HEADER TRANSFERASE 21-NOV-19 6TI3 TITLE APO-SHMT FROM STREPTOCOCCUS THERMOPHILUS TYR55SER VARIANT IN COMPLEX TITLE 2 WITH D-THREONINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERINE HYDROXYMETHYLTRANSFERASE; COMPND 3 CHAIN: A, C, B, D; COMPND 4 SYNONYM: SERINE METHYLASE; COMPND 5 EC: 2.1.2.1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS THERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 1308; SOURCE 4 GENE: GLYA, CDA68_00974, DID82_07515; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PYRIDOXAL PHOSPHATE; X-RAY CRYSTALLOGRAPHY; HYDROXYMETHYLTRANSFERASE; KEYWDS 2 PROTON ABSTRACTION; TETRAHYDROFOLATE-INDEPENDENT, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR G.PETRILLO,K.HERNANDEZ,J.BUJONS,P.CLAPES,I.USON REVDAT 2 24-JAN-24 6TI3 1 REMARK REVDAT 1 29-APR-20 6TI3 0 JRNL AUTH G.PETRILLO,K.HERNANDEZ,J.BUJONS,P.CLAPES,I.USON JRNL TITL STRUCTURAL INSIGHTS INTO NUCLEOPHILE SUBSTRATE SPECIFICITY JRNL TITL 2 IN VARIANTS OF N-SERINE HYDROXYMETHYLTRANSFERASE FROM JRNL TITL 3 STREPTOCOCCUS THERMOPHILUS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.96 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0222 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.96 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 100.09 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 208923 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.97 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.02 REMARK 3 REFLECTION IN BIN (WORKING SET) : 15299 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.98 REMARK 3 BIN R VALUE (WORKING SET) : 0.3110 REMARK 3 BIN FREE R VALUE SET COUNT : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 12472 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 51 REMARK 3 SOLVENT ATOMS : 825 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.78 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.61000 REMARK 3 B22 (A**2) : 0.06000 REMARK 3 B33 (A**2) : 2.85000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -2.12000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.104 REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.074 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.792 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.968 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 12789 ; 0.017 ; 0.015 REMARK 3 BOND LENGTHS OTHERS (A): 11704 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 17359 ; 1.884 ; 1.756 REMARK 3 BOND ANGLES OTHERS (DEGREES): 27360 ; 0.634 ; 1.739 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 1642 ; 6.454 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 502 ;35.077 ;22.191 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1876 ;14.323 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 56 ;14.725 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1699 ; 0.097 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 14508 ; 0.012 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 2270 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 6TI3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 22-NOV-19. REMARK 100 THE DEPOSITION ID IS D_1292105434. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-JUL-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALBA REMARK 200 BEAMLINE : XALOC REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9330 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XPREP REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 208923 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.960 REMARK 200 RESOLUTION RANGE LOW (A) : 100.090 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 8.100 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.97 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.02 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.09000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4WXG REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 71.17 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.27 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PLP 0.1M D-THREONINE 5MM CACODYLATE REMARK 280 0.1M PH 6.5 SODIUM CITRATE 1.2M, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 100.19650 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 56.84600 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 100.19650 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 56.84600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7070 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28010 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -44.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7090 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28050 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -54.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ILE A 2 REMARK 465 PHE A 3 REMARK 465 ASP A 4 REMARK 465 LYS A 5 REMARK 465 GLU A 6 REMARK 465 MET C 1 REMARK 465 ILE C 2 REMARK 465 PHE C 3 REMARK 465 ASP C 4 REMARK 465 LYS C 5 REMARK 465 GLU C 6 REMARK 465 MET B 1 REMARK 465 ILE B 2 REMARK 465 PHE B 3 REMARK 465 ASP B 4 REMARK 465 LYS B 5 REMARK 465 GLU B 6 REMARK 465 MET D 1 REMARK 465 ILE D 2 REMARK 465 PHE D 3 REMARK 465 ASP D 4 REMARK 465 LYS D 5 REMARK 465 GLU D 6 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 679 O HOH B 722 1.93 REMARK 500 O HOH B 751 O HOH B 777 1.94 REMARK 500 O HOH B 679 O HOH B 751 1.95 REMARK 500 O HOH A 788 O HOH A 796 2.02 REMARK 500 O HOH B 805 O HOH B 814 2.02 REMARK 500 O HOH C 679 O HOH C 796 2.04 REMARK 500 O HOH A 613 O HOH A 712 2.05 REMARK 500 O HOH A 665 O HOH A 776 2.12 REMARK 500 O HOH A 767 O HOH A 835 2.14 REMARK 500 O HOH A 695 O HOH A 771 2.14 REMARK 500 O HOH C 790 O HOH B 762 2.14 REMARK 500 O HOH B 740 O HOH B 805 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH D 664 O HOH D 705 2656 2.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ASP C 394 CB ASP C 394 CG -0.134 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 192 CB - CG - OD1 ANGL. DEV. = 6.2 DEGREES REMARK 500 ARG A 236 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 ARG A 372 NE - CZ - NH2 ANGL. DEV. = -4.1 DEGREES REMARK 500 ARG C 363 NE - CZ - NH2 ANGL. DEV. = -4.6 DEGREES REMARK 500 ASP C 394 CB - CA - C ANGL. DEV. = -13.7 DEGREES REMARK 500 ARG B 180 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 PRO B 367 C - N - CA ANGL. DEV. = -10.1 DEGREES REMARK 500 ASP D 12 CB - CG - OD1 ANGL. DEV. = 5.9 DEGREES REMARK 500 ASP D 12 CB - CG - OD2 ANGL. DEV. = -5.