HEADER TRANSFERASE 14-NOV-19 6TFW TITLE CRYSTAL STRUCTURE OF EGFR T790M/V948R IN COMPLEX WITH COVALENT TITLE 2 PYRROLOPYRIMIDINE 18D COMPND MOL_ID: 1; COMPND 2 MOLECULE: EPIDERMAL GROWTH FACTOR RECEPTOR; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PROTO-ONCOGENE C-ERBB-1,RECEPTOR TYROSINE-PROTEIN KINASE COMPND 5 ERBB-1; COMPND 6 EC: 2.7.10.1; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: EGFR, ERBB, ERBB1, HER1; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108 KEYWDS HER2, EGFR, COVALENT INHIBITORS, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR J.NIGGENABER,M.P.MUELLER,D.RAUH REVDAT 3 24-JAN-24 6TFW 1 REMARK REVDAT 2 04-NOV-20 6TFW 1 JRNL REVDAT 1 30-SEP-20 6TFW 0 JRNL AUTH J.LATEGAHN,J.HARDICK,T.GRABE,J.NIGGENABER,K.JEYAKUMAR, JRNL AUTH 2 M.KEUL,H.L.TUMBRINK,C.BECKER,L.HODSON,T.KIRSCHNER, JRNL AUTH 3 P.KLOVEKORN,J.KETZER,M.BAUMANN,S.TERHEYDEN,A.UNGER, JRNL AUTH 4 J.WEISNER,M.P.MULLER,W.A.L.VAN OTTERLO,S.BAUER,D.RAUH JRNL TITL TARGETING HER2-INSYVMA WITH COVALENT INHIBITORS-A FOCUSED JRNL TITL 2 COMPOUND SCREENING AND STRUCTURE-BASED DESIGN APPROACH. JRNL REF J.MED.CHEM. V. 63 11725 2020 JRNL REFN ISSN 0022-2623 JRNL PMID 32931277 JRNL DOI 10.1021/ACS.JMEDCHEM.0C00870 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.16_3549 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.30 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 38452 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.224 REMARK 3 R VALUE (WORKING SET) : 0.223 REMARK 3 FREE R VALUE : 0.245 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1923 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.2900 - 4.8187 1.00 2782 147 0.2162 0.2410 REMARK 3 2 4.8187 - 3.8253 1.00 2662 140 0.1808 0.1857 REMARK 3 3 3.8253 - 3.3419 1.00 2638 139 0.2048 0.2192 REMARK 3 4 3.3419 - 3.0364 1.00 2602 137 0.2251 0.2703 REMARK 3 5 3.0364 - 2.8188 1.00 2615 138 0.2450 0.2501 REMARK 3 6 2.8188 - 2.6526 1.00 2598 136 0.2470 0.2601 REMARK 3 7 2.6526 - 2.5198 1.00 2601 136 0.2497 0.2997 REMARK 3 8 2.5198 - 2.4101 1.00 2597 137 0.2594 0.2774 REMARK 3 9 2.4101 - 2.3173 1.00 2563 135 0.2531 0.3316 REMARK 3 10 2.3173 - 2.2374 1.00 2579 136 0.2648 0.3196 REMARK 3 11 2.2374 - 2.1674 1.00 2593 136 0.2787 0.2961 REMARK 3 12 2.1674 - 2.1055 1.00 2558 135 0.2976 0.3208 REMARK 3 13 2.1055 - 2.0500 1.00 2575 136 0.3227 0.3829 REMARK 3 14 2.0500 - 2.0000 1.00 2566 135 0.3506 0.4016 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.290 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.290 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 58.52 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -31.4342 4.1731 -10.1873 REMARK 3 T TENSOR REMARK 3 T11: 0.3510 T22: 0.2818 REMARK 3 T33: 0.3072 