HEADER FLAVOPROTEIN 19-NOV-19 6TH8 TITLE RECONSTRUCTING THE ORIGINS OF THE HEMD-LIKE FOLD COMPND MOL_ID: 1; COMPND 2 MOLECULE: CU3SD; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 274; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PROTEIN DESIGN, HEMD-LIKE FOLD, FLAVODOXIN-LIKE FOLD, FLAVOPROTEIN EXPDTA SOLUTION NMR NUMMDL 21 AUTHOR M.COLES,S.TOLEDO-PATINO,M.CHAUBEY,B.HOCKER REVDAT 3 14-JUN-23 6TH8 1 REMARK REVDAT 2 11-DEC-19 6TH8 1 JRNL REVDAT 1 27-NOV-19 6TH8 0 JRNL AUTH S.TOLEDO-PATINO,M.CHAUBEY,M.COLES,B.HOCKER JRNL TITL RECONSTRUCTING THE REMOTE ORIGINS OF A FOLD SINGLETON FROM A JRNL TITL 2 FLAVODOXIN-LIKE ANCESTOR. JRNL REF BIOCHEMISTRY V. 58 4790 2019 JRNL REFN ISSN 0006-2960 JRNL PMID 31724394 JRNL DOI 10.1021/ACS.BIOCHEM.9B00900 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NULL REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6TH8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 19-NOV-19. REMARK 100 THE DEPOSITION ID IS D_1292105435. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 288 REMARK 210 PH : 8 REMARK 210 IONIC STRENGTH : 1 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 29 MM [U-13C; U-15N] CU3SD, 90% REMARK 210 H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D HNCO; 3D HNCA; 3D H(CCO)NH; REMARK 210 3D HCCH-TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE III REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN, SPARKY, X-PLOR NIH REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 21 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7680 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ALA A 68 -143.74 59.07 REMARK 500 2 ALA A 68 -144.19 59.51 REMARK 500 3 LEU A 33 -9.35 -59.38 REMARK 500 3 ALA A 68 -144.43 59.51 REMARK 500 4 ALA A 68 -144.16 59.72 REMARK 500 5 ALA A 68 -144.63 59.37 REMARK 500 6 LEU A 33 -9.31 -59.90 REMARK 500 6 ALA A 68 -142.53 58.96 REMARK 500 7 ALA A 68 -143.85 59.14 REMARK 500 8 PRO A 3 151.51 -49.98 REMARK 500 8 ALA A 68 -143.56 59.45 REMARK 500 9 ALA A 68 -143.93 59.20 REMARK 500 9 HIS A 120 -61.39 -160.03 REMARK 500 10 ALA A 68 -143.72 59.11 REMARK 500 10 HIS A 120 -57.96 -143.05 REMARK 500 11 ALA A 68 -143.30 59.16 REMARK 500 12 PRO A 3 152.31 -49.87 REMARK 500 12 ALA A 68 -144.09 59.28 REMARK 500 13 ALA A 68 -143.99 59.40 REMARK 500 14 ALA A 68 -143.15 58.83 REMARK 500 15 ALA A 68 -143.54 59.21 REMARK 500 16 ALA A 68 -143.15 59.13 REMARK 500 17 ALA A 68 -142.81 59.09 REMARK 500 18 ALA A 68 -142.18 58.88 REMARK 500 19 ALA A 68 -142.89 59.02 REMARK 500 20 ALA A 68 -142.79 58.95 REMARK 500 21 ALA A 68 -143.25 59.43 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 34452 RELATED DB: BMRB REMARK 900 RECONSTRUCTING THE ORIGINS OF THE HEMD-LIKE FOLD DBREF 6TH8 A 1 125 PDB 6TH8 6TH8 1 125 SEQRES 1 A 125 MET ASP PRO LYS VAL LEU ILE MET ARG GLY GLU GLY GLY SEQRES 2 A 125 ARG GLU PHE LEU ALA GLU ARG LEU ARG GLY GLN GLY VAL SEQRES 3 A 125 GLN VAL ASP TYR LEU PRO LEU ASP TYR PRO ALA GLY GLU SEQRES 4 A 125 LEU LEU ALA ARG VAL ARG ALA GLU ARG LEU ASN GLY LEU SEQRES 5 A 125 VAL VAL SER SER GLY GLN GLY LEU GLN ASN LEU TYR GLN SEQRES 6 A 125 LEU ALA ALA ALA ASP TRP PRO GLU ILE GLY ARG LEU PRO SEQRES 7 A 125 LEU PHE VAL PRO SER PRO ARG VAL ALA GLU MET ALA ARG SEQRES 8 A 125 GLU LEU GLY ALA GLN ARG VAL ILE ASP CYS ARG GLY ALA SEQRES 9 A 125 SER ALA PRO ALA LEU LEU ALA ALA LEU THR SER ALA ALA SEQRES 10 A 125 LEU GLU HIS HIS HIS HIS HIS HIS HELIX 1 AA1 GLY A 13 GLN A 24 1 12 HELIX 2 AA2 GLY A 38 ARG A 48 1 11 HELIX 3 AA3 SER A 56 ALA A 68 1 13 HELIX 4 AA4 ASP A 70 GLY A 75 1 6 HELIX 5 AA5 SER A 83 GLY A 94 1 12 HELIX 6 AA6 SER A 105 HIS A 124 1 20 SHEET 1 AA1 5 GLN A 27 LEU A 31 0 SHEET 2 AA1 5 LYS A 4 MET A 8 1 N ILE A 7 O LEU A 31 SHEET 3 AA1 5 GLY A 51 VAL A 53 1 O VAL A 53 N LEU A 6 SHEET 4 AA1 5 LEU A 79 VAL A 81 1 O PHE A 80 N LEU A 52 SHEET 5 AA1 5 VAL A 98 ASP A 100 1 O ILE A 99 N LEU A 79 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1