HEADER TRANSFERASE 14-NOV-19 6TFV TITLE CRYSTAL STRUCTURE OF EGFR T790M/V948R IN COMPLEX WITH COVALENT TITLE 2 PYRROLOPYRIMIDINE 18B COMPND MOL_ID: 1; COMPND 2 MOLECULE: EPIDERMAL GROWTH FACTOR RECEPTOR; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PROTO-ONCOGENE C-ERBB-1,RECEPTOR TYROSINE-PROTEIN KINASE COMPND 5 ERBB-1; COMPND 6 EC: 2.7.10.1; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: EGFR, ERBB, ERBB1, HER1; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108 KEYWDS HER2, EGFR, COVALENT INHIBITORS, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR J.NIGGENABER,M.P.MUELLER,D.RAUH REVDAT 3 24-JAN-24 6TFV 1 REMARK REVDAT 2 04-NOV-20 6TFV 1 JRNL REVDAT 1 30-SEP-20 6TFV 0 JRNL AUTH J.LATEGAHN,J.HARDICK,T.GRABE,J.NIGGENABER,K.JEYAKUMAR, JRNL AUTH 2 M.KEUL,H.L.TUMBRINK,C.BECKER,L.HODSON,T.KIRSCHNER, JRNL AUTH 3 P.KLOVEKORN,J.KETZER,M.BAUMANN,S.TERHEYDEN,A.UNGER, JRNL AUTH 4 J.WEISNER,M.P.MULLER,W.A.L.VAN OTTERLO,S.BAUER,D.RAUH JRNL TITL TARGETING HER2-INSYVMA WITH COVALENT INHIBITORS-A FOCUSED JRNL TITL 2 COMPOUND SCREENING AND STRUCTURE-BASED DESIGN APPROACH. JRNL REF J.MED.CHEM. V. 63 11725 2020 JRNL REFN ISSN 0022-2623 JRNL PMID 32931277 JRNL DOI 10.1021/ACS.JMEDCHEM.0C00870 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.16_3549 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.59 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 91517 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.203 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4577 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.5800 - 4.6595 1.00 3127 165 0.1790 0.1875 REMARK 3 2 4.6595 - 3.6988 1.00 2986 157 0.1541 0.1772 REMARK 3 3 3.6988 - 3.2314 1.00 2967 156 0.1821 0.1948 REMARK 3 4 3.2314 - 2.9360 1.00 2925 154 0.1904 0.2121 REMARK 3 5 2.9360 - 2.7255 1.00 2932 155 0.1945 0.2041 REMARK 3 6 2.7255 - 2.5649 1.00 2909 153 0.1897 0.2171 REMARK 3 7 2.5649 - 2.4364 1.00 2931 154 0.1867 0.1859 REMARK 3 8 2.4364 - 2.3304 1.00 2898 153 0.1793 0.2331 REMARK 3 9 2.3304 - 2.2407 1.00 2901 152 0.1824 0.2092 REMARK 3 10 2.2407 - 2.1633 1.00 2915 154 0.1772 0.1987 REMARK 3 11 2.1633 - 2.0957 1.00 2897 152 0.1805 0.2075 REMARK 3 12 2.0957 - 2.0358 1.00 2876 152 0.1795 0.1993 REMARK 3 13 2.0358 - 1.9822 1.00 2890 152 0.1815 0.2030 REMARK 3 14 1.9822 - 1.9338 1.00 2892 152 0.1767 0.1926 REMARK 3 15 1.9338 - 1.8899 1.00 2891 152 0.1742 0.1960 REMARK 3 16 1.8899 - 1.8496 1.00 2849 150 0.1839 0.1993 REMARK 3 17 1.8496 - 1.8126 1.00 2883 152 0.1799 0.2175 REMARK 3 18 1.8126 - 1.7784 1.00 2891 152 0.1879 0.1992 REMARK 3 19 1.7784 - 1.7467 1.00 2886 152 0.1835 0.2040 