T12: -0.0410 REMARK 3 T13: -0.0181 T23: -0.0350 REMARK 3 L TENSOR REMARK 3 L11: 2.2591 L22: 0.8623 REMARK 3 L33: 1.2588 L12: 0.1735 REMARK 3 L13: 0.2401 L23: 0.1340 REMARK 3 S TENSOR REMARK 3 S11: -0.0240 S12: 0.0449 S13: 0.0801 REMARK 3 S21: -0.0101 S22: 0.0861 S23: 0.0346 REMARK 3 S31: -0.0874 S32: 0.2433 S33: -0.0551 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6TFW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 14-NOV-19. REMARK 100 THE DEPOSITION ID IS D_1292104059. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-NOV-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9999 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38474 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 47.300 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.480 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.8400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.10 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.630 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5J9Z REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.19 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.29 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30 % PEG3350, 100 MM MGSO4, 4 % REMARK 280 ETHYLEN GLYCOLE 7.0 MG/ML EGFR T790M/V948R (IN 100 MM NACL, 25 REMARK 280 MM TRIS-HCL, 10 % GLYCEROL, 1 MM TCEP, PH 8.0) 1 UL RESERVOIR + REMARK 280 1 UL PROTEIN SOLUTION), VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 38.05000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 45.15000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.60000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 45.15000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 38.05000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 40.60000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 690 REMARK 465 SER A 691 REMARK 465 HIS A 692 REMARK 465 MET A 693 REMARK 465 ALA A 694 REMARK 465 SER A 695 REMARK 465 GLY A 696 REMARK 465 GLU A 697 REMARK 465 ALA A 698 REMARK 465 PRO A 699 REMARK 465 THR A 751 REMARK 465 SER A 752 REMARK 465 PRO A 753 REMARK 465 LEU A 861 REMARK 465 LEU A 862 REMARK 465 GLY A 863 REMARK 465 ALA A 864 REMARK 465 GLU A 865 REMARK 465 GLU A 866 REMARK 465 LYS A 867 REMARK 465 GLU A 868 REMARK 465 TYR A 869 REMARK 465 HIS A 870 REMARK 465 ALA A 871 REMARK 465 GLU A 872 REMARK 465 GLY A 873 REMARK 465 GLY A 874 REMARK 465 GLY A 983 REMARK 465 ASP A 984 REMARK 465 GLU A 985 REMARK 465 ARG A 986 REMARK 465 MET A 987 REMARK 465 HIS A 988 REMARK 465 LEU A 989 REMARK 465 PRO A 990 REMARK 465 SER A 991 REMARK 465 PRO A 992 REMARK 465 THR A 993 REMARK 465 ASP A 994 REMARK 465 SER A 995 REMARK 465 ASN A 996 REMARK 465 PHE A 997 REMARK 465 TYR A 998 REMARK 465 ARG A 