HEADER SIGNALING PROTEIN 26-NOV-19 6TJM TITLE CRYSTAL STRUCTURE OF AN ESTROGEN RECEPTOR ALPHA 8-MER PHOSPHOPEPTIDE TITLE 2 IN COMPLEX WITH 14-3-3SIGMA STABILIZED BY PYRROLIDONE1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: 14-3-3 PROTEIN SIGMA; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: EPITHELIAL CELL MARKER PROTEIN 1,STRATIFIN; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: C-TERMINAL PHOSPHOPEPTIDE OF HUMAN ESTROGEN RECEPTOR ALPHA; COMPND 8 CHAIN: B; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SFN, HME1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606 KEYWDS ESTROGEN RECEPTOR, 14-3-3, PPI, STABILISER, COMPLEX, SIGNALING KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.A.ANDREI,F.BOSICA,C.OTTMANN,G.O'MAHONY REVDAT 3 24-JAN-24 6TJM 1 LINK REVDAT 2 10-JUN-20 6TJM 1 JRNL REVDAT 1 29-APR-20 6TJM 0 JRNL AUTH F.BOSICA,S.A.ANDREI,J.F.NEVES,P.BRANDT,A.GUNNARSSON, JRNL AUTH 2 I.LANDRIEU,C.OTTMANN,G.O'MAHONY JRNL TITL DESIGN OF DRUG-LIKE PROTEIN-PROTEIN INTERACTION STABILIZERS JRNL TITL 2 GUIDED BY CHELATION-CONTROLLED BIOACTIVE CONFORMATION JRNL TITL 3 STABILIZATION. JRNL REF CHEMISTRY V. 26 7131 2020 JRNL REFN ISSN 0947-6539 JRNL PMID 32255539 JRNL DOI 10.1002/CHEM.202001608 REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 3500 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 76.16 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 31888 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.218 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.960 REMARK 3 FREE R VALUE TEST SET COUNT : 1583 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 76.1550 - 4.1139 1.00 2916 150 0.1642 0.1833 REMARK 3 2 4.1139 - 3.2653 1.00 2775 172 0.1829 0.2056 REMARK 3 3 3.2653 - 2.8525 1.00 2756 147 0.2205 0.2696 REMARK 3 4 2.8525 - 2.5917 1.00 2762 152 0.2334 0.2236 REMARK 3 5 2.5917 - 2.4059 1.00 2714 148 0.2213 0.2523 REMARK 3 6 2.4059 - 2.2641 1.00 2758 133 0.2103 0.2245 REMARK 3 7 2.2641 - 2.1507 1.00 2746 138 0.2065 0.2223 REMARK 3 8 2.1507 - 2.0571 1.00 2730 125 0.2081 0.2387 REMARK 3 9 2.0571 - 1.9779 1.00 2714 135 0.2285 0.2221 REMARK 3 10 1.9779 - 1.9096 1.00 2707 146 0.2756 0.2854 REMARK 3 11 1.9096 - 1.8500 0.99 2727 137 0.3491 0.3886 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.250 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.560 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 62.11 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID -4 THROUGH 37 ) REMARK 3 ORIGIN FOR THE GROUP (A): 39.6262 29.3544 24.1989 REMARK 3 T TENSOR REMARK 3 T11: 0.3952 T22: 0.2387 REMARK 3 T33: 0.3787 T12: -0.0636 REMARK 3 T13: 0.0096 T23: -0.0420 REMARK 3 L TENSOR REMARK 3 L11: 4.2208 L22: 4.6062 REMARK 3 L33: 5.7325 L12: 1.5061 REMARK 3 L13: 0.1816 L23: -2.1534 REMARK 3 S TENSOR REMARK 3 S11: -0.1970 S12: 0.0447 S13: -0.0547 REMARK 3 S21: -0.2103 S22: 0.0401 S23: -0.1530 REMARK 3 S31: -0.1167 S32: 0.1222 S33: 0.1438 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 38 THROUGH 106 