REMARK 3 20 1.7467 - 1.7171 1.00 2857 150 0.1918 0.2388 REMARK 3 21 1.7171 - 1.6894 1.00 2879 152 0.1954 0.2167 REMARK 3 22 1.6894 - 1.6634 1.00 2858 150 0.1939 0.2011 REMARK 3 23 1.6634 - 1.6389 1.00 2868 151 0.2102 0.2228 REMARK 3 24 1.6389 - 1.6158 1.00 2878 152 0.2076 0.2446 REMARK 3 25 1.6158 - 1.5940 1.00 2857 150 0.2068 0.2611 REMARK 3 26 1.5940 - 1.5733 1.00 2879 151 0.2175 0.2740 REMARK 3 27 1.5733 - 1.5536 1.00 2857 151 0.2321 0.2569 REMARK 3 28 1.5536 - 1.5349 1.00 2876 151 0.2370 0.2453 REMARK 3 29 1.5349 - 1.5171 1.00 2853 151 0.2518 0.2851 REMARK 3 30 1.5171 - 1.5000 1.00 2832 149 0.2597 0.2841 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.140 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.360 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.73 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -31.9350 5.3466 -10.4565 REMARK 3 T TENSOR REMARK 3 T11: 0.1580 T22: 0.1118 REMARK 3 T33: 0.1191 T12: -0.0072 REMARK 3 T13: 0.0038 T23: -0.0014 REMARK 3 L TENSOR REMARK 3 L11: 1.4412 L22: 0.2990 REMARK 3 L33: 0.8671 L12: -0.0149 REMARK 3 L13: 0.1834 L23: 0.0607 REMARK 3 S TENSOR REMARK 3 S11: -0.0316 S12: -0.0333 S13: -0.0615 REMARK 3 S21: 0.0091 S22: 0.0115 S23: -0.0037 REMARK 3 S31: 0.0335 S32: 0.1446 S33: 0.0200 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6TFV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 14-NOV-19. REMARK 100 THE DEPOSITION ID IS D_1292104058. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-NOV-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9999 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 91525 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 47.590 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.9100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.60 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.66 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.430 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5J9Z REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.44 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 27.5 % PEG3350, 100 MM MGSO4, 4 % REMARK 280 ETHYLEN GLYCOLE 7.0 MG/ML EGFR T790M/V948R (IN 100 MM NACL, 25 REMARK 280 MM TRIS-HCL, 10 % GLYCEROL, 1 MM TCEP, PH 8.0) 1 UL RESERVOIR + REMARK 280 1 UL PROTEIN SOLUTION), VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 38.20000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 44.95000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.30000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 44.95000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 