GLU PHE LYS LYS ILE SEQRES 3 A 333 LYS VAL LEU GLY SER GLY ALA PHE GLY THR VAL TYR LYS SEQRES 4 A 333 GLY LEU TRP ILE PRO GLU GLY GLU LYS VAL LYS ILE PRO SEQRES 5 A 333 VAL ALA ILE LYS GLU LEU ARG GLU ALA THR SER PRO LYS SEQRES 6 A 333 ALA ASN LYS GLU ILE LEU ASP GLU ALA TYR VAL MET ALA SEQRES 7 A 333 SER VAL ASP ASN PRO HIS VAL CYS ARG LEU LEU GLY ILE SEQRES 8 A 333 CYS LEU THR SER THR VAL GLN LEU ILE MET GLN LEU MET SEQRES 9 A 333 PRO PHE GLY CYS LEU LEU ASP TYR VAL ARG GLU HIS LYS SEQRES 10 A 333 ASP ASN ILE GLY SER GLN TYR LEU LEU ASN TRP CYS VAL SEQRES 11 A 333 GLN ILE ALA LYS GLY MET ASN TYR LEU GLU ASP ARG ARG SEQRES 12 A 333 LEU VAL HIS ARG ASP LEU ALA ALA ARG ASN VAL LEU VAL SEQRES 13 A 333 LYS THR PRO GLN HIS VAL LYS ILE THR ASP PHE GLY LEU SEQRES 14 A 333 ALA LYS LEU LEU GLY ALA GLU GLU LYS GLU TYR HIS ALA SEQRES 15 A 333 GLU GLY GLY LYS VAL PRO ILE LYS TRP MET ALA LEU GLU SEQRES 16 A 333 SER ILE LEU HIS ARG ILE TYR THR HIS GLN SER ASP VAL SEQRES 17 A 333 TRP SER TYR GLY VAL THR VAL TRP GLU LEU MET THR PHE SEQRES 18 A 333 GLY SER LYS PRO TYR ASP GLY ILE PRO ALA SER GLU ILE SEQRES 19 A 333 SER SER ILE LEU GLU LYS GLY GLU ARG LEU PRO GLN PRO SEQRES 20 A 333 PRO ILE CYS THR ILE ASP VAL TYR MET ILE MET ARG LYS SEQRES 21 A 333 CYS TRP MET ILE ASP ALA ASP SER ARG PRO LYS PHE ARG SEQRES 22 A 333 GLU LEU ILE ILE GLU PHE SER LYS MET ALA ARG ASP PRO SEQRES 23 A 333 GLN ARG TYR LEU VAL ILE GLN GLY ASP GLU ARG MET HIS SEQRES 24 A 333 LEU PRO SER PRO THR ASP SER ASN PHE TYR ARG ALA LEU SEQRES 25 A 333 MET ASP GLU GLU ASP MET ASP ASP VAL VAL ASP ALA ASP SEQRES 26 A 333 GLU TYR LEU ILE PRO GLN GLN GLY SEQRES 1 B 333 GLY SER HIS MET ALA SER GLY GLU ALA PRO ASN GLN ALA SEQRES 2 B 333 LEU LEU ARG ILE LEU LYS GLU THR GLU PHE LYS LYS ILE SEQRES 3 B 333 LYS VAL LEU GLY SER GLY ALA PHE GLY THR VAL TYR LYS SEQRES 4 B 333 GLY LEU TRP ILE PRO GLU GLY GLU LYS VAL LYS ILE PRO SEQRES 5 B 333 VAL ALA ILE LYS GLU LEU ARG GLU ALA THR SER PRO LYS SEQRES 6 B 333 ALA ASN LYS GLU ILE LEU ASP GLU ALA TYR VAL MET ALA SEQRES 7 B 333 SER VAL ASP ASN PRO HIS VAL CYS ARG LEU LEU GLY ILE SEQRES 8 B 333 CYS LEU THR SER THR VAL GLN LEU ILE MET GLN LEU MET SEQRES 9 B 333 PRO PHE GLY CYS LEU LEU ASP TYR VAL ARG GLU HIS LYS SEQRES 10 B 333 ASP ASN ILE GLY SER GLN