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.9108 25.7945 31.8586 REMARK 3 T TENSOR REMARK 3 T11: 0.3327 T22: 0.3132 REMARK 3 T33: 0.3885 T12: -0.0332 REMARK 3 T13: -0.0495 T23: -0.0569 REMARK 3 L TENSOR REMARK 3 L11: 2.9930 L22: 1.2992 REMARK 3 L33: 6.5463 L12: 0.2201 REMARK 3 L13: -3.5416 L23: -0.2056 REMARK 3 S TENSOR REMARK 3 S11: -0.2653 S12: 0.3357 S13: -0.0756 REMARK 3 S21: -0.0707 S22: 0.0593 S23: 0.1173 REMARK 3 S31: -0.0910 S32: -0.5304 S33: 0.3096 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 107 THROUGH 139 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.3723 25.5396 16.5633 REMARK 3 T TENSOR REMARK 3 T11: 0.4174 T22: 0.5401 REMARK 3 T33: 0.3554 T12: -0.0409 REMARK 3 T13: -0.0831 T23: -0.0339 REMARK 3 L TENSOR REMARK 3 L11: 7.9071 L22: 4.4354 REMARK 3 L33: 7.7471 L12: 1.4230 REMARK 3 L13: -3.3255 L23: -0.0803 REMARK 3 S TENSOR REMARK 3 S11: -0.2500 S12: 1.0316 S13: -0.0702 REMARK 3 S21: -0.5118 S22: -0.0053 S23: 0.1400 REMARK 3 S31: -0.3418 S32: -0.8963 S33: 0.2289 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 140 THROUGH 161 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.9872 22.4330 11.9456 REMARK 3 T TENSOR REMARK 3 T11: 0.4544 T22: 0.8759 REMARK 3 T33: 0.4654 T12: 0.0129 REMARK 3 T13: -0.2034 T23: -0.0508 REMARK 3 L TENSOR REMARK 3 L11: 8.3243 L22: 6.6617 REMARK 3 L33: 2.2303 L12: -3.4940 REMARK 3 L13: -3.7752 L23: 2.9777 REMARK 3 S TENSOR REMARK 3 S11: -0.0277 S12: 0.8188 S13: 0.1889 REMARK 3 S21: -0.6552 S22: -0.5814 S23: 0.7849 REMARK 3 S31: -0.5869 S32: -1.8085 S33: 0.4928 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 162 THROUGH 231 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.7596 8.0635 14.6833 REMARK 3 T TENSOR REMARK 3 T11: 0.4558 T22: 0.5757 REMARK 3 T33: 0.3898 T12: -0.2610 REMARK 3 T13: -0.0121 T23: -0.1076 REMARK 3 L TENSOR REMARK 3 L11: 1.8595 L22: 3.3825 REMARK 3 L33: 2.9656 L12: -1.8080 REMARK 3 L13: -0.7800 L23: 0.9327 REMARK 3 S TENSOR REMARK 3 S11: 0.1063 S12: 0.0104 S13: -0.3152 REMARK 3 S21: 0.0012 S22: -0.3589 S23: 0.4628 REMARK 3 S31: 0.4620 S32: -0.7574 S33: 0.1905 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 591 THROUGH 595 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.5215 13.0806 25.5251 REMARK 3 T TENSOR REMARK 3 T11: 0.5485 T22: 0.6394 REMARK 3 T33: 0.4798 T12: -0.1575 REMARK 3 T13: -0.0081 T23: -0.1021 REMARK 3 L TENSOR REMARK 3 L11: 7.8186 L22: 2.1792 REMARK 3 L33: 7.5244 L12: 1.7010 REMARK 3 L13: 7.2050 L23: 2.7105 REMARK 3 S TENSOR REMARK 3 S11: 0.0592 S12: -0.9794 S13: 0.7587 REMARK 3 S21: 0.3022 S22: 0.1438 S23: -0.0723 REMARK 3 S31: -0.0844 S32: -0.4743 S33: -0.0051 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6TJM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 26-NOV-19. REMARK 100 THE DEPOSITION ID IS D_1292105573. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-JUL-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, DESY REMARK 200 BEAMLINE : P11 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.03320 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31900 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 76.780 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 12.50 REMARK 200 R MERGE (I) : 0.04300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 24.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 11.50 REMARK 200 R MERGE FOR SHELL (I) : 1.25900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.3 REMARK 200 STARTING MODEL: 4JC3 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M MAGNESIUM CHLORIDE HEXAHYDRATE, REMARK 280 0.1 M TRIS, PH 7.0, 10 % V/V PEG 8000, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z REMARK 290 7555 -X+1/2,Y+1/2,-Z REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 31.42050 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 76.15500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 31.42050 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 76.15500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 31.42050 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 76.15500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 31.42050 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 76.15500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: OCTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10230 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 41920 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -102.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 62.84100 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 62.84100 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 76.79200 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 76.79200 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 514 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 71 REMARK 465 GLU A 72 REMARK 465 GLY A 73 REMARK 465 SER A 74 REMARK 465 GLU A 75 REMARK 465 GLU A 76 REMARK 465 LYS A 77 REMARK 465 ACE B 587 REMARK 465 ALA B 588 REMARK 465 GLU B 589 REMARK 465 GLY B 590 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 402 O HOH A 450 2.02 REMARK 500 O HOH A 469 O HOH A 489 2.15 REMARK 500 O HOH A 427 O HOH A 445 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 402 O HOH A 402 4555 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 18 78.44 -105.14 REMARK 500 HIS A 106 -38.96 -132.50 REMARK 500 GLU A 110 47.55 -85.13 REMARK 500 ALA A 111 154.09 174.26 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 301 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 NE5 A 302 O14 REMARK 620 2 NE5 A 302 O11 85.5 REMARK 620 3 HOH A 410 O 81.8 72.3 REMARK 620 4 HOH A 433 O 83.4 168.2 102.3 REMARK 620 5 HOH A 440 O 103.1 94.3 165.5 91.9 REMARK 620 6 HOH A 476 O 165.4 87.4 83.9 102.6 90.1 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NE5 A 302 DBREF 6TJM A 1 231 UNP P31947 1433S_HUMAN 1 231 DBREF 6TJM B 587 595 PDB 6TJM 6TJM 587 595 SEQADV 6TJM GLY A -4 UNP P31947 EXPRESSION TAG SEQADV 6TJM ALA A -3 UNP P31947 EXPRESSION TAG SEQADV 6TJM MET A -2 UNP P31947 