38.20000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 41.30000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 690 REMARK 465 SER A 691 REMARK 465 HIS A 692 REMARK 465 MET A 693 REMARK 465 ALA A 694 REMARK 465 SER A 695 REMARK 465 GLY A 696 REMARK 465 GLU A 697 REMARK 465 ALA A 698 REMARK 465 PRO A 699 REMARK 465 PRO A 753 REMARK 465 ALA A 859 REMARK 465 LYS A 860 REMARK 465 LEU A 861 REMARK 465 LEU A 862 REMARK 465 GLY A 863 REMARK 465 ALA A 864 REMARK 465 GLU A 865 REMARK 465 GLU A 866 REMARK 465 LYS A 867 REMARK 465 GLU A 868 REMARK 465 TYR A 869 REMARK 465 HIS A 870 REMARK 465 ALA A 871 REMARK 465 GLU A 872 REMARK 465 GLY A 873 REMARK 465 GLY A 874 REMARK 465 ARG A 986 REMARK 465 MET A 987 REMARK 465 HIS A 988 REMARK 465 LEU A 989 REMARK 465 PRO A 990 REMARK 465 SER A 991 REMARK 465 PRO A 992 REMARK 465 THR A 993 REMARK 465 ASP A 994 REMARK 465 SER A 995 REMARK 465 ASN A 996 REMARK 465 PHE A 997 REMARK 465 TYR A 998 REMARK 465 ARG A 999 REMARK 465 ALA A 1000 REMARK 465 LEU A 1001 REMARK 465 MET A 1002 REMARK 465 ASP A 1003 REMARK 465 GLU A 1004 REMARK 465 GLU A 1005 REMARK 465 ASP A 1006 REMARK 465 MET A 1007 REMARK 465 ASP A 1008 REMARK 465 ASP A 1009 REMARK 465 VAL A 1010 REMARK 465 VAL A 1011 REMARK 465 ASP A 1012 REMARK 465 ALA A 1013 REMARK 465 ASP A 1014 REMARK 465 GLU A 1015 REMARK 465 TYR A 1016 REMARK 465 LEU A 1017 REMARK 465 ILE A 1018 REMARK 465 PRO A 1019 REMARK 465 GLN A 1020 REMARK 465 GLN A 1021 REMARK 465 GLY A 1022 REMARK 465 GLY B 690 REMARK 465 SER B 691 REMARK 465 HIS B 692 REMARK 465 MET B 693 REMARK 465 ALA B 694 REMARK 465 SER B 695 REMARK 465 GLY B 696 REMARK 465 GLU B 697 REMARK 465 THR B 751 REMARK 465 SER B 752 REMARK 465 PRO B 753 REMARK 465 ALA B 859 REMARK 465 LYS B 860 REMARK 465 LEU B 861 REMARK 465 LEU B 862 REMARK 465 GLY B 863 REMARK 465 ALA B 864 REMARK 465 GLU B 865 REMARK 465 GLU B 866 REMARK 465 LYS B 867 REMARK 465 GLU B 868 REMARK 465 TYR B 869 REMARK 465 HIS B 870 REMARK 465 ALA B 871 REMARK 465 GLU B 872 REMARK 465 GLY B 873 REMARK 465 GLY B 874 REMARK 465 GLU B 985 REMARK 465 ARG B 986 REMARK 465 MET B 987 REMARK 465 HIS B 988 REMARK 465 LEU B 989 REMARK 465 PRO B 990 REMARK 465 SER B 991 REMARK 465 PRO B 992 REMARK 465 THR B 993 REMARK 465 ASP B 994 REMARK 465 SER B 995 REMARK 465 ASN B 996 REMARK 465 PHE B 997 REMARK 465 TYR B 998 REMARK 465 ARG B 999 REMARK 465 ALA B 1000 REMARK 465 LEU B 1001 REMARK 465 MET B 1002 REMARK 465 ASP B 1003 REMARK 465 GLU B 1004 REMARK 465 GLU B 1005 REMARK 465 ASP B 1006 REMARK 465 MET B 1007 REMARK 465 ASP B 1008 REMARK 465 ASP B 1009 REMARK 465 VAL B 1010 REMARK 465 VAL B 1011 REMARK 