HEADER HYDROLASE 29-NOV-19 6TKU TITLE CRYSTAL STRUCTURE OF A CAPSULE-SPECIFIC DEPOLYMERASE PRODUCED BY TITLE 2 KLEBSIELLA PHAGE COMPND MOL_ID: 1; COMPND 2 MOLECULE: DEPOLYMERASE KP32GP38; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: KLEBSIELLA PHAGE KP32; SOURCE 3 ORGANISM_TAXID: 674082; SOURCE 4 GENE: 38; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS KLEBSIELLA PNEUMONIAE CAPSULE, PHAGE DEPOLYMERASE, TAIL FIBER KEYWDS 2 BRANCHING SYSTEM, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR R.BERISIO,F.SQUEGLIA REVDAT 3 10-JUN-20 6TKU 1 JRNL REVDAT 2 20-MAY-20 6TKU 1 JRNL REVDAT 1 22-APR-20 6TKU 0 JRNL AUTH F.SQUEGLIA,B.MACIEJEWSKA,A.LATKA,A.RUGGIERO,Y.BRIERS, JRNL AUTH 2 Z.DRULIS-KAWA,R.BERISIO JRNL TITL STRUCTURAL AND FUNCTIONAL STUDIES OF A KLEBSIELLA PHAGE JRNL TITL 2 CAPSULE DEPOLYMERASE TAILSPIKE: MECHANISTIC INSIGHTS INTO JRNL TITL 3 CAPSULAR DEGRADATION. JRNL REF STRUCTURE V. 28 613 2020 JRNL REFN ISSN 0969-2126 JRNL PMID 32386574 JRNL DOI 10.1016/J.STR.2020.04.015 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0257 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 14.91 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 55417 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.207 REMARK 3 R VALUE (WORKING SET) : 0.205 REMARK 3 FREE R VALUE : 0.251 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2939 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3958 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.81 REMARK 3 BIN R VALUE (WORKING SET) : 0.3050 REMARK 3 BIN FREE R VALUE SET COUNT : 204 REMARK 3 BIN FREE R VALUE : 0.3310 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4063 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 444 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.19 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : -0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.132 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.132 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.107 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.575 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.959 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.933 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4211 ; 0.009 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 3864 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5734 ; 1.686 ; 1.642 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8954 ; 1.257 ; 1.572 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 567 ; 0.067 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4852 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 888 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES REMARK 4 REMARK 4 6TKU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 29-NOV-19. REMARK 100 THE DEPOSITION ID IS D_1292105624. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-MAY-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ELETTRA REMARK 200 BEAMLINE : 5.2R REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97590 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 59968 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 13.60 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.84 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.23200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.07 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.46 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M AMMONIUM CITRATE TRIBASIC PH 7.0 REMARK 280 AND 20% W/V POLYETHYLENE GLYCOL 3,350., VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 3 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 18210 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 51290 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -42.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 71.72600 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 35.86300 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 62.11654 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 914 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 937 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 943 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 959 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1029 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1043 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 1 REMARK 465 LEU A 2 REMARK 465 ASP A 3 REMARK 465 ASN A 4 REMARK 465 PHE A 5 REMARK 465 ASN A 6 REMARK 465 GLN A 7 REMARK 465 PRO A 8 REMARK 465 LYS A 9 REMARK 465 GLY A 10 REMARK 465 SER A 11 REMARK 465 THR A 12 REMARK 465 ILE A 13 REMARK 465 GLY A 14 REMARK 465 VAL A 15 REMARK 465 LEU A 16 REMARK 465 LYS A 17 REMARK 465 ASP A 18 REMARK 465 GLY A 19 REMARK 465 ARG A 20 REMARK 465 THR A 21 REMARK 465 ILE A 22 REMARK 465 GLN A 23 REMARK 465 GLU A 24 REMARK 465 ALA A 25 REMARK 465 PHE A 26 REMARK 465 ASP A 27 REMARK 465 SER A 28 REMARK 465 LEU A 29 REMARK 465 PRO A 30 REMARK 465 ARG A 31 REMARK 465 LEU A 32 REMARK 465 GLU A 33 REMARK 465 HIS A 579 REMARK 465 HIS A 580 REMARK 465 HIS A 581 REMARK 465 HIS A 582 REMARK 465 HIS A 583 REMARK 465 HIS A 584 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 36 CB OG REMARK 470 SER A 38 CB OG REMARK 470 VAL A 55 CB CG1 CG2 REMARK 470 ARG A 66 CG CD NE CZ NH1 NH2 REMARK 470 TYR A 77 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 CYS A 84 CB SG REMARK 470 LYS A 93 CG CD CE NZ REMARK 470 ARG A 117 CG CD NE CZ NH1 NH2 REMARK 470 ALA A 135 CB REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 665 O HOH A 1008 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 72 54.23 27.17 REMARK 500 PRO A 78 84.06 -62.21 REMARK 500 LYS A 93 36.40 -161.87 REMARK 500 ASN A 125 43.41 73.02 REMARK 500 LEU A 136 -153.43 -91.72 REMARK 500 CYS A 153 -168.18 -110.63 REMARK 500 ASN A 157 81.63 49.51 REMARK 500 MSE A 158 149.01 -177.15 REMARK 500 PRO A 184 -33.59 -37.42 REMARK 500 SER A 196 -75.27 -142.32 REMARK 500 ASN A 225 27.19 -142.11 REMARK 500 PHE A 240 -70.38 -41.05 REMARK 500 ASP A 241 -50.67 75.27 REMARK 500 LEU A 260 123.65 -177.91 REMARK 500 SER A 261 -124.23 -96.90 REMARK 