999 REMARK 465 ALA A 1000 REMARK 465 LEU A 1001 REMARK 465 MET A 1002 REMARK 465 ASP A 1003 REMARK 465 GLU A 1004 REMARK 465 GLU A 1005 REMARK 465 ASP A 1006 REMARK 465 MET A 1007 REMARK 465 ASP A 1008 REMARK 465 ASP A 1009 REMARK 465 VAL A 1010 REMARK 465 VAL A 1011 REMARK 465 ASP A 1012 REMARK 465 ALA A 1013 REMARK 465 ASP A 1014 REMARK 465 GLU A 1015 REMARK 465 TYR A 1016 REMARK 465 LEU A 1017 REMARK 465 ILE A 1018 REMARK 465 PRO A 1019 REMARK 465 GLN A 1020 REMARK 465 GLN A 1021 REMARK 465 GLY A 1022 REMARK 465 GLY B 690 REMARK 465 SER B 691 REMARK 465 HIS B 692 REMARK 465 MET B 693 REMARK 465 ALA B 694 REMARK 465 SER B 695 REMARK 465 GLY B 696 REMARK 465 GLU B 697 REMARK 465 ALA B 698 REMARK 465 PRO B 699 REMARK 465 SER B 752 REMARK 465 PRO B 753 REMARK 465 LYS B 754 REMARK 465 LEU B 858 REMARK 465 ALA B 859 REMARK 465 LYS B 860 REMARK 465 LEU B 861 REMARK 465 LEU B 862 REMARK 465 GLY B 863 REMARK 465 ALA B 864 REMARK 465 GLU B 865 REMARK 465 GLU B 866 REMARK 465 LYS B 867 REMARK 465 GLU B 868 REMARK 465 TYR B 869 REMARK 465 HIS B 870 REMARK 465 ALA B 871 REMARK 465 GLU B 872 REMARK 465 GLY B 873 REMARK 465 GLY B 874 REMARK 465 LYS B 875 REMARK 465 GLU B 985 REMARK 465 ARG B 986 REMARK 465 MET B 987 REMARK 465 HIS B 988 REMARK 465 LEU B 989 REMARK 465 PRO B 990 REMARK 465 SER B 991 REMARK 465 PRO B 992 REMARK 465 THR B 993 REMARK 465 ASP B 994 REMARK 465 SER B 995 REMARK 465 ASN B 996 REMARK 465 PHE B 997 REMARK 465 TYR B 998 REMARK 465 ARG B 999 REMARK 465 ALA B 1000 REMARK 465 LEU B 1001 REMARK 465 MET B 1002 REMARK 465 ASP B 1003 REMARK 465 GLU B 1004 REMARK 465 GLU B 1005 REMARK 465 ASP B 1006 REMARK 465 MET B 1007 REMARK 465 ASP B 1008 REMARK 465 ASP B 1009 REMARK 465 VAL B 1010 REMARK 465 VAL B 1011 REMARK 465 ASP B 1012 REMARK 465 ALA B 1013 REMARK 465 ASP B 1014 REMARK 465 GLU B 1015 REMARK 465 TYR B 1016 REMARK 465 LEU B 1017 REMARK 465 ILE B 1018 REMARK 465 PRO B 1019 REMARK 465 GLN B 1020 REMARK 465 GLN B 1021 REMARK 465 GLY B 1022 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 701 CG CD OE1 NE2 REMARK 470 LYS A 713 CG CD CE NZ REMARK 470 ILE A 715 CG1 CG2 CD1 REMARK 470 LYS A 716 CG CD CE NZ REMARK 470 GLU A 734 CG CD OE1 OE2 REMARK 470 LYS A 737 CG CD CE NZ REMARK 470 LYS A 739 CG CD CE NZ REMARK 470 LYS A 757 CG CD CE NZ REMARK 470 GLU A 758 CG CD OE1 OE2 REMARK 470 ASP A 807 CG OD1 OD2 REMARK 470 ARG A 832 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 860 CG CD CE NZ REMARK 470 LYS A 875 CG CD CE NZ REMARK 470 VAL A 876 CG1 CG2 REMARK 470 ARG A 889 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 929 CG CD CE NZ REMARK 470 MET A 945 CG SD CE REMARK 470 ASP A 956 CG OD1 OD2 REMARK 470 LYS A 960 CG CD CE NZ REMARK 470 ARG A 962 