465 ASP B 1012 REMARK 465 ALA B 1013 REMARK 465 ASP B 1014 REMARK 465 GLU B 1015 REMARK 465 TYR B 1016 REMARK 465 LEU B 1017 REMARK 465 ILE B 1018 REMARK 465 PRO B 1019 REMARK 465 GLN B 1020 REMARK 465 GLN B 1021 REMARK 465 GLY B 1022 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 701 CG CD OE1 NE2 REMARK 470 LYS A 713 CG CD CE NZ REMARK 470 LYS A 737 CG CD CE NZ REMARK 470 LYS A 754 CG CD CE NZ REMARK 470 LYS A 757 CG CD CE NZ REMARK 470 GLU A 758 CG CD OE1 OE2 REMARK 470 GLU A 762 CG CD OE1 OE2 REMARK 470 LEU A 858 CG CD1 CD2 REMARK 470 LYS A 875 CG CD CE NZ REMARK 470 GLU A 922 CG CD OE1 OE2 REMARK 470 LYS B 713 CG CD CE NZ REMARK 470 GLU B 734 CG CD OE1 OE2 REMARK 470 LYS B 737 CG CD CE NZ REMARK 470 LYS B 754 CG CD CE NZ REMARK 470 ASN B 756 CG OD1 ND2 REMARK 470 LYS B 757 CG CD CE NZ REMARK 470 GLU B 758 CG CD OE1 OE2 REMARK 470 LEU B 858 CG CD1 CD2 REMARK 470 LYS B 875 CG CD CE NZ REMARK 470 ASP B 956 CG OD1 OD2 REMARK 470 GLN B 982 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 783 -134.03 -134.58 REMARK 500 ARG A 836 -13.14 81.21 REMARK 500 ASP A 837 43.94 -143.52 REMARK 500 THR B 783 -130.03 -125.65 REMARK 500 ARG B 836 -9.97 81.14 REMARK 500 ASP B 837 46.28 -145.50 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue N7Q A 1101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 1102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 1103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 1104 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 1105 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 1101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 1102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 1103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 1104 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide N7Q B 1105 and CYS B REMARK 800 797 DBREF 6TFV A 695 1022 UNP P00533 EGFR_HUMAN 695 1022 DBREF 6TFV B 695 1022 UNP P00533 EGFR_HUMAN 695 1022 SEQADV 6TFV GLY A 690 UNP P00533 EXPRESSION TAG SEQADV 6TFV SER A 691 UNP P00533 EXPRESSION TAG SEQADV 6TFV HIS A 692 UNP P00533 EXPRESSION TAG SEQADV 6TFV MET A 693 UNP P00533 EXPRESSION TAG SEQADV 6TFV ALA A 694 UNP P00533 EXPRESSION TAG SEQADV 6TFV MET A 790 UNP P00533 THR 790 ENGINEERED MUTATION SEQADV 6TFV ARG A 948 UNP P00533 VAL 948 ENGINEERED MUTATION SEQADV 6TFV GLY B 690 UNP P00533 EXPRESSION TAG SEQADV 6TFV SER B 691 UNP P00533 EXPRESSION TAG SEQADV 6TFV HIS B 692 UNP P00533 EXPRESSION TAG SEQADV 6TFV MET B 693 UNP P00533 EXPRESSION TAG SEQADV 6TFV ALA B 694 UNP P00533 EXPRESSION TAG SEQADV 6TFV MET B 790 UNP P00533 THR 790 ENGINEERED MUTATION