data_6TKT # _entry.id 6TKT # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.371 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 6TKT pdb_00006tkt 10.2210/pdb6tkt/pdb WWPDB D_1292105436 ? ? BMRB 50088 ? ? # _pdbx_database_related.db_name BMRB _pdbx_database_related.details . _pdbx_database_related.db_id 50088 _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.entry_id 6TKT _pdbx_database_status.recvd_initial_deposition_date 2019-11-28 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data REL # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Nielsen, J.T.' 1 0000-0002-9554-4662 'Mulder, F.A.A.' 2 0000-0001-9427-8406 'Toerring, T.' 3 0000-0001-5257-2121 'Poulsen, T.' 4 0000-0002-0763-9996 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Structure _citation.journal_id_ASTM STRUE6 _citation.journal_id_CSD 2005 _citation.journal_id_ISSN 0969-2126 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 28 _citation.language ? _citation.page_first 528 _citation.page_last 539.e9 _citation.title 'Structure and Function of the Bacterial Protein Toxin Phenomycin.' _citation.year 2020 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1016/j.str.2020.03.003 _citation.pdbx_database_id_PubMed 32220302 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Hansen, B.K.' 1 ? primary 'Larsen, C.K.' 2 ? primary 'Nielsen, J.T.' 3 ? primary 'Svenningsen, E.B.' 4 ? primary 'Van, L.B.' 5 ? primary 'Jacobsen, K.M.' 6 ? primary 'Bjerring, M.' 7 ? primary 'Flygaard, R.K.' 8 ? primary 'Jenner, L.B.' 9 ? primary 'Nejsum, L.N.' 10 ? primary 'Brodersen, D.E.' 11 ? primary 'Mulder, F.A.A.' 12 ? primary 'Torring, T.' 13 ? primary 'Poulsen, T.B.' 14 ? # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 6TKT _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.000 _cell.length_a_esd ? _cell.length_b 1.000 _cell.length_b_esd ? _cell.length_c 1.000 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6TKT _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description Pre-phenomycin _entity.formula_weight 9872.159 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GAMANPKTIKAAAYNQARSTLADAGSRTAAKSHPIHGKTDVPVSYGTSLLAAARDEFRQADKKLPAKDKKSDMSIAHYNA VHSAAKTMGIDTW ; _entity_poly.pdbx_seq_one_letter_code_can ;GAMANPKTIKAAAYNQARSTLADAGSRTAAKSHPIHGKTDVPVSYGTSLLAAARDEFRQADKKLPAKDKKSDMSIAHYNA VHSAAKTMGIDTW ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 ALA n 1 3 MET n 1 4 ALA n 1 5 ASN n 1 6 PRO n 1 7 LYS n 1 8 THR n 1 9 ILE n 1 10 LYS n 1 11 ALA n 1 12 ALA n 1 13 ALA n 1 14 TYR n 1 15 ASN n 1 16 GLN n 1 17 ALA n 1 18 ARG n 1 19 SER n 1 20 THR n 1 21 LEU n 1 22 ALA n 1 23 ASP n 1 24 ALA n 1 25 GLY n 1 26 SER n 1 27 ARG n 1 28 THR n 1 29 ALA n 1 30 ALA n 1 31 LYS n 