TYR LEU LEU ASN TRP CYS VAL SEQRES 11 B 333 GLN ILE ALA LYS GLY MET ASN TYR LEU GLU ASP ARG ARG SEQRES 12 B 333 LEU VAL HIS ARG ASP LEU ALA ALA ARG ASN VAL LEU VAL SEQRES 13 B 333 LYS THR PRO GLN HIS VAL LYS ILE THR ASP PHE GLY LEU SEQRES 14 B 333 ALA LYS LEU LEU GLY ALA GLU GLU LYS GLU TYR HIS ALA SEQRES 15 B 333 GLU GLY GLY LYS VAL PRO ILE LYS TRP MET ALA LEU GLU SEQRES 16 B 333 SER ILE LEU HIS ARG ILE TYR THR HIS GLN SER ASP VAL SEQRES 17 B 333 TRP SER TYR GLY VAL THR VAL TRP GLU LEU MET THR PHE SEQRES 18 B 333 GLY SER LYS PRO TYR ASP GLY ILE PRO ALA SER GLU ILE SEQRES 19 B 333 SER SER ILE LEU GLU LYS GLY GLU ARG LEU PRO GLN PRO SEQRES 20 B 333 PRO ILE CYS THR ILE ASP VAL TYR MET ILE MET ARG LYS SEQRES 21 B 333 CYS TRP MET ILE ASP ALA ASP SER ARG PRO LYS PHE ARG SEQRES 22 B 333 GLU LEU ILE ILE GLU PHE SER LYS MET ALA ARG ASP PRO SEQRES 23 B 333 GLN ARG TYR LEU VAL ILE GLN GLY ASP GLU ARG MET HIS SEQRES 24 B 333 LEU PRO SER PRO THR ASP SER ASN PHE TYR ARG ALA LEU SEQRES 25 B 333 MET ASP GLU GLU ASP MET ASP ASP VAL VAL ASP ALA ASP SEQRES 26 B 333 GLU TYR LEU ILE PRO GLN GLN GLY HET N7K A1101 37 HET SO4 A1102 5 HET SO4 A1103 5 HET N7K B1101 37 HET SO4 B1102 5 HET SO4 B1103 5 HETNAM N7K ~{N}-[3-[4-[[1-(PHENYLMETHYL)INDAZOL-5-YL]AMINO]-7~{H}- HETNAM 2 N7K PYRROLO[2,3-D]PYRIMIDIN-5-YL]PHENYL]PROPANAMIDE HETNAM SO4 SULFATE ION FORMUL 3 N7K 2(C29 H25 N7 O) FORMUL 4 SO4 4(O4 S 2-) FORMUL 9 HOH *69(H2 O) HELIX 1 AA1 ASN A 700 LEU A 704 5 5 HELIX 2 AA2 ALA A 755 VAL A 769 1 15 HELIX 3 AA3 CYS A 797 HIS A 805 1 9 HELIX 4 AA4 LYS A 806 ILE A 809 5 4 HELIX 5 AA5 GLY A 810 ARG A 831 1 22 HELIX 6 AA6 ALA A 839 ARG A 841 5 3 HELIX 7 AA7 PRO A 877 MET A 881 5 5 HELIX 8 AA8 ALA A 882 ARG A 889 1 8 HELIX 9 AA9 THR A 892 THR A 909 1 18 HELIX 10 AB1 PRO A 919 SER A 921 5 3 HELIX 11 AB2 GLU A 922 LYS A 929 1 8 HELIX 12 AB3 THR A 940 TRP A 951 1 12 HELIX 13 AB4 ASP A 954 ARG A 958 5 5 HELIX 14 AB5 LYS A 960 ASP A 974 1 15 HELIX 15 AB6 ASP A 974 LEU A 979 1 6 HELIX 16 AB7 ASN B 700 LEU B 704 5 5 HELIX 17 AB8 ILE B 759 VAL B 769 1 11 HELIX 18 AB9 CYS B 797 HIS B 805 1 9 HELIX 19 AC1 LYS B 806 ILE B 809 5 4 HELIX 20 AC2 GLY B 810 ARG B 831 1 22 HELIX 21 AC3 ALA B 839 ARG B 841 5 3 HELIX 22 AC4 PRO B 877 MET B 881 5 5 HELIX 23 AC5 ALA B 882 ARG B 889 1 