HEADER TRANSFERASE 20-NOV-19 6THO TITLE ACYLINTERMEDIATE OF GLUTATHIONE AND THE MATURE PRIMITIVE PHYTOCHELATIN TITLE 2 SYNTHASE ALR0975 FROM NOSTOC PCC 7120 AT ATOMIC RESOLUTION. COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALR0975 PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PRIMITIVE PHYTOCHELATIN SYNTHASE; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NOSTOC SP. PCC 7120; SOURCE 3 ORGANISM_TAXID: 103690; SOURCE 4 GENE: ALR0975, ALR0975; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: P10$ KEYWDS GLUTATHIONE, PHYTOCHELATIN, DETOXIFICATION, CHELATING HEAVY ATOMS, KEYWDS 2 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR C.G.FEILER,W.BLANKENFELDT REVDAT 3 24-JAN-24 6THO 1 REMARK REVDAT 2 15-JUN-22 6THO 1 JRNL REVDAT 1 02-DEC-20 6THO 0 JRNL AUTH F.J.GISDON,C.G.FEILER,O.KEMPF,J.M.FOERSTER,J.HAISS, JRNL AUTH 2 W.BLANKENFELDT,G.M.ULLMANN,E.BOMBARDA JRNL TITL STRUCTURAL AND BIOPHYSICAL ANALYSIS OF THE JRNL TITL 2 PHYTOCHELATIN-SYNTHASE-LIKE ENZYME FROM NOSTOC SP. SHOWS JRNL TITL 3 THAT ITS PROTEASE ACTIVITY IS SENSITIVE TO THE REDOX STATE JRNL TITL 4 OF THE SUBSTRATE. JRNL REF ACS CHEM.BIOL. V. 17 883 2022 JRNL REFN ESSN 1554-8937 JRNL PMID 35377603 JRNL DOI 10.1021/ACSCHEMBIO.1C00941 REMARK 2 REMARK 2 RESOLUTION. 1.09 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.09 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.21 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 164587 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.120 REMARK 3 R VALUE (WORKING SET) : 0.118 REMARK 3 FREE R VALUE : 0.148 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 8269 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.2100 - 3.3900 0.97 5495 314 0.1217 0.1506 REMARK 3 2 3.3900 - 2.6900 0.96 5248 266 0.1122 0.1631 REMARK 3 3 2.6900 - 2.3500 0.96 5158 276 0.1102 0.1356 REMARK 3 4 2.3500 - 2.1300 0.96 5131 281 0.1049 0.1247 REMARK 3 5 2.1300 - 1.9800 0.96 5124 259 0.1056 0.1372 REMARK 3 6 1.9800 - 1.8600 0.97 5156 280 0.1059 0.1355 REMARK 3 7 1.8600 - 1.7700 0.97 5133 276 0.1053 0.1251 REMARK 3 8 1.7700 - 1.6900 0.98 5185 279 0.1062 0.1295 REMARK 3 9 1.6900 - 1.6300 0.98 5232 270 0.1060 0.1262 REMARK 3 10 1.6300 - 1.5700 0.99 5167 287 0.1069 0.1433 REMARK 3 11 1.5700 - 1.5200 0.98 5203 263 0.1063 0.1441 REMARK 3 12 1.5200 - 1.4800 0.99 5239 281 0.1070 0.1477 REMARK 3 13 1.4800 - 1.4400 0.99 5229 293 0.1107 0.1425 REMARK 3 14 1.4400 - 1.4100 0.99 5198 270 0.1137 0.1433 REMARK 3 15 1.4100 - 1.3700 0.99 5206 293 0.1138 0.1547 REMARK 3 16 1.3700 - 1.3400 0.99 5203 282 0.1171 0.1431 REMARK 3 17 1.3400 - 1.3200 0.99 5232 263 0.1220 0.1508 REMARK 3 18 1.3200 - 1.2900 1.00 5239 264 0.1230 