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 62 51.89 -141.65 REMARK 500 PRO A 112 133.85 -37.83 REMARK 500 ALA A 177 17.94 -148.84 REMARK 500 LYS A 230 -130.15 92.16 REMARK 500 ARG A 233 31.53 70.35 REMARK 500 SER A 311 -2.49 74.10 REMARK 500 ASN A 316 -148.00 -130.68 REMARK 500 ASN A 341 40.65 70.89 REMARK 500 ASN A 347 126.04 -170.15 REMARK 500 THR A 359 159.94 65.82 REMARK 500 ASP A 394 33.19 -93.11 REMARK 500 PRO A 396 -36.60 -38.33 REMARK 500 LYS C 62 49.46 -143.67 REMARK 500 ALA C 177 23.07 -143.93 REMARK 500 LYS C 230 -134.11 90.34 REMARK 500 ASN C 316 -147.35 -129.19 REMARK 500 GLU C 352 130.21 -39.23 REMARK 500 THR C 359 162.62 66.43 REMARK 500 PHE C 413 70.48 -117.02 REMARK 500 ALA B 177 22.90 -141.42 REMARK 500 LYS B 230 -136.58 86.07 REMARK 500 ASN B 316 -148.30 -135.27 REMARK 500 THR B 359 159.56 71.30 REMARK 500 ALA D 177 21.32 -143.60 REMARK 500 LYS D 230 -137.38 87.50 REMARK 500 ASN D 316 -141.99 -126.67 REMARK 500 ASN D 347 130.98 -174.34 REMARK 500 GLU D 352 139.95 -36.76 REMARK 500 THR D 359 162.12 75.74 REMARK 500 ASN D 392 47.68 -109.44 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 236 0.12 SIDE CHAIN REMARK 500 ARG A 308 0.08 SIDE CHAIN REMARK 500 ARG A 372 0.07 SIDE CHAIN REMARK 500 ARG A 403 0.08 SIDE CHAIN REMARK 500 ARG C 167 0.19 SIDE CHAIN REMARK 500 ARG C 236 0.13 SIDE CHAIN REMARK 500 ARG C 403 0.12 SIDE CHAIN REMARK 500 ARG B 401 0.18 SIDE CHAIN REMARK 500 ARG D 236 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA D 501 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA D 203 O REMARK 620 2 HIS D 229 O 109.5 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DTH A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL C 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DTH C 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DTH B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA D 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DTH D 502 DBREF 6TI3 A 1 416 UNP Q5MCK9 Q5MCK9_STRTR 1 416 DBREF 6TI3 C 1 416 UNP Q5MCK9 Q5MCK9_STRTR 1 416 DBREF 6TI3 B 1 416 UNP Q5MCK9 Q5MCK9_STRTR 1 416 DBREF 6TI3 D 1 416 UNP Q5MCK9 Q5MCK9_STRTR 1 416 SEQADV 6TI3 SER A 55 UNP Q5MCK9 TYR 55 ENGINEERED MUTATION SEQADV 6TI3 SER C 55 UNP Q5MCK9 TYR 55 ENGINEERED MUTATION SEQADV 6TI3 SER B 55 UNP Q5MCK9 TYR 55 ENGINEERED MUTATION SEQADV 6TI3 SER D 55 UNP Q5MCK9 TYR 55 ENGINEERED MUTATION SEQRES 1 A 416 MET ILE PHE ASP LYS GLU ASP TYR LYS ALA PHE ASP PRO SEQRES 2 A 416 GLU LEU TRP ASN ALA ILE ASP ALA GLU ALA GLU ARG GLN SEQRES 3 A 416 GLN ASN ASN ILE GLU LEU ILE ALA SER GLU ASN VAL VAL SEQRES 4 A 416 SER LYS ALA VAL MET ALA ALA GLN GLY THR LEU LEU THR SEQRES 5 A 416 ASN LYS SER ALA GLU GLY TYR PRO GLY LYS ARG TYR TYR SEQRES 6 A 416 GLY GLY THR ALA VAL ILE ASP VAL VAL GLU THR LEU ALA SEQRES 7 A 416 ILE GLU ARG ALA LYS LYS LEU PHE GLY ALA LYS PHE ALA SEQRES 8 A 416 ASN VAL GLN PRO HIS SER GLY SER GLN ALA ASN ALA ALA SEQRES 9 A 416 VAL TYR MET SER LEU ILE GLN PRO GLY ASP THR VAL MET SEQRES 10 A 416 GLY MET ASP LEU SER ALA GLY GLY HIS LEU