SEQADV 6TFV ARG B 948 UNP P00533 VAL 948 ENGINEERED MUTATION SEQRES 1 A 333 GLY SER HIS MET ALA SER GLY GLU ALA PRO ASN GLN ALA SEQRES 2 A 333 LEU LEU ARG ILE LEU LYS GLU THR GLU PHE LYS LYS ILE SEQRES 3 A 333 LYS VAL LEU GLY SER GLY ALA PHE GLY THR VAL TYR LYS SEQRES 4 A 333 GLY LEU TRP ILE PRO GLU GLY GLU LYS VAL LYS ILE PRO SEQRES 5 A 333 VAL ALA ILE LYS GLU LEU ARG GLU ALA THR SER PRO LYS SEQRES 6 A 333 ALA ASN LYS GLU ILE LEU ASP GLU ALA TYR VAL MET ALA SEQRES 7 A 333 SER VAL ASP ASN PRO HIS VAL CYS ARG LEU LEU GLY ILE SEQRES 8 A 333 CYS LEU THR SER THR VAL GLN LEU ILE MET GLN LEU MET SEQRES 9 A 333 PRO PHE GLY CYS LEU LEU ASP TYR VAL ARG GLU HIS LYS SEQRES 10 A 333 ASP ASN ILE GLY SER GLN TYR LEU LEU ASN TRP CYS VAL SEQRES 11 A 333 GLN ILE ALA LYS GLY MET ASN TYR LEU GLU ASP ARG ARG SEQRES 12 A 333 LEU VAL HIS ARG ASP LEU ALA ALA ARG ASN VAL LEU VAL SEQRES 13 A 333 LYS THR PRO GLN HIS VAL LYS ILE THR ASP PHE GLY LEU SEQRES 14 A 333 ALA LYS LEU LEU GLY ALA GLU GLU LYS GLU TYR HIS ALA SEQRES 15 A 333 GLU GLY GLY LYS VAL PRO ILE LYS TRP MET ALA LEU GLU SEQRES 16 A 333 SER ILE LEU HIS ARG ILE TYR THR HIS GLN SER ASP VAL SEQRES 17 A 333 TRP SER TYR GLY VAL THR VAL TRP GLU LEU MET THR PHE SEQRES 18 A 333 GLY SER LYS PRO TYR ASP GLY ILE PRO ALA SER GLU ILE SEQRES 19 A 333 SER SER ILE LEU GLU LYS GLY GLU ARG LEU PRO GLN PRO SEQRES 20 A 333 PRO ILE CYS THR ILE ASP VAL TYR MET ILE MET ARG LYS SEQRES 21 A 333 CYS TRP MET ILE ASP ALA ASP SER ARG PRO LYS PHE ARG SEQRES 22 A 333 GLU LEU ILE ILE GLU PHE SER LYS MET ALA ARG ASP PRO SEQRES 23 A 333 GLN ARG TYR LEU VAL ILE GLN GLY ASP GLU ARG MET HIS SEQRES 24 A 333 LEU PRO SER PRO THR ASP SER ASN PHE TYR ARG ALA LEU SEQRES 25 A 333 MET ASP GLU GLU ASP MET ASP ASP VAL VAL ASP ALA ASP SEQRES 26 A 333 GLU TYR LEU ILE PRO GLN GLN GLY SEQRES 1 B 333 GLY SER HIS MET ALA SER GLY GLU ALA PRO ASN GLN ALA SEQRES 2 B 333 LEU LEU ARG ILE LEU LYS GLU THR GLU PHE LYS LYS ILE SEQRES 3 B 333 LYS VAL LEU GLY SER GLY ALA PHE GLY THR VAL TYR LYS SEQRES 4 B 333 GLY LEU TRP ILE PRO GLU GLY GLU LYS VAL LYS ILE PRO SEQRES 5 B 333 VAL ALA ILE LYS GLU LEU ARG GLU ALA THR SER PRO LYS SEQRES 6 B 333 ALA ASN LYS GLU ILE LEU ASP GLU ALA TYR VAL MET ALA SEQRES 7 B 333 SER VAL ASP ASN PRO HIS VAL CYS ARG LEU LEU GLY ILE SEQRES 8 B 333 CYS LEU THR SER THR VAL GLN LEU ILE MET GLN LEU MET SEQRES 9 B 333 PRO PHE GLY CYS LEU LEU ASP TYR VAL ARG GLU HIS LYS SEQRES 10 B 333 ASP ASN ILE GLY SER GLN TYR LEU LEU ASN TRP CYS VAL SEQRES 11 B 333 GLN ILE ALA LYS GLY MET ASN TYR LEU GLU ASP ARG ARG SEQRES 12 B 333 LEU VAL HIS ARG ASP LEU ALA ALA ARG ASN VAL LEU