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 982 CG CD OE1 NE2 REMARK 470 GLN B 701 CG CD OE1 NE2 REMARK 470 GLU B 709 CG CD OE1 OE2 REMARK 470 LYS B 713 CG CD CE NZ REMARK 470 LYS B 716 CG CD CE NZ REMARK 470 PHE B 723 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS B 728 CG CD CE NZ REMARK 470 GLU B 734 CG CD OE1 OE2 REMARK 470 LYS B 737 CG CD CE NZ REMARK 470 VAL B 738 CG1 CG2 REMARK 470 LYS B 739 CG CD CE NZ REMARK 470 ARG B 748 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 749 CG CD OE1 OE2 REMARK 470 LYS B 757 CG CD CE NZ REMARK 470 GLU B 758 CG CD OE1 OE2 REMARK 470 GLN B 791 CG CD OE1 NE2 REMARK 470 ASN B 808 CG OD1 ND2 REMARK 470 ARG B 832 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 849 CG CD OE1 NE2 REMARK 470 ARG B 889 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 929 CG CD CE NZ REMARK 470 ILE B 941 CG1 CG2 CD1 REMARK 470 LYS B 960 CG CD CE NZ REMARK 470 GLN B 982 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 736 -5.99 -140.86 REMARK 500 THR A 783 -138.02 -123.84 REMARK 500 ASP A 837 25.59 -155.46 REMARK 500 PRO A 848 -19.52 -49.84 REMARK 500 THR B 783 -117.17 -124.46 REMARK 500 ARG B 836 -11.99 82.60 REMARK 500 ASP B 837 50.48 -152.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1104 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 842 OD1 REMARK 620 2 ASP A 855 OD2 66.5 REMARK 620 3 HOH A1213 O 69.3 81.6 REMARK 620 4 HOH A1221 O 75.9 74.7 143.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B1106 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN B 842 OD1 REMARK 620 2 ASP B 855 OD2 77.7 REMARK 620 3 HOH B1201 O 148.8 83.7 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue N7W A 1101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 1102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 1103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 1104 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 1105 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 1101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 1102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 1103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 1104 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 1106 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide N7W B 1105 and CYS B REMARK 800 797 DBREF 6TFW A 695 1022 UNP P00533 EGFR_HUMAN 695 1022 DBREF 6TFW B 695 1022 UNP P00533 EGFR_HUMAN 695 1022 SEQADV 6TFW GLY A 690 UNP P00533 EXPRESSION TAG SEQADV 6TFW SER A 691 UNP P00533 EXPRESSION TAG SEQADV 6TFW HIS A 692 UNP P00533 EXPRESSION TAG SEQADV 6TFW MET A 693 UNP P00533 EXPRESSION TAG SEQADV 6TFW ALA A 694 UNP P00533 EXPRESSION TAG SEQADV 6TFW MET A 790 UNP P00533 THR 790 ENGINEERED MUTATION SEQADV 6TFW ARG