THR HIS GLY SEQRES 11 A 416 ALA PRO VAL SER PHE SER GLY LYS THR TYR ASN PHE VAL SEQRES 12 A 416 SER TYR ASN VAL ASP LYS GLU SER GLU LEU LEU ASP TYR SEQRES 13 A 416 ASP ALA ILE LEU ALA GLN ALA LYS GLU VAL ARG PRO LYS SEQRES 14 A 416 LEU ILE VAL ALA GLY ALA SER ALA TYR SER ARG ILE ILE SEQRES 15 A 416 ASP PHE ALA LYS PHE ARG GLU ILE ALA ASP ALA VAL GLY SEQRES 16 A 416 ALA TYR LEU MET VAL ASP MET ALA HIS ILE ALA GLY LEU SEQRES 17 A 416 VAL ALA SER GLY HIS HIS PRO SER PRO VAL PRO TYR ALA SEQRES 18 A 416 HIS VAL THR THR THR THR THR HIS LYS THR LEU ARG GLY SEQRES 19 A 416 PRO ARG GLY GLY LEU ILE LEU THR ASP ASP GLU ASP ILE SEQRES 20 A 416 ALA LYS LYS LEU ASN SER ALA VAL PHE PRO GLY LEU GLN SEQRES 21 A 416 GLY GLY PRO LEU GLU HIS VAL ILE ALA ALA LYS ALA VAL SEQRES 22 A 416 ALA LEU LYS GLU ALA LEU ASP PRO ALA PHE LYS GLU TYR SEQRES 23 A 416 GLY GLU ASN VAL ILE LYS ASN ALA ALA ALA MET ALA ASP SEQRES 24 A 416 VAL PHE ASN GLN HIS PRO ASP PHE ARG VAL ILE SER GLY SEQRES 25 A 416 GLY THR ASN ASN HIS LEU PHE LEU VAL ASP VAL THR LYS SEQRES 26 A 416 VAL VAL GLU ASN GLY LYS VAL ALA GLN ASN VAL LEU GLU SEQRES 27 A 416 GLU VAL ASN ILE THR LEU ASN LYS ASN SER ILE PRO TYR SEQRES 28 A 416 GLU GLN LEU SER PRO PHE LYS THR SER GLY ILE ARG VAL SEQRES 29 A 416 GLY SER PRO ALA ILE THR SER ARG GLY MET GLY GLU ALA SEQRES 30 A 416 GLU SER ARG GLN ILE ALA GLU TRP MET VAL GLU ALA LEU SEQRES 31 A 416 GLU ASN HIS ASP LYS PRO GLU VAL LEU GLU ARG ILE ARG SEQRES 32 A 416 GLY ASP VAL LYS VAL LEU THR ASP ALA PHE PRO LEU TYR SEQRES 1 C 416 MET ILE PHE ASP LYS GLU ASP TYR LYS ALA PHE ASP PRO SEQRES 2 C 416 GLU LEU TRP ASN ALA ILE ASP ALA GLU ALA GLU ARG GLN SEQRES 3 C 416 GLN ASN ASN ILE GLU LEU ILE ALA SER GLU ASN VAL VAL SEQRES 4 C 416 SER LYS ALA VAL MET ALA ALA GLN GLY THR LEU LEU THR SEQRES 5 C 416 ASN LYS SER ALA GLU GLY TYR PRO GLY LYS ARG TYR TYR SEQRES 6 C 416 GLY GLY THR ALA VAL ILE ASP VAL VAL GLU THR LEU ALA SEQRES 7 C 416 ILE GLU ARG ALA LYS LYS LEU PHE GLY ALA LYS PHE ALA SEQRES 8 C 416 ASN VAL GLN PRO HIS SER GLY SER GLN ALA ASN ALA ALA SEQRES 9 C 416 VAL TYR MET SER LEU ILE GLN PRO GLY ASP THR VAL MET SEQRES 10 C 416 GLY MET ASP LEU SER ALA GLY GLY HIS LEU THR HIS GLY SEQRES 11 C 416 ALA PRO VAL SER PHE SER GLY LYS THR TYR ASN PHE VAL SEQRES 12 C 416 SER TYR ASN VAL ASP LYS GLU SER GLU LEU LEU ASP TYR SEQRES 13 C 416 ASP ALA ILE LEU ALA GLN ALA LYS GLU VAL ARG PRO LYS SEQRES 14 C 416 LEU ILE VAL ALA GLY ALA SER ALA TYR SER ARG ILE ILE SEQRES 15 C 416 ASP PHE ALA LYS PHE ARG GLU ILE ALA ASP ALA VAL GLY SEQRES 16 C 416 ALA TYR LEU MET VAL ASP MET ALA HIS ILE ALA GLY LEU SEQRES 17 C 416 VAL ALA SER GLY HIS HIS PRO SER PRO VAL PRO TYR ALA SEQRES 18 C 416 HIS VAL THR THR THR THR THR HIS LYS THR LEU ARG GLY SEQRES 19 C 416 PRO ARG GLY GLY LEU ILE LEU THR ASP ASP GLU ASP ILE SEQRES 20 C 416 ALA LYS LYS LEU ASN SER ALA VAL PHE PRO GLY LEU GLN SEQRES 21 C 416 GLY GLY PRO LEU GLU HIS VAL ILE ALA ALA LYS ALA VAL SEQRES 22 C 416 ALA LEU LYS GLU ALA LEU ASP PRO ALA PHE LYS GLU TYR SEQRES 23 C 416 GLY GLU ASN VAL ILE LYS ASN ALA ALA ALA MET ALA ASP SEQRES 24 C 416 VAL PHE ASN GLN HIS PRO ASP PHE ARG VAL ILE SER GLY SEQRES 25 C 416 GLY THR ASN