VAL SEQRES 13 B 333 LYS THR PRO GLN HIS VAL LYS ILE THR ASP PHE GLY LEU SEQRES 14 B 333 ALA LYS LEU LEU GLY ALA GLU GLU LYS GLU TYR HIS ALA SEQRES 15 B 333 GLU GLY GLY LYS VAL PRO ILE LYS TRP MET ALA LEU GLU SEQRES 16 B 333 SER ILE LEU HIS ARG ILE TYR THR HIS GLN SER ASP VAL SEQRES 17 B 333 TRP SER TYR GLY VAL THR VAL TRP GLU LEU MET THR PHE SEQRES 18 B 333 GLY SER LYS PRO TYR ASP GLY ILE PRO ALA SER GLU ILE SEQRES 19 B 333 SER SER ILE LEU GLU LYS GLY GLU ARG LEU PRO GLN PRO SEQRES 20 B 333 PRO ILE CYS THR ILE ASP VAL TYR MET ILE MET ARG LYS SEQRES 21 B 333 CYS TRP MET ILE ASP ALA ASP SER ARG PRO LYS PHE ARG SEQRES 22 B 333 GLU LEU ILE ILE GLU PHE SER LYS MET ALA ARG ASP PRO SEQRES 23 B 333 GLN ARG TYR LEU VAL ILE GLN GLY ASP GLU ARG MET HIS SEQRES 24 B 333 LEU PRO SER PRO THR ASP SER ASN PHE TYR ARG ALA LEU SEQRES 25 B 333 MET ASP GLU GLU ASP MET ASP ASP VAL VAL ASP ALA ASP SEQRES 26 B 333 GLU TYR LEU ILE PRO GLN GLN GLY HET N7Q A1101 40 HET EDO A1102 10 HET EDO A1103 10 HET SO4 A1104 5 HET SO4 A1105 5 HET SO4 B1101 5 HET SO4 B1102 5 HET EDO B1103 10 HET CL B1104 1 HET N7Q B1105 40 HETNAM N7Q ~{N}-[5-[4-[[3-CHLORANYL-4-(PYRIDIN-2-YLMETHOXY) HETNAM 2 N7Q PHENYL]AMINO]-7~{H}-PYRROLO[2,3-D]PYRIMIDIN-5-YL]-2- HETNAM 3 N7Q (2-HYDROXYETHYLOXY)PHENYL]PROPANAMIDE HETNAM EDO 1,2-ETHANEDIOL HETNAM SO4 SULFATE ION HETNAM CL CHLORIDE ION HETSYN EDO ETHYLENE GLYCOL FORMUL 3 N7Q 2(C29 H27 CL N6 O4) FORMUL 4 EDO 3(C2 H6 O2) FORMUL 6 SO4 4(O4 S 2-) FORMUL 11 CL CL 1- FORMUL 13 HOH *251(H2 O) HELIX 1 AA1 ASN A 700 LEU A 704 5 5 HELIX 2 AA2 LYS A 708 THR A 710 5 3 HELIX 3 AA3 ALA A 755 VAL A 769 1 15 HELIX 4 AA4 CYS A 797 HIS A 805 1 9 HELIX 5 AA5 GLY A 810 ARG A 831 1 22 HELIX 6 AA6 ALA A 839 ARG A 841 5 3 HELIX 7 AA7 PRO A 877 MET A 881 5 5 HELIX 8 AA8 ALA A 882 ARG A 889 1 8 HELIX 9 AA9 THR A 892 THR A 909 1 18 HELIX 10 AB1 PRO A 919 SER A 921 5 3 HELIX 11 AB2 GLU A 922 LYS A 929 1 8 HELIX 12 AB3 THR A 940 TRP A 951 1 12 HELIX 13 AB4 ASP A 954 ARG A 958 5 5 HELIX 14 AB5 LYS A 960 ARG A 973 1 14 HELIX 15 AB6 ASP A 974 LEU A 979 1 6 HELIX 16 AB7 ASN B 700 LEU B 704 5 5 HELIX 17 AB8 LYS B 708 THR B 710 5 3 HELIX 18 AB9 ASN B 756 VAL B 769 1 14 HELIX 19 AC1 CYS B 797 HIS B 805 1 9 HELIX 20 AC2 LYS B 806 ILE B 809 5 4 HELIX 21 AC3 GLY B 810 ARG B 831 1 22 HELIX 22 AC4 ALA B 839 ARG B 841 5 3 HELIX 23 AC5 PRO B 877 MET B 881 5 5 HELIX 24 AC6 ALA B 882 ARG B 889 1 8 HELIX 25 AC7 THR B 892 THR B 909 1 18 HELIX 26 AC8 PRO B 919 SER B 921 5 3 HELIX 27 AC9 GLU B 922 GLY B 930 1 9 HELIX 28 AD1 THR B 940 TRP B 951 1 12 HELIX 29 AD2 ASP B 954 ARG B 958 5 5 HELIX 30 AD3 LYS B 960 ARG B 973 