A 948 UNP P00533 VAL 948 ENGINEERED MUTATION SEQADV 6TFW GLY B 690 UNP P00533 EXPRESSION TAG SEQADV 6TFW SER B 691 UNP P00533 EXPRESSION TAG SEQADV 6TFW HIS B 692 UNP P00533 EXPRESSION TAG SEQADV 6TFW MET B 693 UNP P00533 EXPRESSION TAG SEQADV 6TFW ALA B 694 UNP P00533 EXPRESSION TAG SEQADV 6TFW MET B 790 UNP P00533 THR 790 ENGINEERED MUTATION SEQADV 6TFW ARG B 948 UNP P00533 VAL 948 ENGINEERED MUTATION SEQRES 1 A 333 GLY SER HIS MET ALA SER GLY GLU ALA PRO ASN GLN ALA SEQRES 2 A 333 LEU LEU ARG ILE LEU LYS GLU THR GLU PHE LYS LYS ILE SEQRES 3 A 333 LYS VAL LEU GLY SER GLY ALA PHE GLY THR VAL TYR LYS SEQRES 4 A 333 GLY LEU TRP ILE PRO GLU GLY GLU LYS VAL LYS ILE PRO SEQRES 5 A 333 VAL ALA ILE LYS GLU LEU ARG GLU ALA THR SER PRO LYS SEQRES 6 A 333 ALA ASN LYS GLU ILE LEU ASP GLU ALA TYR VAL MET ALA SEQRES 7 A 333 SER VAL ASP ASN PRO HIS VAL CYS ARG LEU LEU GLY ILE SEQRES 8 A 333 CYS LEU THR SER THR VAL GLN LEU ILE MET GLN LEU MET SEQRES 9 A 333 PRO PHE GLY CYS LEU LEU ASP TYR VAL ARG GLU HIS LYS SEQRES 10 A 333 ASP ASN ILE GLY SER GLN TYR LEU LEU ASN TRP CYS VAL SEQRES 11 A 333 GLN ILE ALA LYS GLY MET ASN TYR LEU GLU ASP ARG ARG SEQRES 12 A 333 LEU VAL HIS ARG ASP LEU ALA ALA ARG ASN VAL LEU VAL SEQRES 13 A 333 LYS THR PRO GLN HIS VAL LYS ILE THR ASP PHE GLY LEU SEQRES 14 A 333 ALA LYS LEU LEU GLY ALA GLU GLU LYS GLU TYR HIS ALA SEQRES 15 A 333 GLU GLY GLY LYS VAL PRO ILE LYS TRP MET ALA LEU GLU SEQRES 16 A 333 SER ILE LEU HIS ARG ILE TYR THR HIS GLN SER ASP VAL SEQRES 17 A 333 TRP SER TYR GLY VAL THR VAL TRP GLU LEU MET THR PHE SEQRES 18 A 333 GLY SER LYS PRO TYR ASP GLY ILE PRO ALA SER GLU ILE SEQRES 19 A 333 SER SER ILE LEU GLU LYS GLY GLU ARG LEU PRO GLN PRO SEQRES 20 A 333 PRO ILE CYS THR ILE ASP VAL TYR MET ILE MET ARG LYS SEQRES 21 A 333 CYS TRP MET ILE ASP ALA ASP SER ARG PRO LYS PHE ARG SEQRES 22 A 333 GLU LEU ILE ILE GLU PHE SER LYS MET ALA ARG ASP PRO SEQRES 23 A 333 GLN ARG TYR LEU VAL ILE GLN GLY ASP GLU ARG MET HIS SEQRES 24 A 333 LEU PRO SER PRO THR ASP SER ASN PHE TYR ARG ALA LEU SEQRES 25 A 333 MET ASP GLU GLU ASP MET ASP ASP VAL VAL ASP ALA ASP SEQRES 26 A 333 GLU TYR LEU ILE PRO GLN GLN GLY SEQRES 1 B 333 GLY SER HIS MET ALA SER GLY GLU ALA PRO ASN GLN ALA SEQRES 2 B 333 LEU LEU ARG ILE LEU LYS GLU THR GLU PHE LYS LYS ILE SEQRES 3 B 333 LYS VAL LEU GLY SER GLY ALA PHE GLY THR VAL TYR LYS SEQRES 4 B 333 GLY LEU TRP ILE PRO GLU GLY GLU LYS VAL LYS ILE PRO SEQRES 5 B 333 VAL ALA ILE LYS GLU LEU ARG GLU ALA THR SER PRO LYS SEQRES 6 B 333 ALA ASN LYS GLU ILE LEU ASP GLU ALA TYR VAL MET ALA SEQRES 7 B 333 SER VAL ASP ASN PRO HIS VAL CYS ARG LEU LEU GLY ILE SEQRES 8 B 333 CYS LEU THR SER THR VAL GLN LEU ILE MET GLN LEU MET SEQRES 9 B 333 PRO PHE GLY CYS LEU LEU ASP