500 ASN A 278 36.07 72.00 REMARK 500 LEU A 341 123.29 -38.35 REMARK 500 THR A 390 -4.45 62.58 REMARK 500 VAL A 401 -73.40 -70.96 REMARK 500 LYS A 411 57.89 -91.09 REMARK 500 GLN A 464 -140.42 -122.58 REMARK 500 GLN A 464 -134.54 -128.47 REMARK 500 ASP A 480 -72.74 -83.42 REMARK 500 ALA A 497 64.10 -151.35 REMARK 500 ASP A 531 32.78 -91.39 REMARK 500 SER A 576 -105.55 -120.40 REMARK 500 LYS A 577 -133.86 -133.30 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1043 DISTANCE = 6.76 ANGSTROMS REMARK 525 HOH A1044 DISTANCE = 7.05 ANGSTROMS DBREF 6TKU A 1 576 UNP D1L2X1 D1L2X1_9CAUD 1 576 SEQADV 6TKU LYS A 577 UNP D1L2X1 EXPRESSION TAG SEQADV 6TKU GLY A 578 UNP D1L2X1 EXPRESSION TAG SEQADV 6TKU HIS A 579 UNP D1L2X1 EXPRESSION TAG SEQADV 6TKU HIS A 580 UNP D1L2X1 EXPRESSION TAG SEQADV 6TKU HIS A 581 UNP D1L2X1 EXPRESSION TAG SEQADV 6TKU HIS A 582 UNP D1L2X1 EXPRESSION TAG SEQADV 6TKU HIS A 583 UNP D1L2X1 EXPRESSION TAG SEQADV 6TKU HIS A 584 UNP D1L2X1 EXPRESSION TAG SEQRES 1 A 584 MSE LEU ASP ASN PHE ASN GLN PRO LYS GLY SER THR ILE SEQRES 2 A 584 GLY VAL LEU LYS ASP GLY ARG THR ILE GLN GLU ALA PHE SEQRES 3 A 584 ASP SER LEU PRO ARG LEU GLU SER PHE SER GLY SER THR SEQRES 4 A 584 ALA THR ASP LYS LEU ARG ALA ALA ILE THR LEU GLY VAL SEQRES 5 A 584 SER GLU VAL ALA ILE GLY PRO VAL GLU GLY ASN GLY GLY SEQRES 6 A 584 ARG PRO TYR GLU PHE GLY ASP VAL VAL ILE PRO TYR PRO SEQRES 7 A 584 LEU ARG ILE VAL GLY CYS GLY SER GLN GLY ILE ASN VAL SEQRES 8 A 584 THR LYS GLY THR VAL LEU LYS ARG SER ALA GLY ALA SER SEQRES 9 A 584 PHE MSE PHE HIS PHE THR GLY GLU GLY GLN ALA GLN ARG SEQRES 10 A 584 PRO MSE GLY GLY GLY LEU PHE ASN ILE ASN LEU ASN GLY SEQRES 11 A 584 ASP THR ALA THR ALA LEU GLY ASP ILE ILE LYS VAL THR SEQRES 12 A 584 GLN TRP SER TYR PHE LYS ALA ASN ASN CYS ALA PHE GLN SEQRES 13 A 584 ASN MSE ALA GLY TRP GLY ILE ARG LEU LYS ASP VAL MSE SEQRES 14 A 584 GLU SER ASN ILE SER GLY ASN LEU PHE ARG ARG LEU GLY SEQRES 15 A 584 GLY PRO SER GLY GLY GLY ILE LEU PHE ASP ASP VAL ARG SEQRES 16 A 584 SER ALA VAL THR ASP ASN VAL ASN ASN LEU HIS ILE GLU SEQRES 17 A 584 ASP ASN THR PHE ALA LEU MSE SER GLY PRO TRP ILE GLY SEQRES 18 A 584 SER THR ALA ASN SER ASN PRO ASP LEU ILE TRP ILE VAL SEQRES 19 A 584 ARG ASN LYS PHE GLU PHE ASP GLY THR PRO ALA ALA PRO SEQRES 20 A 584 ASN THR VAL ASP SER TYR VAL LEU ASP PHE GLN GLN LEU SEQRES 21 A 584 SER ARG ALA PHE ILE GLN ASP ASN GLY PHE THR HIS PHE SEQRES 22 A 584 THR THR GLU ARG ASN ARG TYR VAL GLY VAL LEU ARG VAL SEQRES 23 A 584 GLY ALA THR ALA VAL GLY THR ILE LYS PHE GLU ASP ASN SEQRES 24 A 584 LEU LEU PHE ALA CYS GLU SER ALA GLY LEU ILE ALA GLY SEQRES 25 A 584 GLY ILE VAL VAL SER ARG GLY ASN VAL ASN ASN GLN GLY SEQRES 26 A 584 SER ALA THR THR ALA ILE LYS GLN PHE THR ASN THR SER SEQRES 27 A 584 SER LYS LEU CYS LYS LEU GLU ARG VAL ILE ASN VAL GLN SEQRES 28 A 584 SER ASN GLY ASN VAL SER VAL GLY GLN GLN ILE LEU PRO SEQRES 29 A 584 ASP GLY TYR ILE ASN MSE ALA GLU LEU PRO GLY ASN THR SEQRES 30 A 584 ARG LEU PRO SER GLU TYR ASP ALA ASP GLY GLU THR THR SEQRES 31 A 584 SER VAL LEU ARG