0.1614 REMARK 3 19 1.2900 - 1.2700 0.99 5176 293 0.1277 0.1628 REMARK 3 20 1.2700 - 1.2500 1.00 5267 257 0.1289 0.1544 REMARK 3 21 1.2500 - 1.2300 1.00 5227 253 0.1331 0.1660 REMARK 3 22 1.2300 - 1.2100 1.00 5184 300 0.1385 0.1796 REMARK 3 23 1.2100 - 1.1900 1.00 5225 288 0.1387 0.1680 REMARK 3 24 1.1900 - 1.1700 0.99 5193 263 0.1410 0.1622 REMARK 3 25 1.1700 - 1.1600 1.00 5259 257 0.1451 0.1745 REMARK 3 26 1.1600 - 1.1400 1.00 5182 278 0.1538 0.1670 REMARK 3 27 1.1400 - 1.1300 1.00 5193 285 0.1665 0.1923 REMARK 3 28 1.1300 - 1.1200 0.99 5206 262 0.1748 0.2050 REMARK 3 29 1.1200 - 1.1000 0.99 5221 253 0.1887 0.2164 REMARK 3 30 1.1000 - 1.0900 0.99 5207 283 0.1999 0.2048 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.079 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 12.446 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 8.96 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.98 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 4365 REMARK 3 ANGLE : 1.042 6011 REMARK 3 CHIRALITY : 0.081 664 REMARK 3 PLANARITY : 0.007 798 REMARK 3 DIHEDRAL : 29.223 664 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6THO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 21-NOV-19. REMARK 100 THE DEPOSITION ID IS D_1292105467. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-JUL-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5-6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.918409 REMARK 200 MONOCHROMATOR : SI111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 164591 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.090 REMARK 200 RESOLUTION RANGE LOW (A) : 29.210 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.05585 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 12.0600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.09 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.13 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.3 REMARK 200 DATA REDUNDANCY IN SHELL : 3.40 REMARK 200 R MERGE FOR SHELL (I) : 0.42720 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.720 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6TH5 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.08 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.99 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 16.5% PEG 8000, 0.1M MES PH 5.5, 0.18 REMARK 280 M CAAC, 5 MM GLUTATHIONE CRYOPROTECTANT 20% GLYCEROL, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 24.64150 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 69.73500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 28.97800 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 69.73500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.64150 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 28.97800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4950 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18010 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -42.