ASN HIS LEU PHE LEU VAL ASP VAL THR LYS SEQRES 26 C 416 VAL VAL GLU ASN GLY LYS VAL ALA GLN ASN VAL LEU GLU SEQRES 27 C 416 GLU VAL ASN ILE THR LEU ASN LYS ASN SER ILE PRO TYR SEQRES 28 C 416 GLU GLN LEU SER PRO PHE LYS THR SER GLY ILE ARG VAL SEQRES 29 C 416 GLY SER PRO ALA ILE THR SER ARG GLY MET GLY GLU ALA SEQRES 30 C 416 GLU SER ARG GLN ILE ALA GLU TRP MET VAL GLU ALA LEU SEQRES 31 C 416 GLU ASN HIS ASP LYS PRO GLU VAL LEU GLU ARG ILE ARG SEQRES 32 C 416 GLY ASP VAL LYS VAL LEU THR ASP ALA PHE PRO LEU TYR SEQRES 1 B 416 MET ILE PHE ASP LYS GLU ASP TYR LYS ALA PHE ASP PRO SEQRES 2 B 416 GLU LEU TRP ASN ALA ILE ASP ALA GLU ALA GLU ARG GLN SEQRES 3 B 416 GLN ASN ASN ILE GLU LEU ILE ALA SER GLU ASN VAL VAL SEQRES 4 B 416 SER LYS ALA VAL MET ALA ALA GLN GLY THR LEU LEU THR SEQRES 5 B 416 ASN LYS SER ALA GLU GLY TYR PRO GLY LYS ARG TYR TYR SEQRES 6 B 416 GLY GLY THR ALA VAL ILE ASP VAL VAL GLU THR LEU ALA SEQRES 7 B 416 ILE GLU ARG ALA LYS LYS LEU PHE GLY ALA LYS PHE ALA SEQRES 8 B 416 ASN VAL GLN PRO HIS SER GLY SER GLN ALA ASN ALA ALA SEQRES 9 B 416 VAL TYR MET SER LEU ILE GLN PRO GLY ASP THR VAL MET SEQRES 10 B 416 GLY MET ASP LEU SER ALA GLY GLY HIS LEU THR HIS GLY SEQRES 11 B 416 ALA PRO VAL SER PHE SER GLY LYS THR TYR ASN PHE VAL SEQRES 12 B 416 SER TYR ASN VAL ASP LYS GLU SER GLU LEU LEU ASP TYR SEQRES 13 B 416 ASP ALA ILE LEU ALA GLN ALA LYS GLU VAL ARG PRO LYS SEQRES 14 B 416 LEU ILE VAL ALA GLY ALA SER ALA TYR SER ARG ILE ILE SEQRES 15 B 416 ASP PHE ALA LYS PHE ARG GLU ILE ALA ASP ALA VAL GLY SEQRES 16 B 416 ALA TYR LEU MET VAL ASP MET ALA HIS ILE ALA GLY LEU SEQRES 17 B 416 VAL ALA SER GLY HIS HIS PRO SER PRO VAL PRO TYR ALA SEQRES 18 B 416 HIS VAL THR THR THR THR THR HIS LYS THR LEU ARG GLY SEQRES 19 B 416 PRO ARG GLY GLY LEU ILE LEU THR ASP ASP GLU ASP ILE SEQRES 20 B 416 ALA LYS LYS LEU ASN SER ALA VAL PHE PRO GLY LEU GLN SEQRES 21 B 416 GLY GLY PRO LEU GLU HIS VAL ILE ALA ALA LYS ALA VAL SEQRES 22 B 416 ALA LEU LYS GLU ALA LEU ASP PRO ALA PHE LYS GLU TYR SEQRES 23 B 416 GLY GLU ASN VAL ILE LYS ASN ALA ALA ALA MET ALA ASP SEQRES 24 B 416 VAL PHE ASN GLN HIS PRO ASP PHE ARG VAL ILE SER GLY SEQRES 25 B 416 GLY THR ASN ASN HIS LEU PHE LEU VAL ASP VAL THR LYS SEQRES 26 B 416 VAL VAL GLU ASN GLY LYS VAL ALA GLN ASN VAL LEU GLU SEQRES 27 B 416 GLU VAL ASN ILE THR LEU ASN LYS ASN SER ILE PRO TYR SEQRES 28 B 416 GLU GLN LEU SER PRO PHE LYS THR SER GLY ILE ARG VAL SEQRES 29 B 416 GLY SER PRO ALA ILE THR SER ARG GLY MET GLY GLU ALA SEQRES 30 B 416 GLU SER ARG GLN ILE ALA GLU TRP MET VAL GLU ALA LEU SEQRES 31 B 416 GLU ASN HIS ASP LYS PRO GLU VAL LEU GLU ARG ILE ARG SEQRES 32 B 416 GLY ASP VAL LYS VAL LEU THR ASP ALA PHE PRO LEU TYR SEQRES 1 D 416 MET ILE PHE ASP LYS GLU ASP TYR LYS ALA PHE ASP PRO SEQRES 2 D 416 GLU LEU TRP ASN ALA ILE ASP ALA GLU ALA GLU ARG GLN SEQRES 3 D 416 GLN ASN ASN ILE GLU LEU ILE ALA SER GLU ASN VAL VAL SEQRES 4 D 416 SER LYS ALA VAL MET ALA ALA GLN GLY THR LEU LEU THR SEQRES 5 D 416 ASN LYS SER ALA GLU GLY TYR PRO GLY LYS ARG TYR TYR SEQRES 6 D 416 GLY GLY THR ALA VAL ILE ASP VAL VAL GLU THR LEU ALA SEQRES 7 D 416 ILE GLU ARG ALA LYS LYS LEU PHE GLY ALA LYS PHE ALA SEQRES 8 