1 32 SER n 1 33 HIS n 1 34 PRO n 1 35 ILE n 1 36 HIS n 1 37 GLY n 1 38 LYS n 1 39 THR n 1 40 ASP n 1 41 VAL n 1 42 PRO n 1 43 VAL n 1 44 SER n 1 45 TYR n 1 46 GLY n 1 47 THR n 1 48 SER n 1 49 LEU n 1 50 LEU n 1 51 ALA n 1 52 ALA n 1 53 ALA n 1 54 ARG n 1 55 ASP n 1 56 GLU n 1 57 PHE n 1 58 ARG n 1 59 GLN n 1 60 ALA n 1 61 ASP n 1 62 LYS n 1 63 LYS n 1 64 LEU n 1 65 PRO n 1 66 ALA n 1 67 LYS n 1 68 ASP n 1 69 LYS n 1 70 LYS n 1 71 SER n 1 72 ASP n 1 73 MET n 1 74 SER n 1 75 ILE n 1 76 ALA n 1 77 HIS n 1 78 TYR n 1 79 ASN n 1 80 ALA n 1 81 VAL n 1 82 HIS n 1 83 SER n 1 84 ALA n 1 85 ALA n 1 86 LYS n 1 87 THR n 1 88 MET n 1 89 GLY n 1 90 ILE n 1 91 ASP n 1 92 THR n 1 93 TRP n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 93 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene phm _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Streptomyces roseoverticillatus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 66429 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q53805_9ACTN _struct_ref.pdbx_db_accession Q53805 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;NPKTIKAAAYNQARSTLADAGSRTAAKSHPIHGKTDVPVSYGTSLLAAARDEFRQADKKLPAKDKKSDMSIAHYNAVHSA AKTMGIDTW ; _struct_ref.pdbx_align_begin 46 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 6TKT _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 5 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 93 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q53805 _struct_ref_seq.db_align_beg 46 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 134 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 5 _struct_ref_seq.pdbx_auth_seq_align_end 93 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 6TKT GLY A 1 ? UNP Q53805 ? ? 'expression tag' 1 1 1 6TKT ALA A 2 ? UNP Q53805 ? ? 'expression tag' 2 2 1 6TKT MET A 3 ? UNP Q53805 ? ? 'expression tag' 3 3 1 6TKT ALA A 4 ? UNP Q53805 ? ? 'expression tag' 4 4 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.spectrometer_id _pdbx_nmr_exptl.sample_state 1 1 1 '2D 1H-15N HSQC' 1 isotropic 2 1 1 '2D 1H-13C HSQC' 1 isotropic 3 1 1 '3D HNCACB' 1 isotropic 4 1 1 '3D HNCO' 1 isotropic 5 1 1 '3D HBHA(CO)NH' 1 isotropic 6 1 1 '3D H(CCO)NH' 1 isotropic 7 1 1 '3D C(CO)NH' 1 isotropic 8 1 1 '3D HCCH-TOCSY' 1 isotropic 9 1 1 '3D HN(CA)CO' 1 isotropic 10 1 1 '3D 1H-15N NOESY' 2 isotropic 11 1 1 '3D 1H-13C NOESY' 2 isotropic # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.pressure_units atm _pdbx_nmr_exptl_sample_conditions.pressure AMBIENT _pdbx_nmr_exptl_sample_conditions.pH 3.25 _pdbx_nmr_exptl_sample_conditions.ionic_strength 10 _pdbx_nmr_exptl_sample_conditions.details ? _pdbx_nmr_exptl_sample_conditions.ionic_strength_err ? _pdbx_nmr_exptl_sample_conditions.ionic_strength_units mM _pdbx_nmr_exptl_sample_conditions.label sample_conditions_1 _pdbx_nmr_exptl_sample_conditions.pH_err 0.1 _pdbx_nmr_exptl_sample_conditions.pH_units pH _pdbx_nmr_exptl_sample_conditions.pressure_err ? _pdbx_nmr_exptl_sample_conditions.temperature_err ? _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '1 mM [U-100% 13C; U-100% 15N] Phenomycin, 10 mM potassium phosphate, 95% H2O/5% D2O' _pdbx_nmr_sample_details.solvent_system '95% H2O/5% D2O' _pdbx_nmr_sample_details.label sample_1 _pdbx_nmr_sample_details.type solution _pdbx_nmr_sample_details.details ? # loop_ _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.type _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.details 1 AVANCE ? Bruker 500 'with a shielded-gradient TXI probe' 2 AVANCE ? Bruker 950 ? # _pdbx_nmr_refine.entry_id 6TKT _pdbx_nmr_refine.method 'torsion angle dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.entry_id 6TKT _pdbx_nmr_ensemble.conformers_calculated_total_number 1000 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.representative_conformer ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 6TKT _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.ordinal _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors 1 'structure calculation' CYANA 3.98 'Guntert, Mumenthaler and Wuthrich' 2 'peak picking' Sparky 3.98 Goddard 3 processing TopSpin ? 'Bruker Biospin' # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6TKT _exptl.crystals_number ? _exptl.details ? _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 6TKT _struct.title 'Structure of the bacterial toxin phenomycin' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6TKT _struct_keywords.text 'PROTEIN, ANTITUMOR PROTEIN' _struct_keywords.pdbx_keywords 'ANTITUMOR PROTEIN' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 LYS A 10 ? ASP A 23 ? LYS A 10 ASP A 23 1 ? 14 HELX_P HELX_P2 AA2 VAL A 43 ? ASP A 61 ? VAL A 43 ASP A 61 1 ? 19 HELX_P HELX_P3 AA3 SER A 74 ? GLY A 89 ? SER A 74 GLY A 89 1 ? 16 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_sheet.id AA1 _struct_sheet.type ? _struct_sheet.number_strands 2 _struct_sheet.details ? # _struct_sheet_order.sheet_id AA1 _struct_sheet_order.range_id_1 1 _struct_sheet_order.range_id_2 2 _struct_sheet_order.offset ? _struct_sheet_order.sense anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 THR A 8 ? ILE A 9 ? THR A 8 ILE A 9 AA1 2 VAL A 41 ? PRO A 42 ? VAL A 41 PRO A 42 # _pdbx_struct_sheet_hbond.sheet_id AA1 _pdbx_struct_sheet_hbond.range_id_1 1 _pdbx_struct_sheet_hbond.range_id_2 2 _pdbx_struct_sheet_hbond.range_1_label_atom_id N _pdbx_struct_sheet_hbond.range_1_label_comp_id ILE _pdbx_struct_sheet_hbond.range_1_label_asym_id A _pdbx_struct_sheet_hbond.range_1_label_seq_id 9 _pdbx_struct_sheet_hbond.range_1_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_1_auth_atom_id N _pdbx_struct_sheet_hbond.range_1_auth_comp_id ILE _pdbx_struct_sheet_hbond.range_1_auth_asym_id A _pdbx_struct_sheet_hbond.range_1_auth_seq_id 9 _pdbx_struct_sheet_hbond.range_2_label_atom_id O _pdbx_struct_sheet_hbond.range_2_label_comp_id VAL _pdbx_struct_sheet_hbond.range_2_label_asym_id A _pdbx_struct_sheet_hbond.range_2_label_seq_id 41 _pdbx_struct_sheet_hbond.range_2_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_2_auth_atom_id O _pdbx_struct_sheet_hbond.range_2_auth_comp_id VAL _pdbx_struct_sheet_hbond.range_2_auth_asym_id A _pdbx_struct_sheet_hbond.range_2_auth_seq_id 41 # _database_PDB_matrix.entry_id 6TKT _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 6TKT _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 1 1 GLY GLY A . n A 1 2 ALA 2 2 2 ALA ALA A . n A 1 3 MET 3 3 3 MET MET A . n A 1 4 ALA 4 4 4 ALA ALA A . n A 1 5 ASN 5 5 5 ASN ASN A . n A 1 6 PRO 6 6 6 PRO PRO A . n A 1 7 LYS 7 7 7 LYS LYS A . n A 1 8 THR 8 8 8 THR THR A . n A 1 9 ILE 9 9 9 ILE ILE A . n A 1 10 LYS 10 10 10 LYS LYS A . n A 1 11 ALA 11 11 11 ALA ALA A . n A 1 12 ALA 12 12 12 ALA ALA A . n A 1 13 ALA 13 13 13 ALA ALA A . n A 1 14 TYR 14 14 14 TYR TYR A . n A 1 15 ASN 15 15 15 ASN ASN A . n A 1 16 GLN 16 16 16 GLN GLN A . n A 1 17 ALA 17 17 17 ALA ALA A . n A 1 18 ARG 18 18 18 ARG ARG A . n A 1 19 SER 19 19 19 SER SER A . n A 1 20 THR 20 20 20 THR THR A . n A 1 21 LEU 21 21 21 LEU LEU A . n A 1 22 ALA 22 22 22 ALA ALA A . n A 1 23 ASP 23 23 23 ASP ASP A . n A 1 24 ALA 24 24 24 ALA ALA A . n A 1 25 GLY 25 25 25 GLY GLY A . n A 1 26 SER 26 26 26 SER SER A . n A 1 27 ARG 27 27 27 ARG ARG A . n A 1 28 THR 28 28 28 THR THR A . n A 1 29 ALA 29 29 29 ALA ALA A . n A 1 30 ALA 30 30 30 ALA ALA A . n A 1 31 LYS 31 31 31 LYS LYS A . n A 1 32 SER 32 32 32 SER SER A . n A 1 33 HIS 33 33 33 HIS HIS A . n A 1 34 PRO 34 34 34 PRO PRO A . n A 1 35 ILE 35 35 35 ILE ILE A . n A 1 36 HIS 36 36 36 HIS HIS A . n A 1 37 GLY 37 37 37 GLY GLY A . n A 1 38 LYS 38 38 38 LYS LYS A . n A 1 39 THR 39 39 39 THR THR A . n A 1 40 ASP 40 40 40 ASP ASP A . n A 1 41 VAL 41 41 41 VAL VAL A . n A 1 42 PRO 42 42 42 PRO PRO A . n A 1 43 VAL 43 43 43 VAL VAL A . n A 1 44 SER 44 44 44 SER SER A . n A 1 45 TYR 45 45 45 TYR TYR A . n A 1 46 GLY 46 46 46 GLY GLY A . n A 1 47 THR 47 47 47 THR THR A . n A 1 48 SER 48 48 48 SER SER A . n A 1 49 LEU 49 49 49 LEU LEU A . n A 1 50 LEU 50 50 50 LEU LEU A . n A 1 51 ALA 51 51 51 ALA ALA A . n A 1 52 ALA 52 52 52 ALA ALA A . n A 1 53 ALA 53 53 53 ALA ALA A . n A 1 54 ARG 54 