VAL PRO ALA ASN THR GLN VAL ARG GLN SEQRES 32 A 584 TRP SER VAL PRO LYS MSE TYR LYS ASP GLY LEU THR VAL SEQRES 33 A 584 THR LYS VAL THR VAL ARG ALA LYS GLY ALA ALA ALA GLY SEQRES 34 A 584 ALA ILE LEU SER LEU GLN SER GLY SER THR VAL LEU SER SEQRES 35 A 584 THR LYS SER ILE ASP ALA GLY VAL TRP LYS ASN TYR VAL SEQRES 36 A 584 PHE TYR VAL LYS ALA ASN GLN LEU GLN GLU THR LEU GLN SEQRES 37 A 584 LEU ARG ASN THR GLY THR ALA ASP VAL LEU ALA ASP GLY SEQRES 38 A 584 MSE VAL PHE GLY LYS VAL ASP TYR ILE ASP TRP ASP PHE SEQRES 39 A 584 ALA ILE ALA PRO GLY THR LEU ALA ALA GLY ALA LYS TYR SEQRES 40 A 584 THR THR PRO ASN GLN SER TYR LEU ASP VAL ALA GLY MSE SEQRES 41 A 584 ARG VAL GLN ALA VAL SER ILE PRO MSE PHE ASP GLY PRO SEQRES 42 A 584 THR THR GLY LEU GLN VAL TRP VAL GLU ALA THR SER ALA SEQRES 43 A 584 ASN GLY SER PHE VAL VAL VAL MSE LYS ASN ASP THR GLY SEQRES 44 A 584 SER GLU LEU VAL THR THR VAL THR ARG CYS ARG VAL ARG SEQRES 45 A 584 ALA PHE VAL SER LYS GLY HIS HIS HIS HIS HIS HIS MODRES 6TKU MSE A 106 MET MODIFIED RESIDUE MODRES 6TKU MSE A 119 MET MODIFIED RESIDUE MODRES 6TKU MSE A 158 MET MODIFIED RESIDUE MODRES 6TKU MSE A 169 MET MODIFIED RESIDUE MODRES 6TKU MSE A 215 MET MODIFIED RESIDUE MODRES 6TKU MSE A 370 MET MODIFIED RESIDUE MODRES 6TKU MSE A 409 MET MODIFIED RESIDUE MODRES 6TKU MSE A 482 MET MODIFIED RESIDUE MODRES 6TKU MSE A 520 MET MODIFIED RESIDUE MODRES 6TKU MSE A 529 MET MODIFIED RESIDUE MODRES 6TKU MSE A 554 MET MODIFIED RESIDUE HET MSE A 106 8 HET MSE A 119 8 HET MSE A 158 8 HET MSE A 169 8 HET MSE A 215 8 HET MSE A 370 8 HET MSE A 409 8 HET MSE A 482 8 HET MSE A 520 8 HET MSE A 529 13 HET MSE A 554 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 11(C5 H11 N O2 SE) FORMUL 2 HOH *444(H2 O) HELIX 1 AA1 THR A 39 GLY A 51 1 13 HELIX 2 AA2 ALA A 371 LEU A 373 5 3 HELIX 3 AA3 PRO A 407 LYS A 411 5 5 HELIX 4 AA4 SER A 513 ALA A 518 1 6 SHEET 1 AA112 TYR A 68 PHE A 70 0 SHEET 2 AA112 VAL A 96 ARG A 99 1 O LYS A 98 N PHE A 70 SHEET 3 AA112 ASN A 127 ASN A 129 1 O ASN A 127 N LEU A 97 SHEET 4 AA112 ALA A 154 MSE A 158 1 O ALA A 154 N LEU A 128 SHEET 5 AA112 LEU A 177 LEU A 181 1 O ARG A 179 N PHE A 155 SHEET 6 AA112 THR A 211 ALA A 213 1 O THR A 211 N PHE A 178 SHEET 7 AA112 LYS A 237 GLU A 239 1 O GLU A 239 N PHE A 212 SHEET 8 AA112 GLY A 269 THR A 271 1 O GLY A 269 N PHE A 238 SHEET 9 AA112 LEU A 300 PHE A 302 1 O PHE A 302 N PHE A 270 SHEET 10 AA112 VAL A 321 ASN A 323 1 O ASN A 323 N LEU A 301 SHEET 11 AA112 ILE A 348 VAL A 350 1 O ILE A 348 N ASN A 322 SHEET 12 AA112 VAL A 356 VAL A 358 -1 O SER A 357 N ASN A 349 SHEET 1 AA210 VAL A 73 ILE A 75 0 SHEET 2 AA210 PHE A 107 THR A 110 1 O HIS A 108 N ILE A 75 SHEET 3 AA210 ASP A 138 SER A 146 1 O THR A 143 N PHE A 109 SHEET 4 AA210 TRP A 161 MSE A 169 1 O ARG A 164 N VAL A 142 SHEET 5 AA210 GLY A 187 PHE A 191 1 O LEU A 190 N LEU A 165 SHEET 6 AA210 ILE A 220 SER A 222 1 O GLY A 221 N ILE A 189 SHEET 7 AA210 SER A 252 PHE A 257 1 O ASP A 256 N ILE A 220 SHEET 8 AA210 TYR A 280 VAL A 286 1 O VAL A 283 N LEU A 255 SHEET 9 AA210 GLY A 308 ILE