EXPRESSION TAG SEQADV 6TJM GLY A -1 UNP P31947 EXPRESSION TAG SEQADV 6TJM SER A 0 UNP P31947 EXPRESSION TAG SEQRES 1 A 236 GLY ALA MET GLY SER MET GLU ARG ALA SER LEU ILE GLN SEQRES 2 A 236 LYS ALA LYS LEU ALA GLU GLN ALA GLU ARG TYR GLU ASP SEQRES 3 A 236 MET ALA ALA PHE MET LYS GLY ALA VAL GLU LYS GLY GLU SEQRES 4 A 236 GLU LEU SER CYS GLU GLU ARG ASN LEU LEU SER VAL ALA SEQRES 5 A 236 TYR LYS ASN VAL VAL GLY GLY GLN ARG ALA ALA TRP ARG SEQRES 6 A 236 VAL LEU SER SER ILE GLU GLN LYS SER ASN GLU GLU GLY SEQRES 7 A 236 SER GLU GLU LYS GLY PRO GLU VAL ARG GLU TYR ARG GLU SEQRES 8 A 236 LYS VAL GLU THR GLU LEU GLN GLY VAL CYS ASP THR VAL SEQRES 9 A 236 LEU GLY LEU LEU ASP SER HIS LEU ILE LYS GLU ALA GLY SEQRES 10 A 236 ASP ALA GLU SER ARG VAL PHE TYR LEU LYS MET LYS GLY SEQRES 11 A 236 ASP TYR TYR ARG TYR LEU ALA GLU VAL ALA THR GLY ASP SEQRES 12 A 236 ASP LYS LYS ARG ILE ILE ASP SER ALA ARG SER ALA TYR SEQRES 13 A 236 GLN GLU ALA MET ASP ILE SER LYS LYS GLU MET PRO PRO SEQRES 14 A 236 THR ASN PRO ILE ARG LEU GLY LEU ALA LEU ASN PHE SER SEQRES 15 A 236 VAL PHE HIS TYR GLU ILE ALA ASN SER PRO GLU GLU ALA SEQRES 16 A 236 ILE SER LEU ALA LYS THR THR PHE ASP GLU ALA MET ALA SEQRES 17 A 236 ASP LEU HIS THR LEU SER GLU ASP SER TYR LYS ASP SER SEQRES 18 A 236 THR LEU ILE MET GLN LEU LEU ARG ASP ASN LEU THR LEU SEQRES 19 A 236 TRP THR SEQRES 1 B 9 ACE ALA GLU GLY PHE PRO ALA TPO VAL HET TPO B 594 16 HET MG A 301 1 HET NE5 A 302 49 HETNAM TPO PHOSPHOTHREONINE HETNAM MG MAGNESIUM ION HETNAM NE5 5-[(2~{R})-2-(4-NITROPHENYL)-4-OXIDANYL-5- HETNAM 2 NE5 OXIDANYLIDENE-3-(PHENYLCARBONYL)-2~{H}-PYRROL-1-YL]-2- HETNAM 3 NE5 OXIDANYL-BENZOIC ACID HETSYN TPO PHOSPHONOTHREONINE FORMUL 2 TPO C4 H10 N O6 P FORMUL 3 MG MG 2+ FORMUL 4 NE5 C24 H16 N2 O8 1+ FORMUL 5 HOH *127(H2 O) HELIX 1 AA1 GLU A 2 ALA A 16 1 15 HELIX 2 AA2 ARG A 18 GLU A 31 1 14 HELIX 3 AA3 SER A 37 SER A 69 1 33 HELIX 4 AA4 PRO A 79 HIS A 106 1 28 HELIX 5 AA5 ASP A 113 ALA A 135 1 23 HELIX 6 AA6 THR A 136 MET A 162 1 27 HELIX 7 AA7 ASN A 166 ILE A 183 1 18 HELIX 8 AA8 SER A 186 ASP A 204 1 19 HELIX 9 AA9 LEU A 205 LEU A 208 5 4 HELIX 10 AB1 SER A 212 THR A 231 1 20 LINK C ALA B 593 N TPO B 594 1555 1555 1.33 LINK C TPO B 594 N VAL B 595 1555 1555 1.33 LINK MG MG A 301 O14 NE5 A 302 1555 1555 2.11 LINK MG MG A 301 O11 NE5 A 302 1555 1555 2.24 LINK MG MG A 301 O HOH A 410 1555 1555 2.11 LINK MG MG A 301 O HOH A 433 1555 1555 1.98 LINK MG MG A 301 O HOH A 440 1555 1555 2.18 LINK MG MG A 301 O HOH A 476 1555 1555 2.13 SITE 1 AC1 5 NE5 A 302 HOH A 410 HOH A 433 HOH A 440 SITE 2 AC1 5 HOH A 476 SITE 1 AC2 14 CYS A 38 ARG A 41 ASN A 42 GLU A 115 SITE 2 AC2 14 PHE A 119 LYS A 122 ILE A 168 GLY A 171 SITE 3 AC2 14 ASP A 215 MG A 301 HOH A 410 HOH A 433 SITE 4 AC2 14 HOH A 476 VAL B 595 CRYST1 62.841 152.310 76.792 90.00 90.00 90.00 C 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015913 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006566 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013022 0.00000