54 54 ARG ARG A . n A 1 55 ASP 55 55 55 ASP ASP A . n A 1 56 GLU 56 56 56 GLU GLU A . n A 1 57 PHE 57 57 57 PHE PHE A . n A 1 58 ARG 58 58 58 ARG ARG A . n A 1 59 GLN 59 59 59 GLN GLN A . n A 1 60 ALA 60 60 60 ALA ALA A . n A 1 61 ASP 61 61 61 ASP ASP A . n A 1 62 LYS 62 62 62 LYS LYS A . n A 1 63 LYS 63 63 63 LYS LYS A . n A 1 64 LEU 64 64 64 LEU LEU A . n A 1 65 PRO 65 65 65 PRO PRO A . n A 1 66 ALA 66 66 66 ALA ALA A . n A 1 67 LYS 67 67 67 LYS LYS A . n A 1 68 ASP 68 68 68 ASP ASP A . n A 1 69 LYS 69 69 69 LYS LYS A . n A 1 70 LYS 70 70 70 LYS LYS A . n A 1 71 SER 71 71 71 SER SER A . n A 1 72 ASP 72 72 72 ASP ASP A . n A 1 73 MET 73 73 73 MET MET A . n A 1 74 SER 74 74 74 SER SER A . n A 1 75 ILE 75 75 75 ILE ILE A . n A 1 76 ALA 76 76 76 ALA ALA A . n A 1 77 HIS 77 77 77 HIS HIS A . n A 1 78 TYR 78 78 78 TYR TYR A . n A 1 79 ASN 79 79 79 ASN ASN A . n A 1 80 ALA 80 80 80 ALA ALA A . n A 1 81 VAL 81 81 81 VAL VAL A . n A 1 82 HIS 82 82 82 HIS HIS A . n A 1 83 SER 83 83 83 SER SER A . n A 1 84 ALA 84 84 84 ALA ALA A . n A 1 85 ALA 85 85 85 ALA ALA A . n A 1 86 LYS 86 86 86 LYS LYS A . n A 1 87 THR 87 87 87 THR THR A . n A 1 88 MET 88 88 88 MET MET A . n A 1 89 GLY 89 89 89 GLY GLY A . n A 1 90 ILE 90 90 90 ILE ILE A . n A 1 91 ASP 91 91 91 ASP ASP A . n A 1 92 THR 92 92 92 THR THR A . n A 1 93 TRP 93 93 93 TRP TRP A . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 0 ? 1 MORE 0 ? 1 'SSA (A^2)' 6040 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2020-01-22 2 'Structure model' 1 1 2020-04-22 3 'Structure model' 1 2 2020-05-13 4 'Structure model' 1 3 2023-06-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Database references' 4 4 'Structure model' Other # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 3 'Structure model' citation 4 4 'Structure model' database_2 5 4 'Structure model' pdbx_database_status # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.country' 2 2 'Structure model' '_citation.journal_abbrev' 3 2 'Structure model' '_citation.journal_id_ASTM' 4 2 'Structure model' '_citation.journal_id_CSD' 5 2 'Structure model' '_citation.journal_id_ISSN' 6 2 'Structure model' '_citation.pdbx_database_id_DOI' 7 2 'Structure model' '_citation.pdbx_database_id_PubMed' 8 2 'Structure model' '_citation.title' 9 2 'Structure model' '_citation.year' 10 3 'Structure model' '_citation.journal_volume' 11 3 'Structure model' '_citation.page_first' 12 3 'Structure model' '_citation.page_last' 13 4 'Structure model' '_database_2.pdbx_DOI' 14 4 'Structure model' '_database_2.pdbx_database_accession' 15 4 'Structure model' '_pdbx_database_status.status_code_nmr_data' # loop_ _pdbx_nmr_exptl_sample.solution_id _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling 1 Phenomycin 1 ? mM '[U-100% 13C; U-100% 15N]' 1 'potassium phosphate' 10 ? mM 'natural abundance' # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ALA A 4 ? ? -178.19 134.66 2 1 PRO A 34 ? ? -69.74 -170.58 3 1 ASP A 40 ? ? -178.56 145.40 4 1 ASP A 61 ? ? -94.29 34.64 5 1 ASP A 68 ? ? -93.40 32.81 6 1 SER A 71 ? ? 