A 310 1 O LEU A 309 N LEU A 284 SHEET 10 AA210 THR A 335 ASN A 336 1 O THR A 335 N ILE A 310 SHEET 1 AA3 3 ARG A 80 ILE A 81 0 SHEET 2 AA3 3 GLY A 122 PHE A 124 1 O GLY A 122 N ILE A 81 SHEET 3 AA3 3 LYS A 149 ASN A 151 1 O ASN A 151 N LEU A 123 SHEET 1 AA4 6 ASN A 203 GLU A 208 0 SHEET 2 AA4 6 ASP A 229 VAL A 234 1 O TRP A 232 N ILE A 207 SHEET 3 AA4 6 ALA A 263 GLN A 266 1 O PHE A 264 N ILE A 233 SHEET 4 AA4 6 GLY A 292 GLU A 297 1 O LYS A 295 N ILE A 265 SHEET 5 AA4 6 ILE A 314 ARG A 318 1 O VAL A 316 N ILE A 294 SHEET 6 AA4 6 CYS A 342 LEU A 344 1 O LYS A 343 N SER A 317 SHEET 1 AA5 4 ILE A 368 ASN A 369 0 SHEET 2 AA5 4 VAL A 477 VAL A 487 -1 O MSE A 482 N ILE A 368 SHEET 3 AA5 4 SER A 391 VAL A 395 -1 N VAL A 395 O VAL A 477 SHEET 4 AA5 4 SER A 381 TYR A 383 -1 N GLU A 382 O VAL A 392 SHEET 1 AA6 4 ILE A 368 ASN A 369 0 SHEET 2 AA6 4 VAL A 477 VAL A 487 -1 O MSE A 482 N ILE A 368 SHEET 3 AA6 4 VAL A 416 GLY A 425 -1 N LYS A 424 O LEU A 478 SHEET 4 AA6 4 LYS A 452 VAL A 458 -1 O VAL A 458 N THR A 417 SHEET 1 AA7 4 THR A 399 SER A 405 0 SHEET 2 AA7 4 THR A 466 ASN A 471 -1 O ASN A 471 N THR A 399 SHEET 3 AA7 4 ILE A 431 SER A 436 -1 N SER A 433 O ARG A 470 SHEET 4 AA7 4 THR A 439 SER A 445 -1 O LEU A 441 N LEU A 434 SHEET 1 AA8 3 TYR A 489 ALA A 495 0 SHEET 2 AA8 3 ARG A 568 PHE A 574 -1 O ALA A 573 N ILE A 490 SHEET 3 AA8 3 ALA A 524 VAL A 525 -1 N ALA A 524 O PHE A 574 SHEET 1 AA9 3 TYR A 489 ALA A 495 0 SHEET 2 AA9 3 ARG A 568 PHE A 574 -1 O ALA A 573 N ILE A 490 SHEET 3 AA9 3 MSE A 529 PHE A 530 -1 N MSE A 529 O ARG A 570 SHEET 1 AB1 2 THR A 500 LEU A 501 0 SHEET 2 AB1 2 LEU A 562 VAL A 563 -1 O LEU A 562 N LEU A 501 SHEET 1 AB2 3 LYS A 506 THR A 508 0 SHEET 2 AB2 3 PHE A 550 ASN A 556 -1 O MSE A 554 N TYR A 507 SHEET 3 AB2 3 LEU A 537 ALA A 543 -1 N GLN A 538 O LYS A 555 LINK C PHE A 105 N MSE A 106 1555 1555 1.33 LINK C MSE A 106 N PHE A 107 1555 1555 1.33 LINK C PRO A 118 N MSE A 119 1555 1555 1.34 LINK C MSE A 119 N GLY A 120 1555 1555 1.34 LINK C ASN A 157 N MSE A 158 1555 1555 1.34 LINK C MSE A 158 N ALA A 159 1555 1555 1.34 LINK C VAL A 168 N MSE A 169 1555 1555 1.33 LINK C MSE A 169 N GLU A 170 1555 1555 1.34 LINK C LEU A 214 N MSE A 215 1555 1555 1.33 LINK C MSE A 215 N SER A 216 1555 1555 1.33 LINK C ASN A 369 N MSE A 370 1555 1555 1.35 LINK C MSE A 370 N ALA A 371 1555 1555 1.34 LINK C LYS A 408 N MSE A 409 1555 1555 1.34 LINK C MSE A 409 N TYR A 410 1555 1555 1.34 LINK C GLY A 481 N MSE A 482 1555 1555 1.34 LINK C MSE A 482 N VAL A 483 1555 1555 1.35 LINK C GLY A 519 N MSE A 520 1555 1555 1.34 LINK C MSE A 520 N ARG A 521 1555 1555 1.34 LINK C PRO A 528 N MSE A 529 1555 1555 1.36 LINK C MSE A 529 N PHE A 530 1555 1555 1.34 LINK C VAL A 553 N MSE A 554 1555 1555 1.34 LINK C MSE A 554 N LYS A 555 1555 1555 1.34 CISPEP 1 GLY A 292 THR A 293 0 0.81 CRYST1 71.726 71.726 208.197 90.00 90.00 120.00 P 3 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013942 0.008049 0.000000 0.00000 SCALE2 0.000000 0.016099 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004803 0.00000