1 14 HELIX 31 AD4 ASP B 974 LEU B 979 1 6 SHEET 1 AA1 6 ARG A 705 ILE A 706 0 SHEET 2 AA1 6 GLY A 779 LEU A 782 1 O ILE A 780 N ARG A 705 SHEET 3 AA1 6 VAL A 786 GLN A 791 -1 O ILE A 789 N GLY A 779 SHEET 4 AA1 6 ILE A 740 LEU A 747 -1 N LYS A 745 O LEU A 788 SHEET 5 AA1 6 GLY A 724 TRP A 731 -1 N THR A 725 O GLU A 746 SHEET 6 AA1 6 PHE A 712 GLY A 721 -1 N LEU A 718 O VAL A 726 SHEET 1 AA2 2 VAL A 843 THR A 847 0 SHEET 2 AA2 2 HIS A 850 ILE A 853 -1 O LYS A 852 N LEU A 844 SHEET 1 AA3 6 ARG B 705 ILE B 706 0 SHEET 2 AA3 6 GLY B 779 LEU B 782 1 O ILE B 780 N ARG B 705 SHEET 3 AA3 6 VAL B 786 GLN B 791 -1 O ILE B 789 N GLY B 779 SHEET 4 AA3 6 ILE B 740 LEU B 747 -1 N LYS B 745 O LEU B 788 SHEET 5 AA3 6 GLY B 724 TRP B 731 -1 N TRP B 731 O ILE B 740 SHEET 6 AA3 6 PHE B 712 SER B 720 -1 N GLY B 719 O VAL B 726 SHEET 1 AA4 2 VAL B 843 THR B 847 0 SHEET 2 AA4 2 HIS B 850 ILE B 853 -1 O LYS B 852 N LEU B 844 LINK SG CYS A 797 CBI N7Q A1101 1555 1555 1.84 LINK SG CYS B 797 CBI N7Q B1105 1555 1555 1.82 SITE 1 AC1 23 LEU A 718 GLY A 719 SER A 720 VAL A 726 SITE 2 AC1 23 ALA A 743 LYS A 745 CYS A 775 LEU A 788 SITE 3 AC1 23 MET A 790 GLN A 791 MET A 793 CYS A 797 SITE 4 AC1 23 ASP A 800 ARG A 841 LEU A 844 THR A 854 SITE 5 AC1 23 ASP A 855 PHE A 856 EDO A1102 HOH A1229 SITE 6 AC1 23 HOH A1255 HOH A1311 HOH A1325 SITE 1 AC2 7 LEU A 718 ASP A 800 N7Q A1101 EDO A1103 SITE 2 AC2 7 HOH A1228 HOH A1229 TYR B 727 SITE 1 AC3 5 ASP A 800 EDO A1102 HOH A1229 ILE B 715 SITE 2 AC3 5 TYR B 727 SITE 1 AC4 8 LYS A 846 THR A 847 HIS A 850 HOH A1211 SITE 2 AC4 8 ARG B 776 LEU B 778 GLN B 791 HOH B1233 SITE 1 AC5 10 LYS A 846 HIS A 850 LYS A 852 HOH A1201 SITE 2 AC5 10 HOH A1211 HOH A1215 HOH A1243 LYS B 846 SITE 3 AC5 10 HIS B 850 LYS B 852 SITE 1 AC6 8 ARG A 776 LEU A 778 GLN A 791 HOH A1235 SITE 2 AC6 8 LYS B 846 THR B 847 HIS B 850 HOH B1205 SITE 1 AC7 6 GLY B 721 ALA B 722 PHE B 723 GLY B 724 SITE 2 AC7 6 LYS B 745 HOH B1275 SITE 1 AC8 7 VAL A 717 LEU A 718 GLY B 724 THR B 725 SITE 2 AC8 7 TYR B 727 GLU B 746 ARG B 748 SITE 1 AC9 2 ARG B 803 HOH B1282 SITE 1 AD1 24 GLY B 719 SER B 720 VAL B 726 ALA B 743 SITE 2 AD1 24 LYS B 745 MET B 766 CYS B 775 LEU B 788 SITE 3 AD1 24 MET B 790 GLN B 791 MET B 793 GLY B 796 SITE 4 AD1 24 LEU B 798 LEU B 799 ASP B 800 TYR B 801 SITE 5 AD1 24 ARG B 841 VAL B 843 LEU B 844 THR B 854 SITE 6 AD1 24 ASP B 855 PHE B 856 HOH B1218 HOH B1262 CRYST1 76.400 82.600 89.900 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013089 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012107 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011123 0.00000