69.75 -75.32 7 1 ASP A 72 ? ? -159.49 27.00 8 1 ASP A 91 ? ? -147.12 33.52 9 1 THR A 92 ? ? -161.96 35.39 10 2 ALA A 4 ? ? -171.94 106.34 11 2 PRO A 34 ? ? -69.77 -170.56 12 2 ASP A 40 ? ? -176.56 144.72 13 2 ASP A 61 ? ? -95.00 34.49 14 2 ASP A 68 ? ? -93.37 32.35 15 2 SER A 71 ? ? 70.04 -74.53 16 2 ASP A 72 ? ? -160.98 25.41 17 3 PRO A 6 ? ? -69.73 -175.16 18 3 PRO A 34 ? ? -69.79 -170.46 19 3 ASP A 40 ? ? -177.74 148.64 20 3 ASP A 61 ? ? -93.94 32.26 21 3 ASP A 68 ? ? -93.56 31.75 22 3 SER A 71 ? ? 70.26 -74.31 23 3 ASP A 72 ? ? -161.22 31.00 24 4 ALA A 4 ? ? -168.47 99.02 25 4 PRO A 34 ? ? -69.79 -170.49 26 4 ASP A 40 ? ? -174.20 145.40 27 4 ASP A 61 ? ? -94.80 32.67 28 4 ASP A 68 ? ? -93.73 31.97 29 4 SER A 71 ? ? 69.79 -75.00 30 4 ASP A 72 ? ? -159.14 30.61 31 5 ALA A 4 ? ? 64.19 108.35 32 5 PRO A 34 ? ? -69.79 -170.59 33 5 ASP A 40 ? ? -179.09 144.91 34 5 ASP A 61 ? ? -95.20 34.62 35 5 ASP A 68 ? ? -93.46 32.81 36 5 SER A 71 ? ? 69.82 -75.28 37 5 ASP A 72 ? ? -159.23 26.85 38 6 ALA A 2 ? ? 54.65 81.70 39 6 ALA A 4 ? ? -171.14 112.65 40 6 PRO A 34 ? ? -69.76 -170.72 41 6 ASP A 40 ? ? -178.96 139.50 42 6 ASP A 61 ? ? -95.65 33.02 43 6 ASP A 68 ? ? -93.46 32.73 44 6 SER A 71 ? ? 69.53 -75.70 45 6 ASP A 72 ? ? -154.92 26.13 46 7 ALA A 4 ? ? -175.87 107.85 47 7 PRO A 34 ? ? -69.80 -170.62 48 7 ASP A 40 ? ? -178.64 142.14 49 7 ASP A 61 ? ? -92.95 33.61 50 7 ASP A 68 ? ? -93.71 33.02 51 7 ASP A 91 ? ? -128.38 -56.13 52 8 ALA A 4 ? ? -177.01 105.07 53 8 PRO A 34 ? ? -69.79 -169.52 54 8 ASP A 61 ? ? -93.80 34.26 55 8 ASP A 68 ? ? -93.49 32.35 56 8 SER A 71 ? ? 70.01 -74.60 57 8 ASP A 72 ? ? -161.31 30.43 58 9 ALA A 4 ? ? -173.07 97.07 59 9 ASN A 5 ? ? -49.13 161.09 60 9 PRO A 6 ? ? -69.81 -170.69 61 9 PRO A 34 ? ? -69.77 -170.53 62 9 ASP A 40 ? ? -178.75 148.89 63 9 ASP A 61 ? ? -95.42 34.39 64 9 ASP A 68 ? ? -93.36 32.64 65 9 SER A 71 ? ? 67.60 -79.24 66 9 ASP A 72 ? ? -154.56 23.68 67 10 ALA A 4 ? ? -178.26 110.06 68 10 PRO A 34 ? ? -69.75 -170.31 69 10 ASP A 40 ? ? -178.12 141.59 70 10 ASP A 68 ? ? -93.09 33.17 71 10 ASP A 91 ? ? -105.24 -63.14 72 11 MET A 3 ? ? 61.29 169.75 73 11 ALA A 4 ? ? 64.75 86.32 74 11 PRO A 34 ? ? -69.73 -170.58 75 11 ASP A 40 ? ? -179.14 149.25 76 11 ASP A 61 ? ? -95.31 34.48 77 11 ASP A 68 ? ? -93.91 31.68 78 11 SER A 71 ? ? 