D 416 ASN VAL GLN PRO HIS SER GLY SER GLN ALA ASN ALA ALA SEQRES 9 D 416 VAL TYR MET SER LEU ILE GLN PRO GLY ASP THR VAL MET SEQRES 10 D 416 GLY MET ASP LEU SER ALA GLY GLY HIS LEU THR HIS GLY SEQRES 11 D 416 ALA PRO VAL SER PHE SER GLY LYS THR TYR ASN PHE VAL SEQRES 12 D 416 SER TYR ASN VAL ASP LYS GLU SER GLU LEU LEU ASP TYR SEQRES 13 D 416 ASP ALA ILE LEU ALA GLN ALA LYS GLU VAL ARG PRO LYS SEQRES 14 D 416 LEU ILE VAL ALA GLY ALA SER ALA TYR SER ARG ILE ILE SEQRES 15 D 416 ASP PHE ALA LYS PHE ARG GLU ILE ALA ASP ALA VAL GLY SEQRES 16 D 416 ALA TYR LEU MET VAL ASP MET ALA HIS ILE ALA GLY LEU SEQRES 17 D 416 VAL ALA SER GLY HIS HIS PRO SER PRO VAL PRO TYR ALA SEQRES 18 D 416 HIS VAL THR THR THR THR THR HIS LYS THR LEU ARG GLY SEQRES 19 D 416 PRO ARG GLY GLY LEU ILE LEU THR ASP ASP GLU ASP ILE SEQRES 20 D 416 ALA LYS LYS LEU ASN SER ALA VAL PHE PRO GLY LEU GLN SEQRES 21 D 416 GLY GLY PRO LEU GLU HIS VAL ILE ALA ALA LYS ALA VAL SEQRES 22 D 416 ALA LEU LYS GLU ALA LEU ASP PRO ALA PHE LYS GLU TYR SEQRES 23 D 416 GLY GLU ASN VAL ILE LYS ASN ALA ALA ALA MET ALA ASP SEQRES 24 D 416 VAL PHE ASN GLN HIS PRO ASP PHE ARG VAL ILE SER GLY SEQRES 25 D 416 GLY THR ASN ASN HIS LEU PHE LEU VAL ASP VAL THR LYS SEQRES 26 D 416 VAL VAL GLU ASN GLY LYS VAL ALA GLN ASN VAL LEU GLU SEQRES 27 D 416 GLU VAL ASN ILE THR LEU ASN LYS ASN SER ILE PRO TYR SEQRES 28 D 416 GLU GLN LEU SER PRO PHE LYS THR SER GLY ILE ARG VAL SEQRES 29 D 416 GLY SER PRO ALA ILE THR SER ARG GLY MET GLY GLU ALA SEQRES 30 D 416 GLU SER ARG GLN ILE ALA GLU TRP MET VAL GLU ALA LEU SEQRES 31 D 416 GLU ASN HIS ASP LYS PRO GLU VAL LEU GLU ARG ILE ARG SEQRES 32 D 416 GLY ASP VAL LYS VAL LEU THR ASP ALA PHE PRO LEU TYR HET GOL A 501 6 HET DTH A 502 8 HET GOL C 501 6 HET DTH C 502 8 HET GOL B 501 6 HET DTH B 502 8 HET NA D 501 1 HET DTH D 502 8 HETNAM GOL GLYCEROL HETNAM DTH D-THREONINE HETNAM NA SODIUM ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 5 GOL 3(C3 H8 O3) FORMUL 6 DTH 4(C4 H9 N O3) FORMUL 11 NA NA 1+ FORMUL 13 HOH *825(H2 O) HELIX 1 AA1 ASP A 12 ASN A 28 1 17 HELIX 2 AA2 SER A 40 GLY A 48 1 9 HELIX 3 AA3 THR A 49 LYS A 54 5 6 HELIX 4 AA4 THR A 68 GLY A 87 1 20 HELIX 5 AA5 SER A 97 ILE A 110 1 14 HELIX 6 AA6 HIS A 126 GLY A 130 5 5 HELIX 7 AA7 SER A 134 TYR A 140 1 7 HELIX 8 AA8 ASP A 155 ARG A 167 1 13 HELIX 9 AA9 ASP A 183 VAL A 194 1 12 HELIX 10 AB1 ILE A 205 SER A 211 1 7 HELIX 11 AB2 ASP A 244 PHE A 256 1 13 HELIX 12 AB3 LEU A 264 ASP A 280 1 17 HELIX 13 AB4 ASP A 280 HIS A 304 1 25 HELIX 14 AB5 SER A 311 GLY A 313 5 3 HELIX 15 AB6 ASN A 329 GLU A 339 1 11 HELIX 16 AB7 SER A 366 ARG A 372 1 7 HELIX 17 AB8 GLY A 375 ASN A 392 1 18 HELIX 18 AB9 LYS A 395 PHE A 413 1 19 HELIX 19 AC1 ASP C 12 ASN C 28 1 17 HELIX 20 AC2 SER C 40 GLY C 48 1 9 HELIX 21 AC3 THR C 49 LYS C 54 5 6 HELIX 22 AC4 THR C 68 GLY C 87 1 20 HELIX 23 AC5 SER C 97 ILE C 110 1 14 HELIX 24 AC6 HIS C 126 GLY C 130 5 5 HELIX 25 AC7 SER C 134 TYR C 140 1 7 HELIX 26 AC8 ASP C 155 ARG C 167 1 13 HELIX 27 AC9 ASP C 183 VAL C 194 1 12 HELIX 28 AD1 ILE C 205 SER C 211 1 7 HELIX 29 AD2 ASP C 244 PHE C 256 1 13 HELIX 30 AD3 LEU C 264 ASP C 280 1 17 HELIX 31 AD4 ASP C 280 HIS C 304 1 25 