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 218 REMARK 465 ASP A 219 REMARK 465 GLY B -2 REMARK 465 PRO B -1 REMARK 465 ASP B 219 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR A 217 OG1 CG2 REMARK 470 GLN B 218 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HE22 GLN B 44 O HOH B 1103 1.44 REMARK 500 HE22 GLN A 2 O HOH A 1110 1.47 REMARK 500 HH TYR B 72 O HOH B 1105 1.54 REMARK 500 HG SER B 70 O HOH B 1102 1.58 REMARK 500 HZ1 LYS B 216 O HOH B 1121 1.58 REMARK 500 O GLU A 127 O HOH A 1101 1.65 REMARK 500 O HOH B 1137 O HOH B 1176 1.83 REMARK 500 O HOH A 1138 O HOH B 1222 1.97 REMARK 500 O HOH A 1424 O HOH A 1439 2.04 REMARK 500 O HOH B 1369 O HOH B 1402 2.04 REMARK 500 OE1 GLU A 17 O HOH A 1104 2.07 REMARK 500 OG SER B 70 O HOH B 1102 2.08 REMARK 500 OD1 ASN A 14 O HOH A 1105 2.10 REMARK 500 O HOH A 1321 O HOH A 1362 2.15 REMARK 500 NE2 GLN B 44 O HOH B 1103 2.15 REMARK 500 NH1 ARG A 157 O HOH A 1106 2.15 REMARK 500 OE1 GLN A 170 O HOH A 1107 2.16 REMARK 500 NE2 GLN B 206 O HOH B 1104 2.16 REMARK 500 O HOH A 1195 O HOH A 1422 2.17 REMARK 500 NZ LYS A 151 O HOH A 1109 2.18 REMARK 500 CD GLN A 98 OE8 GDS A 1001 2.18 REMARK 500 NE2 GLN A 2 O HOH A 1110 2.19 REMARK 500 O HOH B 1116 O HOH B 1284 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 1322 O HOH B 1231 3455 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 14 34.40 -81.04 REMARK 500 ARG A 28 16.77 -146.02 REMARK 500 THR A 124 -157.81 -145.64 REMARK 500 ARG A 157 -51.49 -154.93 REMARK 500 ARG A 157 -51.33 -154.99 REMARK 500 ASN A 199 49.35 -84.96 REMARK 500 ARG A 209 -166.06 -76.66 REMARK 500 GLN B 2 57.65 -98.46 REMARK 500 ASN B 14 42.10 -85.72 REMARK 500 ARG B 28 13.89 -145.63 REMARK 500 PHE B 81 32.13 -92.42 REMARK 500 SER B 82 33.64 -81.75 REMARK 500 SER B 82 32.44 -96.39 REMARK 500 ARG B 157 -56.54 -158.07 REMARK 500 ARG B 157 -52.65 -159.68 REMARK 500 ARG B 209 -164.72 -76.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1458 DISTANCE = 5.88 ANGSTROMS REMARK 525 HOH A1459 DISTANCE = 6.19 ANGSTROMS REMARK 525 HOH A1460 DISTANCE = 6.39 ANGSTROMS REMARK 525 HOH A1461 DISTANCE = 8.09 ANGSTROMS REMARK 525 HOH B1443 DISTANCE = 6.00 ANGSTROMS REMARK 525 HOH B1444 DISTANCE = 6.00 ANGSTROMS REMARK 525 HOH B1445 DISTANCE = 6.07 ANGSTROMS REMARK 525 HOH B1446 DISTANCE = 6.19 ANGSTROMS REMARK 525 HOH B1447 DISTANCE = 6.31 ANGSTROMS REMARK 525 HOH B1448 DISTANCE = 6.75 