HEADER ANTITUMOR PROTEIN 28-NOV-19 6TKT TITLE STRUCTURE OF THE BACTERIAL TOXIN PHENOMYCIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: PRE-PHENOMYCIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES ROSEOVERTICILLATUS; SOURCE 3 ORGANISM_TAXID: 66429; SOURCE 4 GENE: PHM; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS PROTEIN, ANTITUMOR PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR J.T.NIELSEN,F.A.A.MULDER,T.TOERRING,T.POULSEN REVDAT 4 14-JUN-23 6TKT 1 REMARK REVDAT 3 13-MAY-20 6TKT 1 JRNL REVDAT 2 22-APR-20 6TKT 1 JRNL REVDAT 1 22-JAN-20 6TKT 0 JRNL AUTH B.K.HANSEN,C.K.LARSEN,J.T.NIELSEN,E.B.SVENNINGSEN,L.B.VAN, JRNL AUTH 2 K.M.JACOBSEN,M.BJERRING,R.K.FLYGAARD,L.B.JENNER,L.N.NEJSUM, JRNL AUTH 3 D.E.BRODERSEN,F.A.A.MULDER,T.TORRING,T.B.POULSEN JRNL TITL STRUCTURE AND FUNCTION OF THE BACTERIAL PROTEIN TOXIN JRNL TITL 2 PHENOMYCIN. JRNL REF STRUCTURE V. 28 528 2020 JRNL REFN ISSN 0969-2126 JRNL PMID 32220302 JRNL DOI 10.1016/J.STR.2020.03.003 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 3.98 REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6TKT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 29-NOV-19. REMARK 100 THE DEPOSITION ID IS D_1292105436. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 3.25 REMARK 210 IONIC STRENGTH : 10 REMARK 210 PRESSURE : AMBIENT ATM REMARK 210 SAMPLE CONTENTS : 1 MM [U-100% 13C; U-100% 15N] REMARK 210 PHENOMYCIN, 10 MM POTASSIUM REMARK 210 PHOSPHATE, 95% H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D HNCACB; 3D HNCO; 3D HBHA(CO) REMARK 210 NH; 3D H(CCO)NH; 3D C(CO)NH; 3D REMARK 210 HCCH-TOCSY; 3D HN(CA)CO; 3D 1H- REMARK 210 15N NOESY; 3D 1H-13C NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 950 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : SPARKY 3.98, TOPSPIN REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 1000 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6040 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ALA A 4 134.66 -178.19 REMARK 500 1 PRO A 34 -170.58 -69.74 REMARK 500 1 ASP A 40 145.40 -178.56 REMARK 500 1 ASP A 61 34.64 -94.29 REMARK 500 1 ASP A 68 32.81 -93.40 REMARK 500 1 SER A 71 -75.32 69.75 REMARK 500 1 ASP A 72 27.00 -159.49 REMARK 500 1 ASP A 91 33.52 -147.12 REMARK 500 1 THR A 92 35.39 -161.96 REMARK 500 2 ALA A 4 106.34 -171.94 REMARK 500 2 PRO A 34 -170.56 -69.77 REMARK 500 2 ASP A 40 144.72 -176.56 REMARK 500 2 ASP A 61 34.49 -95.00 REMARK 500 2 ASP A 68 32.35 -93.37 REMARK 500 2 SER A 71 -74.53 70.04 REMARK 500 2 ASP A 72 25.41 -160.98 REMARK 500 3 PRO A 6 -175.16 -69.73 REMARK 500 3 PRO A 34 -170.46 -69.79 REMARK 500 3 ASP A 40 148.64 -177.74 REMARK 500 3 ASP A 61 32.26 -93.94 REMARK 500 3 ASP A 68 31.75 -93.56 REMARK 500 3 SER A 71 -74.31 70.26 REMARK 500 3 ASP A 72 31.00 -161.22 REMARK 500 4 ALA A 4 99.02 -168.47 REMARK 500 4 PRO A 34 -170.49 -69.79 REMARK 500 4 ASP A 40 145.40 -174.20 REMARK 500 4 ASP A 61 32.67 -94.80 REMARK 500 4 ASP A 68 31.97 -93.73 REMARK 500 4 SER A 71 -75.00 69.79 REMARK 500 4 ASP A 72 30.61 -159.14 REMARK 500 5 ALA A 4 108.35 64.19 REMARK 500 5 PRO A 34 -170.59 -69.79 REMARK 500 5 ASP A 40 144.91 -179.09 REMARK 500 5 ASP A 61 34.62 -95.20 REMARK 500 5 ASP A 68 32.81 -93.46 REMARK 500 5 SER A 71 -75.28 69.82 REMARK 500 5 ASP A 72 26.85 -159.23 REMARK 500 6 ALA A 2 81.70 54.65 REMARK 500 6 ALA A 4 112.65 -171.14 REMARK 500 6 PRO A 34 -170.72 -69.76 REMARK 500 6 ASP A 40 139.50 -178.96 REMARK 500 6 ASP A 61 33.02 -95.65 REMARK 500 6 ASP A 68 32.73 -93.46 REMARK 500 6 SER A 71 -75.70 69.53 REMARK 500 6 ASP A 72 26.13 -154.92 REMARK 500 7 ALA A 4 107.85 -175.87 REMARK 500 7 PRO A 34 -170.62 -69.80 REMARK 500 7 ASP A 40 142.14 -178.64 REMARK 500 7 ASP A 61 33.61 -92.95 REMARK 500 7 ASP A 68 33.02 -93.71 REMARK 500 REMARK 500 THIS ENTRY HAS 149 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 50088 RELATED DB: BMRB DBREF 6TKT A 5 93 UNP Q53805 Q53805_9ACTN 46 134 SEQADV 6TKT GLY A 1 UNP Q53805 EXPRESSION TAG SEQADV 6TKT ALA A 2 UNP Q53805 EXPRESSION TAG SEQADV 6TKT MET A 3 UNP Q53805 EXPRESSION TAG SEQADV 6TKT ALA A 4 UNP Q53805 EXPRESSION TAG SEQRES 1 A 93 GLY ALA MET ALA ASN PRO LYS THR ILE LYS ALA ALA ALA SEQRES 2 A 93 TYR ASN GLN ALA ARG SER THR LEU ALA ASP ALA GLY SER SEQRES 3 A 93 ARG THR ALA ALA LYS SER HIS PRO ILE HIS GLY LYS THR SEQRES 4 A 93 ASP VAL PRO VAL SER TYR GLY THR SER LEU LEU ALA ALA SEQRES 5 A 93 ALA ARG ASP GLU PHE ARG GLN ALA ASP LYS LYS LEU PRO SEQRES 6 A 93 ALA LYS ASP LYS LYS SER ASP MET SER ILE ALA HIS TYR SEQRES 7 A 93 ASN ALA VAL HIS SER ALA ALA LYS THR MET GLY ILE ASP SEQRES 8 A 93 THR TRP HELIX 1 AA1 LYS A 10 ASP A 23 1 14 HELIX 2 AA2 VAL A 43 ASP A 61 1 19 HELIX 3 AA3 SER A 74 GLY A 89 1 16 SHEET 1 AA1 2 THR A 8 ILE A 9 0 SHEET 2 AA1 2 VAL A 41 PRO A 42 -1 O VAL A 41 N ILE A 9 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1