TYR VAL ARG GLU HIS LYS SEQRES 10 B 333 ASP ASN ILE GLY SER GLN TYR LEU LEU ASN TRP CYS VAL SEQRES 11 B 333 GLN ILE ALA LYS GLY MET ASN TYR LEU GLU ASP ARG ARG SEQRES 12 B 333 LEU VAL HIS ARG ASP LEU ALA ALA ARG ASN VAL LEU VAL SEQRES 13 B 333 LYS THR PRO GLN HIS VAL LYS ILE THR ASP PHE GLY LEU SEQRES 14 B 333 ALA LYS LEU LEU GLY ALA GLU GLU LYS GLU TYR HIS ALA SEQRES 15 B 333 GLU GLY GLY LYS VAL PRO ILE LYS TRP MET ALA LEU GLU SEQRES 16 B 333 SER ILE LEU HIS ARG ILE TYR THR HIS GLN SER ASP VAL SEQRES 17 B 333 TRP SER TYR GLY VAL THR VAL TRP GLU LEU MET THR PHE SEQRES 18 B 333 GLY SER LYS PRO TYR ASP GLY ILE PRO ALA SER GLU ILE SEQRES 19 B 333 SER SER ILE LEU GLU LYS GLY GLU ARG LEU PRO GLN PRO SEQRES 20 B 333 PRO ILE CYS THR ILE ASP VAL TYR MET ILE MET ARG LYS SEQRES 21 B 333 CYS TRP MET ILE ASP ALA ASP SER ARG PRO LYS PHE ARG SEQRES 22 B 333 GLU LEU ILE ILE GLU PHE SER LYS MET ALA ARG ASP PRO SEQRES 23 B 333 GLN ARG TYR LEU VAL ILE GLN GLY ASP GLU ARG MET HIS SEQRES 24 B 333 LEU PRO SER PRO THR ASP SER ASN PHE TYR ARG ALA LEU SEQRES 25 B 333 MET ASP GLU GLU ASP MET ASP ASP VAL VAL ASP ALA ASP SEQRES 26 B 333 GLU TYR LEU ILE PRO GLN GLN GLY HET N7W A1101 42 HET SO4 A1102 5 HET SO4 A1103 5 HET MG A1104 1 HET CL A1105 1 HET SO4 B1101 5 HET SO4 B1102 5 HET SO4 B1103 5 HET CL B1104 1 HET N7W B1105 42 HET MG B1106 1 HETNAM N7W ~{N}-[5-[4-[[3-CHLORANYL-4-(PYRIDIN-2-YLMETHOXY) HETNAM 2 N7W PHENYL]AMINO]-7~{H}-PYRROLO[2,3-D]PYRIMIDIN-5-YL]-2- HETNAM 3 N7W [2-(DIMETHYLAMINO)ETHOXY]PHENYL]PROPANAMIDE HETNAM SO4 SULFATE ION HETNAM MG MAGNESIUM ION HETNAM CL CHLORIDE ION FORMUL 3 N7W 2(C31 H32 CL N7 O3) FORMUL 4 SO4 5(O4 S 2-) FORMUL 6 MG 2(MG 2+) FORMUL 7 CL 2(CL 1-) FORMUL 14 HOH *55(H2 O) HELIX 1 AA1 ASN A 700 LEU A 704 5 5 HELIX 2 AA2 LYS A 708 THR A 710 5 3 HELIX 3 AA3 ALA A 755 VAL A 769 1 15 HELIX 4 AA4 CYS A 797 HIS A 805 1 9 HELIX 5 AA5 LYS A 806 ILE A 809 5 4 HELIX 6 AA6 GLY A 810 ARG A 831 1 22 HELIX 7 AA7 ALA A 839 ARG A 841 5 3 HELIX 8 AA8 PRO A 877 MET A 881 5 5 HELIX 9 AA9 ALA A 882 ARG A 889 1 8 HELIX 10 AB1 THR A 892 THR A 909 1 18 HELIX 11 AB2 PRO A 919 SER A 921 5 3 HELIX 12 AB3 GLU A 922 LYS A 929 1 8 HELIX 13 AB4 THR A 940 CYS A 950 1 11 HELIX 14 AB5 ASP A 954 ARG A 958 5 5 HELIX 15 AB6 LYS A 960 ASP A 974 1 15 HELIX 16 AB7 ASP A 974 LEU A 979 1 6 HELIX 17 AB8 ASN B 700 LEU B 704 5 5 HELIX 18 AB9 LYS B 708 THR B 710 5 3 HELIX 19 AC1 ASN B 756 SER B 768 1 13 HELIX 20 AC2 CYS B 797 HIS B 805 1 9 HELIX 21 AC3 LYS B 806 ILE B 809 5 4 HELIX 22 AC4 GLY B 810 ARG B 831 1 22 HELIX 23 AC5 ALA B 839 ARG B 841 5 3 HELIX 24 AC6 PRO B 877 MET B 881 5 5 HELIX 25 AC7 ALA B 882 ARG B 889 1 8 HELIX 26 AC8 THR B 892 THR B 909 1 18 HELIX 27 AC9 PRO B 919 GLY B 930 1 12 HELIX 28 AD1 THR B 