ANGSTROMS REMARK 525 HOH B1449 DISTANCE = 6.85 ANGSTROMS REMARK 525 HOH B1450 DISTANCE = 6.93 ANGSTROMS REMARK 525 HOH B1451 DISTANCE = 6.97 ANGSTROMS REMARK 525 HOH B1452 DISTANCE = 7.25 ANGSTROMS REMARK 525 HOH B1453 DISTANCE = 8.39 ANGSTROMS REMARK 525 HOH B1454 DISTANCE = 8.57 ANGSTROMS REMARK 525 HOH B1455 DISTANCE = 8.71 ANGSTROMS REMARK 525 HOH B1456 DISTANCE = 9.08 ANGSTROMS REMARK 525 HOH B1457 DISTANCE = 9.45 ANGSTROMS REMARK 525 HOH B1458 DISTANCE = 10.62 ANGSTROMS REMARK 525 HOH B1459 DISTANCE = 15.56 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1004 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 16 OD1 REMARK 620 2 GLU A 19 OE1 118.0 REMARK 620 3 GLU A 19 OE1 115.1 53.3 REMARK 620 4 GLU A 19 OE2 123.5 50.5 8.4 REMARK 620 5 GLU A 19 OE2 121.2 3.2 52.0 48.8 REMARK 620 6 HOH A1137 O 72.8 113.5 63.0 68.8 113.2 REMARK 620 7 HOH A1187 O 114.7 117.6 75.9 73.7 114.6 55.6 REMARK 620 8 HOH A1298 O 76.5 75.5 127.5 126.0 77.5 148.5 149.0 REMARK 620 9 GLU B 29 OE1 152.4 75.3 92.3 83.9 72.8 126.4 73.1 84.7 REMARK 620 N 1 2 3 4 5 6 7 8 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1003 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 29 OE1 REMARK 620 2 GLU A 29 OE2 44.2 REMARK 620 3 GLU A 29 OE2 56.3 12.6 REMARK 620 4 ASP A 140 OD1 88.5 106.3 106.6 REMARK 620 5 ASP A 140 OD2 86.2 129.3 139.6 52.9 REMARK 620 6 HOH A1158 O 148.9 161.3 152.1 89.5 68.2 REMARK 620 7 HOH A1279 O 111.3 134.7 140.5 110.5 62.6 41.6 REMARK 620 8 HOH A1279 O 56.3 82.7 93.5 118.8 74.4 98.4 56.9 REMARK 620 9 HOH B1112 O 92.9 65.9 63.1 165.7 141.3 96.5 82.1 73.2 REMARK 620 N 1 2 3 4 5 6 7 8 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1002 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 30 OD1 REMARK 620 2 ASP A 30 OD2 53.7 REMARK 620 3 ASN A 136 O 108.3 99.1 REMARK 620 4 ASN A 136 OD1 130.3 76.7 73.4 REMARK 620 5 GLN A 139 O 76.9 128.9 83.1 148.3 REMARK 620 6 ASN A 142 O 89.4 86.5 161.3 90.7 107.3 REMARK 620 7 ASN A 142 OD1 150.0 148.0 90.3 76.8 82.4 76.2 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B1002 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 30 OD1 REMARK 620 2 ASP B 30 OD2 53.4 REMARK 620 3 ASN B 136 O 106.1 96.9 REMARK 620 4 ASN B 136 OD1 130.0 76.6 74.5 REMARK 620 5 GLN B 139 O 77.0 128.7 83.7 149.0 REMARK 620 6 ASN B 142 O 88.8 87.1 163.9 91.4 106.0 REMARK 620 7 ASN B 142 OD1 149.7 148.9 92.6 77.5 81.7 76.5 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GDS A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 1004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA B 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide GDS B 1001 and CYS B REMARK 800 47 DBREF 6THO A 