8 HELIX 24 AC6 THR B 892 THR B 909 1 18 HELIX 25 AC7 PRO B 919 SER B 921 5 3 HELIX 26 AC8 GLU B 922 LYS B 929 1 8 HELIX 27 AC9 THR B 940 TRP B 951 1 12 HELIX 28 AD1 ASP B 954 ARG B 958 5 5 HELIX 29 AD2 LYS B 960 ASP B 974 1 15 HELIX 30 AD3 ASP B 974 LEU B 979 1 6 SHEET 1 AA1 6 ARG A 705 ILE A 706 0 SHEET 2 AA1 6 GLY A 779 LEU A 782 1 O ILE A 780 N ARG A 705 SHEET 3 AA1 6 VAL A 786 GLN A 791 -1 O ILE A 789 N GLY A 779 SHEET 4 AA1 6 ILE A 740 LEU A 747 -1 N ALA A 743 O MET A 790 SHEET 5 AA1 6 GLY A 724 TRP A 731 -1 N THR A 725 O GLU A 746 SHEET 6 AA1 6 PHE A 712 SER A 720 -1 N LEU A 718 O VAL A 726 SHEET 1 AA2 2 VAL A 843 THR A 847 0 SHEET 2 AA2 2 HIS A 850 ILE A 853 -1 O LYS A 852 N LEU A 844 SHEET 1 AA3 6 ARG B 705 ILE B 706 0 SHEET 2 AA3 6 GLY B 779 LEU B 782 1 O ILE B 780 N ARG B 705 SHEET 3 AA3 6 VAL B 786 GLN B 791 -1 O ILE B 789 N GLY B 779 SHEET 4 AA3 6 ILE B 740 LEU B 747 -1 N ALA B 743 O MET B 790 SHEET 5 AA3 6 GLY B 724 TRP B 731 -1 N GLY B 729 O VAL B 742 SHEET 6 AA3 6 PHE B 712 GLY B 719 -1 N GLY B 719 O VAL B 726 SHEET 1 AA4 2 VAL B 843 THR B 847 0 SHEET 2 AA4 2 HIS B 850 ILE B 853 -1 O LYS B 852 N LEU B 844 LINK SG CYS A 797 CBJ N7K A1101 1555 1555 1.82 LINK SG CYS B 797 CBJ N7K B1101 1555 1555 1.82 SITE 1 AC1 15 VAL A 726 ALA A 743 LYS A 745 CYS A 775 SITE 2 AC1 15 MET A 790 GLN A 791 MET A 793 CYS A 797 SITE 3 AC1 15 ASP A 800 ARG A 841 LEU A 844 THR A 854 SITE 4 AC1 15 ASP A 855 PHE A 856 HOH A1223 SITE 1 AC2 7 GLN A 791 LYS A 846 HIS A 850 LYS A 852 SITE 2 AC2 7 LYS B 846 LYS B 852 HOH B1202 SITE 1 AC3 6 LYS A 846 THR A 847 HIS A 850 ARG B 776 SITE 2 AC3 6 LEU B 778 GLN B 791 SITE 1 AC4 7 ARG A 776 LEU A 778 HOH A1211 LYS B 846 SITE 2 AC4 7 THR B 847 HIS B 850 HOH B1202 SITE 1 AC5 3 LEU B 799 ARG B 803 LYS B 913 SITE 1 AC6 21 VAL B 726 ALA B 743 LYS B 745 MET B 766 SITE 2 AC6 21 CYS B 775 LEU B 788 MET B 790 GLN B 791 SITE 3 AC6 21 MET B 793 GLY B 796 LEU B 798 LEU B 799 SITE 4 AC6 21 ASP B 800 TYR B 801 ARG B 841 VAL B 843 SITE 5 AC6 21 LEU B 844 THR B 854 ASP B 855 PHE B 856 SITE 6 AC6 21 HOH B1221 CRYST1 76.430 81.220 89.920 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013084 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012312 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011121 0.00000