69.93 -74.92 79 11 ASP A 72 ? ? -158.99 24.13 80 11 ASP A 91 ? ? -144.74 33.87 81 11 THR A 92 ? ? -162.98 34.04 82 12 MET A 3 ? ? -170.64 58.60 83 12 ALA A 4 ? ? -174.57 124.53 84 12 PRO A 34 ? ? -69.79 -167.85 85 12 ASP A 40 ? ? -178.75 148.06 86 12 ASP A 61 ? ? -94.20 33.59 87 12 ASP A 68 ? ? -93.54 32.02 88 12 SER A 71 ? ? 70.57 -73.30 89 12 ASP A 72 ? ? -163.71 29.08 90 13 ALA A 2 ? ? -173.99 116.91 91 13 ALA A 4 ? ? -178.22 114.13 92 13 PRO A 34 ? ? -69.79 -170.58 93 13 ASP A 40 ? ? -177.50 136.57 94 13 ASP A 61 ? ? -95.47 34.57 95 13 ASP A 68 ? ? -93.20 32.55 96 13 SER A 71 ? ? 69.58 -75.50 97 13 ASP A 72 ? ? -160.73 27.44 98 13 ASP A 91 ? ? -107.30 -64.67 99 14 MET A 3 ? ? 54.74 -170.34 100 14 ALA A 4 ? ? 64.46 109.31 101 14 PRO A 34 ? ? -69.75 -170.57 102 14 ASP A 40 ? ? -178.96 148.07 103 14 ASP A 61 ? ? -95.74 33.34 104 14 ASP A 68 ? ? -93.51 32.31 105 14 SER A 71 ? ? 67.63 -79.46 106 14 ASP A 72 ? ? -154.61 24.61 107 15 ALA A 2 ? ? -171.51 124.53 108 15 ALA A 4 ? ? -167.98 119.38 109 15 PRO A 34 ? ? -69.72 -170.18 110 15 ASP A 40 ? ? -179.21 144.98 111 15 ASP A 61 ? ? -94.07 33.67 112 15 ASP A 68 ? ? -93.58 32.01 113 15 SER A 71 ? ? 70.39 -73.83 114 15 ASP A 72 ? ? -163.02 29.18 115 16 ALA A 2 ? ? 52.21 83.15 116 16 MET A 3 ? ? -154.85 87.61 117 16 ALA A 4 ? ? -169.79 101.98 118 16 PRO A 34 ? ? -69.82 -169.41 119 16 ASP A 61 ? ? -95.00 31.80 120 16 ASP A 68 ? ? -93.60 32.38 121 16 SER A 71 ? ? 72.41 -69.30 122 16 ASP A 72 ? ? -162.67 26.99 123 17 ALA A 4 ? ? -171.03 101.67 124 17 PRO A 34 ? ? -69.76 -168.95 125 17 ASP A 61 ? ? -95.81 34.54 126 17 ASP A 68 ? ? -93.33 32.98 127 17 SER A 71 ? ? 69.42 -75.79 128 17 ASP A 72 ? ? -157.51 24.71 129 18 ALA A 4 ? ? -173.76 138.47 130 18 PRO A 34 ? ? -69.75 -168.98 131 18 ASP A 61 ? ? -94.85 31.67 132 18 ASP A 68 ? ? -93.66 31.99 133 18 SER A 71 ? ? 70.04 -74.75 134 18 ASP A 72 ? ? -157.44 28.24 135 19 MET A 3 ? ? 58.06 -176.98 136 19 ALA A 4 ? ? 65.79 115.34 137 19 PRO A 34 ? ? -69.76 -170.29 138 19 ASP A 40 ? ? -176.33 144.30 139 19 ASP A 61 ? ? -95.32 34.39 140 19 ASP A 68 ? ? -93.64 32.03 141 19 SER A 71 ? ? 69.72 -75.33 142 19 ASP A 72 ? ? -159.00 24.34 143 20 ALA A 4 ? ? -170.55 98.74 144 20 PRO A 34 ? ? -69.68 -170.53 145 20 ASP A 40 ? ? -177.97 149.48 146 20 ASP A 61 ? ? -95.30 33.18 147 20 ASP A 68 ? ? -94.61 32.42 148 20 SER A 71 ? ? 72.87 -68.68 149 20 ASP A 72 ? ? -168.81 30.65 # loop_ _pdbx_audit_support.country _pdbx_audit_support.funding_organization _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal Denmark 'Carlsberg Foundation' CF17-0800 1 Denmark 'Carlsberg Foundation' 2013_01_0566 2 Denmark 'Independent research fund' 6110-00600A 3 # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'gel filtration' _pdbx_struct_assembly_auth_evidence.details ? #