2 219 UNP Q8YY76 Q8YY76_NOSS1 25 242 DBREF 6THO B 2 219 UNP Q8YY76 Q8YY76_NOSS1 25 242 SEQADV 6THO GLY A -2 UNP Q8YY76 EXPRESSION TAG SEQADV 6THO PRO A -1 UNP Q8YY76 EXPRESSION TAG SEQADV 6THO HIS A 0 UNP Q8YY76 EXPRESSION TAG SEQADV 6THO MET A 1 UNP Q8YY76 EXPRESSION TAG SEQADV 6THO GLY B -2 UNP Q8YY76 EXPRESSION TAG SEQADV 6THO PRO B -1 UNP Q8YY76 EXPRESSION TAG SEQADV 6THO HIS B 0 UNP Q8YY76 EXPRESSION TAG SEQADV 6THO MET B 1 UNP Q8YY76 EXPRESSION TAG SEQRES 1 A 222 GLY PRO HIS MET GLN THR LEU THR LEU SER PRO ASN LEU SEQRES 2 A 222 ILE GLY PHE ASN SER ASN GLU GLY GLU LYS LEU LEU LEU SEQRES 3 A 222 THR SER ARG SER ARG GLU ASP PHE PHE PRO LEU SER MET SEQRES 4 A 222 GLN PHE VAL THR GLN VAL ASN GLN ALA TYR CYS GLY VAL SEQRES 5 A 222 ALA SER ILE ILE MET VAL LEU ASN SER LEU GLY ILE ASN SEQRES 6 A 222 ALA PRO GLU THR ALA GLN TYR SER PRO TYR ARG VAL PHE SEQRES 7 A 222 THR GLN ASP ASN PHE PHE SER ASN GLU LYS THR LYS ALA SEQRES 8 A 222 VAL ILE ALA PRO GLU VAL VAL ALA ARG GLN GLY MET THR SEQRES 9 A 222 LEU ASP GLU LEU GLY ARG LEU ILE ALA SER TYR GLY VAL SEQRES 10 A 222 LYS VAL LYS VAL ASN HIS ALA SER ASP THR ASN ILE GLU SEQRES 11 A 222 ASP PHE ARG LYS GLN VAL ALA GLU ASN LEU LYS GLN ASP SEQRES 12 A 222 GLY ASN PHE VAL ILE VAL ASN TYR LEU ARG LYS GLU ILE SEQRES 13 A 222 GLY GLN GLU ARG GLY GLY HIS ILE SER PRO LEU ALA ALA SEQRES 14 A 222 TYR ASN GLU GLN THR ASP ARG PHE LEU ILE MET ASP VAL SEQRES 15 A 222 SER ARG TYR LYS TYR PRO PRO VAL TRP VAL LYS THR THR SEQRES 16 A 222 ASP LEU TRP LYS ALA MET ASN THR VAL ASP SER VAL SER SEQRES 17 A 222 GLN LYS THR ARG GLY PHE VAL PHE VAL SER LYS THR GLN SEQRES 18 A 222 ASP SEQRES 1 B 222 GLY PRO HIS MET GLN THR LEU THR LEU SER PRO ASN LEU SEQRES 2 B 222 ILE GLY PHE ASN SER ASN GLU GLY GLU LYS LEU LEU LEU SEQRES 3 B 222 THR SER ARG SER ARG GLU ASP PHE PHE PRO LEU SER MET SEQRES 4 B 222 GLN PHE VAL THR GLN VAL ASN GLN ALA TYR CYS GLY VAL SEQRES 5 B 222 ALA SER ILE ILE MET VAL LEU ASN SER LEU GLY ILE ASN SEQRES 6 B 222 ALA PRO GLU THR ALA GLN TYR SER PRO TYR ARG VAL PHE SEQRES 7 B 222 THR GLN ASP ASN PHE PHE SER ASN GLU LYS THR LYS ALA SEQRES 8 B 222 VAL ILE ALA PRO GLU VAL VAL ALA ARG GLN GLY MET THR SEQRES 9 B 222 LEU ASP GLU LEU GLY ARG LEU ILE ALA SER TYR GLY VAL SEQRES 10 B 222 LYS VAL LYS VAL ASN HIS ALA SER ASP THR ASN ILE GLU SEQRES 11 B 222 ASP PHE ARG LYS GLN VAL ALA GLU ASN LEU LYS GLN ASP SEQRES 12 B 222 GLY ASN PHE VAL ILE VAL ASN TYR LEU ARG LYS GLU ILE SEQRES 13 B 222 GLY GLN GLU ARG GLY GLY HIS ILE SER PRO LEU ALA ALA SEQRES 14 B 222 TYR ASN GLU GLN THR ASP ARG PHE LEU ILE MET ASP VAL SEQRES 15 B 222 SER ARG TYR LYS TYR PRO PRO VAL TRP VAL LYS THR THR SEQRES 16 B 222 ASP LEU TRP