940 TRP B 951 1 12 HELIX 29 AD2 ASP B 954 ARG B 958 5 5 HELIX 30 AD3 LYS B 960 ASP B 974 1 15 HELIX 31 AD4 ASP B 974 LEU B 979 1 6 SHEET 1 AA1 6 ARG A 705 ILE A 706 0 SHEET 2 AA1 6 GLY A 779 LEU A 782 1 O ILE A 780 N ARG A 705 SHEET 3 AA1 6 VAL A 786 GLN A 791 -1 O ILE A 789 N GLY A 779 SHEET 4 AA1 6 ILE A 740 LEU A 747 -1 N ALA A 743 O MET A 790 SHEET 5 AA1 6 GLY A 724 TRP A 731 -1 N TRP A 731 O ILE A 740 SHEET 6 AA1 6 PHE A 712 SER A 720 -1 N LYS A 716 O LYS A 728 SHEET 1 AA2 2 VAL A 843 THR A 847 0 SHEET 2 AA2 2 HIS A 850 ILE A 853 -1 O HIS A 850 N THR A 847 SHEET 1 AA3 6 ARG B 705 ILE B 706 0 SHEET 2 AA3 6 GLY B 779 LEU B 782 1 O ILE B 780 N ARG B 705 SHEET 3 AA3 6 VAL B 786 GLN B 791 -1 O ILE B 789 N GLY B 779 SHEET 4 AA3 6 ILE B 740 LEU B 747 -1 N LEU B 747 O VAL B 786 SHEET 5 AA3 6 GLY B 724 TRP B 731 -1 N TRP B 731 O ILE B 740 SHEET 6 AA3 6 PHE B 712 SER B 720 -1 N LYS B 716 O LYS B 728 SHEET 1 AA4 2 VAL B 843 THR B 847 0 SHEET 2 AA4 2 HIS B 850 ILE B 853 -1 O LYS B 852 N LEU B 844 LINK SG CYS A 797 CBJ N7W A1101 1555 1555 1.82 LINK SG CYS B 797 CBJ N7W B1105 1555 1555 1.82 LINK OD1 ASN A 842 MG MG A1104 1555 1555 2.77 LINK OD2 ASP A 855 MG MG A1104 1555 1555 2.34 LINK MG MG A1104 O HOH A1213 1555 1555 2.08 LINK MG MG A1104 O HOH A1221 1555 1555 2.64 LINK OD1 ASN B 842 MG MG B1106 1555 1555 2.47 LINK OD2 ASP B 855 MG MG B1106 1555 1555 2.02 LINK MG MG B1106 O HOH B1201 1555 1555 2.33 SITE 1 AC1 16 SER A 720 VAL A 726 ALA A 743 LYS A 745 SITE 2 AC1 16 CYS A 775 LEU A 788 MET A 790 GLN A 791 SITE 3 AC1 16 MET A 793 CYS A 797 ASP A 800 ARG A 841 SITE 4 AC1 16 LEU A 844 THR A 854 ASP A 855 PHE A 856 SITE 1 AC2 4 LYS A 846 THR A 847 HIS A 850 ARG B 776 SITE 1 AC3 8 GLN A 791 LYS A 846 HIS A 850 LYS A 852 SITE 2 AC3 8 LYS B 846 HIS B 850 LYS B 852 HOH B1202 SITE 1 AC4 5 ASN A 842 ASP A 855 CL A1105 HOH A1213 SITE 2 AC4 5 HOH A1221 SITE 1 AC5 1 MG A1104 SITE 1 AC6 7 ARG A 776 LEU A 778 HOH A1208 LYS B 846 SITE 2 AC6 7 THR B 847 HIS B 850 HOH B1202 SITE 1 AC7 3 LEU B 799 ARG B 803 LYS B 913 SITE 1 AC8 7 GLY B 721 ALA B 722 PHE B 723 GLY B 724 SITE 2 AC8 7 LYS B 745 MG B1106 HOH B1201 SITE 1 AC9 1 N7W B1105 SITE 1 AD1 4 ASN B 842 ASP B 855 SO4 B1103 HOH B1201 SITE 1 AD2 23 SER B 720 VAL B 726 ALA B 743 LYS B 745 SITE 2 AD2 23 MET B 766 CYS B 775 LEU B 788 MET B 790 SITE 3 AD2 23 GLN B 791 LEU B 792 MET B 793 GLY B 796 SITE 4 AD2 23 LEU B 798 LEU B 799 ASP B 800 TYR B 801 SITE 5 AD2 23 ARG B 841 VAL B 843 LEU B 844 THR B 854 SITE 6 AD2 23 ASP B 855 PHE B 856 CL B1104 CRYST1 76.100 81.200 90.300 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013141 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012315 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011074 0.00000