HELIX 32 AD5 SER C 311 GLY C 313 5 3 HELIX 33 AD6 ASN C 329 GLU C 339 1 11 HELIX 34 AD7 SER C 366 ARG C 372 1 7 HELIX 35 AD8 GLY C 375 ASN C 392 1 18 HELIX 36 AD9 LYS C 395 PHE C 413 1 19 HELIX 37 AE1 TYR B 8 ASP B 12 1 5 HELIX 38 AE2 ASP B 12 ASN B 29 1 18 HELIX 39 AE3 SER B 40 GLY B 48 1 9 HELIX 40 AE4 THR B 49 LYS B 54 5 6 HELIX 41 AE5 THR B 68 GLY B 87 1 20 HELIX 42 AE6 SER B 97 ILE B 110 1 14 HELIX 43 AE7 LEU B 121 GLY B 124 5 4 HELIX 44 AE8 HIS B 126 GLY B 130 5 5 HELIX 45 AE9 SER B 134 TYR B 140 1 7 HELIX 46 AF1 ASP B 155 ARG B 167 1 13 HELIX 47 AF2 ASP B 183 VAL B 194 1 12 HELIX 48 AF3 ILE B 205 SER B 211 1 7 HELIX 49 AF4 ASP B 244 PHE B 256 1 13 HELIX 50 AF5 LEU B 264 ASP B 280 1 17 HELIX 51 AF6 ASP B 280 HIS B 304 1 25 HELIX 52 AF7 SER B 311 GLY B 313 5 3 HELIX 53 AF8 ASN B 329 GLU B 339 1 11 HELIX 54 AF9 SER B 366 ARG B 372 1 7 HELIX 55 AG1 GLY B 375 ASN B 392 1 18 HELIX 56 AG2 LYS B 395 PHE B 413 1 19 HELIX 57 AG3 ASP D 7 PHE D 11 5 5 HELIX 58 AG4 ASP D 12 ASN D 28 1 17 HELIX 59 AG5 SER D 40 GLY D 48 1 9 HELIX 60 AG6 THR D 49 LYS D 54 5 6 HELIX 61 AG7 THR D 68 GLY D 87 1 20 HELIX 62 AG8 SER D 97 ILE D 110 1 14 HELIX 63 AG9 LEU D 121 GLY D 124 5 4 HELIX 64 AH1 HIS D 126 GLY D 130 5 5 HELIX 65 AH2 SER D 134 TYR D 140 1 7 HELIX 66 AH3 ASP D 155 ARG D 167 1 13 HELIX 67 AH4 ASP D 183 ALA D 193 1 11 HELIX 68 AH5 ILE D 205 GLY D 212 1 8 HELIX 69 AH6 ASP D 244 PHE D 256 1 13 HELIX 70 AH7 LEU D 264 ASP D 280 1 17 HELIX 71 AH8 ASP D 280 HIS D 304 1 25 HELIX 72 AH9 SER D 311 GLY D 313 5 3 HELIX 73 AI1 ASN D 329 VAL D 340 1 12 HELIX 74 AI2 SER D 366 ARG D 372 1 7 HELIX 75 AI3 GLY D 375 ASN D 392 1 18 HELIX 76 AI4 LYS D 395 PHE D 413 1 19 SHEET 1 AA1 2 ILE A 30 GLU A 31 0 SHEET 2 AA1 2 ILE A 342 THR A 343 1 O THR A 343 N ILE A 30 SHEET 1 AA2 2 GLY A 58 TYR A 59 0 SHEET 2 AA2 2 LYS A 62 ARG A 63 -1 O LYS A 62 N TYR A 59 SHEET 1 AA3 7 PHE A 90 ASN A 92 0 SHEET 2 AA3 7 GLY A 238 THR A 242 -1 O ILE A 240 N ASN A 92 SHEET 3 AA3 7 VAL A 223 THR A 227 -1 N THR A 224 O LEU A 241 SHEET 4 AA3 7 TYR A 197 ASP A 201 1 N VAL A 200 O THR A 225 SHEET 5 AA3 7 LEU A 170 ALA A 173 1 N ILE A 171 O MET A 199 SHEET 6 AA3 7 THR A 115 MET A 119 1 N MET A 117 O VAL A 172 SHEET 7 AA3 7 ASN A 141 TYR A 145 1 O VAL A 143 N VAL A 116 SHEET 1 AA4 4 ARG A 308 VAL A 309 0 SHEET 2 AA4 4 LEU A 318 ASP A 322 -1 O ASP A 322 N ARG A 308 SHEET 3 AA4 4 GLY A 361 GLY A 365 -1 O VAL A 364 N PHE A 319 SHEET 4 AA4 4 ASN A 345 LYS A 346 -1 N ASN A 345 O ARG A 363 SHEET 1 AA5 2 ILE C 30 GLU C 31 0 SHEET 2 AA5 2 ILE C 342 THR C 343 1 O THR C 343 N ILE C 30 SHEET 1 AA6 2 GLY C 58 TYR C 59 0 SHEET 2 AA6 2 LYS C 62 ARG C 63 -1 O LYS C 62 N TYR C 59 SHEET 1 AA7 7 PHE C 90 ASN C 92 0 SHEET 2 AA7 7 GLY C 238 THR C 242 -1 O THR C 242 N PHE C 90 SHEET 3 AA7 7 VAL C 223 THR C 227 -1 N THR C 224 O LEU C 241 SHEET 4 AA7 7 TYR C 197 ASP C 201 1 N VAL C 200 O THR C 225 SHEET 5 AA7 7 LEU C 170 ALA C 173 1 N ILE C 171 O MET C 199 SHEET 6 AA7 7 THR C 115 MET C 119 1 N MET C 117 O VAL C 172 SHEET 7 AA7 7 ASN C 141 TYR C 145 1 O VAL C 143 N VAL C 116 SHEET 1 AA8 4 ARG C 308 VAL C 309 0 SHEET 2 AA8 4 LEU C 318 ASP C 322 -1 O ASP C 322 N ARG C 308 SHEET 3 AA8 4 GLY C 