LYS ALA MET ASN THR VAL ASP SER VAL SER SEQRES 17 B 222 GLN LYS THR ARG GLY PHE VAL PHE VAL SER LYS THR GLN SEQRES 18 B 222 ASP HET GDS A1001 60 HET CA A1002 1 HET CA A1003 1 HET CA A1004 1 HET GDS B1001 60 HET CA B1002 1 HETNAM GDS OXIDIZED GLUTATHIONE DISULFIDE HETNAM CA CALCIUM ION FORMUL 3 GDS 2(C20 H32 N6 O12 S2) FORMUL 4 CA 4(CA 2+) FORMUL 9 HOH *720(H2 O) HELIX 1 AA1 SER A 15 SER A 25 1 11 HELIX 2 AA2 ASP A 30 PHE A 38 1 9 HELIX 3 AA3 TYR A 46 LEU A 59 1 14 HELIX 4 AA4 ASN A 79 SER A 82 5 4 HELIX 5 AA5 ASN A 83 ILE A 90 1 8 HELIX 6 AA6 ALA A 91 GLY A 99 1 9 HELIX 7 AA7 THR A 101 SER A 111 1 11 HELIX 8 AA8 SER A 122 THR A 124 5 3 HELIX 9 AA9 ASN A 125 LYS A 138 1 14 HELIX 10 AB1 LYS A 151 GLY A 154 5 4 HELIX 11 AB2 THR A 191 ASN A 199 1 9 HELIX 12 AB3 SER B 15 THR B 24 1 10 HELIX 13 AB4 ASP B 30 PHE B 38 1 9 HELIX 14 AB5 TYR B 46 GLY B 60 1 15 HELIX 15 AB6 ASN B 83 ILE B 90 1 8 HELIX 16 AB7 ALA B 91 GLY B 99 1 9 HELIX 17 AB8 THR B 101 SER B 111 1 11 HELIX 18 AB9 SER B 122 THR B 124 5 3 HELIX 19 AC1 ASN B 125 GLN B 139 1 15 HELIX 20 AC2 LYS B 151 GLY B 154 5 4 HELIX 21 AC3 THR B 191 ASN B 199 1 9 SHEET 1 AA1 7 ILE A 11 GLY A 12 0 SHEET 2 AA1 7 VAL A 187 LYS A 190 -1 O TRP A 188 N ILE A 11 SHEET 3 AA1 7 ARG A 173 ILE A 176 -1 N ILE A 176 O VAL A 187 SHEET 4 AA1 7 GLY A 159 ASN A 168 -1 N ASN A 168 O ARG A 173 SHEET 5 AA1 7 ASN A 142 LEU A 149 -1 N TYR A 148 O HIS A 160 SHEET 6 AA1 7 GLY A 210 SER A 215 -1 O GLY A 210 N ASN A 147 SHEET 7 AA1 7 LYS A 115 HIS A 120 -1 N ASN A 119 O PHE A 211 SHEET 1 AA2 2 VAL A 201 ASP A 202 0 SHEET 2 AA2 2 LYS A 207 THR A 208 -1 O LYS A 207 N ASP A 202 SHEET 1 AA3 7 ILE B 11 GLY B 12 0 SHEET 2 AA3 7 VAL B 187 LYS B 190 -1 O TRP B 188 N ILE B 11 SHEET 3 AA3 7 ARG B 173 ILE B 176 -1 N ILE B 176 O VAL B 187 SHEET 4 AA3 7 GLY B 159 ASN B 168 -1 N ASN B 168 O ARG B 173 SHEET 5 AA3 7 ASN B 142 LEU B 149 -1 N TYR B 148 O HIS B 160 SHEET 6 AA3 7 GLY B 210 SER B 215 -1 O GLY B 210 N ASN B 147 SHEET 7 AA3 7 LYS B 115 HIS B 120 -1 N ASN B 119 O PHE B 211 SHEET 1 AA4 2 VAL B 201 ASP B 202 0 SHEET 2 AA4 2 LYS B 207 THR B 208 -1 O LYS B 207 N ASP B 202 LINK SG CYS A 47 C2 GDS A1001 1555 1555 1.79 LINK NE2BGLN A 98 OE8 GDS A1001 1555 1555 1.30 LINK SG CYS B 47 C2 GDS B1001 1555 1555 1.77 LINK OD1 ASN A 16 CA CA A1004 1555 1555 2.43 LINK OE1AGLU A 19 CA CA A1004 1555 1555 2.49 LINK OE1BGLU A 19 CA CA A1004 1555 1555 2.49 LINK OE2AGLU A 19 CA CA A1004 1555 1555 2.62 LINK OE2BGLU A 19 CA CA A1004 1555 1555 2.50 LINK OE1BGLU A 29 CA CA A1003 1555 1555 2.27 LINK OE2AGLU A 29 CA CA A1003 1555 1555 2.58 LINK OE2BGLU A 29 CA CA A1003 1555 1555 2.39 LINK OD1 ASP A 30 CA CA A1002 1555 1555 2.43 LINK OD2 ASP