361 GLY C 365 -1 O VAL C 364 N PHE C 319 SHEET 4 AA8 4 ASN C 345 ASN C 347 -1 N ASN C 345 O ARG C 363 SHEET 1 AA9 2 ILE B 30 GLU B 31 0 SHEET 2 AA9 2 ILE B 342 THR B 343 1 O THR B 343 N ILE B 30 SHEET 1 AB1 2 GLY B 58 TYR B 59 0 SHEET 2 AB1 2 LYS B 62 ARG B 63 -1 O LYS B 62 N TYR B 59 SHEET 1 AB2 7 PHE B 90 ASN B 92 0 SHEET 2 AB2 7 GLY B 238 THR B 242 -1 O ILE B 240 N ASN B 92 SHEET 3 AB2 7 VAL B 223 THR B 227 -1 N THR B 224 O LEU B 241 SHEET 4 AB2 7 TYR B 197 ASP B 201 1 N VAL B 200 O THR B 225 SHEET 5 AB2 7 LEU B 170 ALA B 173 1 N ILE B 171 O MET B 199 SHEET 6 AB2 7 THR B 115 MET B 119 1 N MET B 117 O VAL B 172 SHEET 7 AB2 7 ASN B 141 TYR B 145 1 O VAL B 143 N VAL B 116 SHEET 1 AB3 4 ARG B 308 VAL B 309 0 SHEET 2 AB3 4 LEU B 318 ASP B 322 -1 O ASP B 322 N ARG B 308 SHEET 3 AB3 4 GLY B 361 GLY B 365 -1 O VAL B 364 N PHE B 319 SHEET 4 AB3 4 ASN B 345 ASN B 347 -1 N ASN B 345 O ARG B 363 SHEET 1 AB4 2 ILE D 30 GLU D 31 0 SHEET 2 AB4 2 ILE D 342 THR D 343 1 O THR D 343 N ILE D 30 SHEET 1 AB5 2 GLY D 58 TYR D 59 0 SHEET 2 AB5 2 LYS D 62 ARG D 63 -1 O LYS D 62 N TYR D 59 SHEET 1 AB6 7 PHE D 90 ASN D 92 0 SHEET 2 AB6 7 GLY D 238 THR D 242 -1 O ILE D 240 N ASN D 92 SHEET 3 AB6 7 VAL D 223 THR D 227 -1 N THR D 224 O LEU D 241 SHEET 4 AB6 7 TYR D 197 ASP D 201 1 N VAL D 200 O THR D 225 SHEET 5 AB6 7 LEU D 170 ALA D 173 1 N ILE D 171 O MET D 199 SHEET 6 AB6 7 THR D 115 MET D 119 1 N MET D 117 O VAL D 172 SHEET 7 AB6 7 ASN D 141 TYR D 145 1 O VAL D 143 N VAL D 116 SHEET 1 AB7 4 ARG D 308 VAL D 309 0 SHEET 2 AB7 4 LEU D 318 ASP D 322 -1 O ASP D 322 N ARG D 308 SHEET 3 AB7 4 GLY D 361 GLY D 365 -1 O VAL D 364 N PHE D 319 SHEET 4 AB7 4 ASN D 345 ASN D 347 -1 N ASN D 345 O ARG D 363 LINK O ALA D 203 NA NA D 501 1555 1555 2.49 LINK O HIS D 229 NA NA D 501 1555 1555 2.82 CISPEP 1 PHE A 256 PRO A 257 0 3.44 CISPEP 2 PHE C 256 PRO C 257 0 4.32 CISPEP 3 PHE B 256 PRO B 257 0 8.28 CISPEP 4 PHE D 256 PRO D 257 0 4.58 SITE 1 AC1 5 TYR A 156 ASP A 183 HOH A 625 HOH A 626 SITE 2 AC1 5 HOH A 708 SITE 1 AC2 13 SER A 97 GLY A 98 SER A 99 THR A 227 SITE 2 AC2 13 HIS A 229 LYS A 230 HOH A 690 HOH A 699 SITE 3 AC2 13 GLU C 57 GLY C 261 GLY C 262 HOH C 675 SITE 4 AC2 13 HOH C 706 SITE 1 AC3 7 LEU B 153 ARG B 180 HOH B 687 HOH B 719 SITE 2 AC3 7 ASP C 183 HOH C 624 HOH C 652 SITE 1 AC4 11 GLU A 57 GLY A 261 GLY A 262 HOH A 737 SITE 2 AC4 11 SER C 97 GLY C 98 SER C 99 THR C 227 SITE 3 AC4 11 HIS C 229 LYS C 230 HOH C 608 SITE 1 AC5 9 TYR B 156 ASP B 183 HOH B 610 HOH B 613 SITE 2 AC5 9 HOH B 666 HOH B 687 HOH B 719 HOH B 750 SITE 3 AC5 9 ARG C 180 SITE 1 AC6 10 SER B 97 GLY B 98 SER B 99 THR B 227 SITE 2 AC6 10 HIS B 229 LYS B 230 HOH B 679 HOH B 722 SITE 3 AC6 10 GLU D 57 GLY D 262 SITE 1 AC7 6 ALA D 203 ALA D 206 HIS D 229 LYS D 230 SITE 2 AC7 6 THR D 231 LEU D 232 SITE 1 AC8 10 GLU B 57 GLY B 261 GLY B 262 HOH B 710 SITE 2 AC8 10 SER D 97 GLY D 98 SER D 99 HIS D 229 SITE 3 AC8 10 LYS D 230 HOH D 646 CRYST1 200.393 113.692 133.147 90.00 94.51 90.00 C 1 2 1 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.004990 0.000000 0.000393 0.00000 SCALE2 0.000000 0.008796 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007534 0.00000