A 30 CA CA A1002 1555 1555 2.48 LINK O ASN A 136 CA CA A1002 1555 1555 2.30 LINK OD1 ASN A 136 CA CA A1002 1555 1555 2.46 LINK O GLN A 139 CA CA A1002 1555 1555 2.34 LINK OD1 ASP A 140 CA CA A1003 1555 1555 2.49 LINK OD2 ASP A 140 CA CA A1003 1555 1555 2.43 LINK O ASN A 142 CA CA A1002 1555 1555 2.31 LINK OD1 ASN A 142 CA CA A1002 1555 1555 2.33 LINK CA CA A1003 O AHOH A1158 1555 1555 2.35 LINK CA CA A1003 O BHOH A1279 1555 1555 2.41 LINK CA CA A1003 O AHOH A1279 1555 1555 2.40 LINK CA CA A1003 O HOH B1112 1555 1555 2.24 LINK CA CA A1003 O HOH B1157 1555 1555 2.35 LINK CA CA A1004 O HOH A1137 1555 1555 2.48 LINK CA CA A1004 O BHOH A1187 1555 1555 2.01 LINK CA CA A1004 O HOH A1298 1555 1555 2.36 LINK CA CA A1004 OE1AGLU B 29 1555 1555 2.31 LINK CA CA A1004 OE1BGLU B 29 1555 1555 2.46 LINK CA CA A1004 OE2BGLU B 29 1555 1555 2.39 LINK CA CA A1004 O HOH B1124 1555 1555 2.50 LINK OD1 ASP B 30 CA CA B1002 1555 1555 2.44 LINK OD2 ASP B 30 CA CA B1002 1555 1555 2.44 LINK O ASN B 136 CA CA B1002 1555 1555 2.26 LINK OD1 ASN B 136 CA CA B1002 1555 1555 2.45 LINK O GLN B 139 CA CA B1002 1555 1555 2.37 LINK O ASN B 142 CA CA B1002 1555 1555 2.33 LINK OD1 ASN B 142 CA CA B1002 1555 1555 2.33 CISPEP 1 GLY A -2 PRO A -1 0 -1.19 CISPEP 2 SER A 70 PRO A 71 0 8.81 CISPEP 3 GLU A 156 ARG A 157 0 -0.43 CISPEP 4 GLU A 156 ARG A 157 0 -0.55 CISPEP 5 SER B 70 PRO B 71 0 8.70 CISPEP 6 SER B 70 PRO B 71 0 7.79 CISPEP 7 GLU B 156 ARG B 157 0 -0.20 CISPEP 8 GLU B 156 ARG B 157 0 -3.32 SITE 1 AC1 21 GLN A 41 GLN A 44 ALA A 45 TYR A 46 SITE 2 AC1 21 CYS A 47 ARG A 97 GLN A 98 GLY A 99 SITE 3 AC1 21 MET A 100 ASN A 147 GLY A 159 ASP A 202 SITE 4 AC1 21 ARG A 209 HOH A1116 HOH A1124 HOH A1167 SITE 5 AC1 21 HOH A1200 HOH A1206 HOH A1220 HOH A1235 SITE 6 AC1 21 HOH A1271 SITE 1 AC2 4 ASP A 30 ASN A 136 GLN A 139 ASN A 142 SITE 1 AC3 6 GLU A 29 ASP A 140 HOH A1158 HOH A1279 SITE 2 AC3 6 HOH B1112 HOH B1157 SITE 1 AC4 7 ASN A 16 GLU A 19 HOH A1137 HOH A1187 SITE 2 AC4 7 HOH A1298 GLU B 29 HOH B1124 SITE 1 AC5 4 ASP B 30 ASN B 136 GLN B 139 ASN B 142 SITE 1 AC6 30 GLN B 41 GLN B 44 ALA B 45 TYR B 46 SITE 2 AC6 30 GLY B 48 VAL B 49 ALA B 50 SER B 51 SITE 3 AC6 30 ARG B 97 GLN B 98 GLY B 99 MET B 100 SITE 4 AC6 30 SER B 122 ASP B 123 THR B 124 ASN B 125 SITE 5 AC6 30 ASN B 147 GLY B 159 HIS B 160 ILE B 161 SITE 6 AC6 30 VAL B 179 ASP B 202 ARG B 209 HOH B1139 SITE 7 AC6 30 HOH B1189 HOH B1207 HOH B1237 HOH B1271 SITE 8 AC6 30 HOH B1308 HOH B1350 CRYST1 49.283 57.956 139.470 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020291 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017254 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007170 0.00000