HEADER PLANT PROTEIN 04-DEC-19 6TME TITLE MONOMERIC LRX8 IN COMPLEX WITH RALF4. COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLLEN-SPECIFIC LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN COMPND 3 1; COMPND 4 CHAIN: A, B; COMPND 5 SYNONYM: POLLEN-SPECIFIC LRR/EXTENSIN1,CELL WALL HYDROXYPROLINE-RICH COMPND 6 GLYCOPROTEIN; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: PROTEIN RALF-LIKE 4; COMPND 11 CHAIN: C, D; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: THALE CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 VARIANT: COL-0; SOURCE 6 ORGAN: POLLEN; SOURCE 7 TISSUE: POLLEN; SOURCE 8 CELL: POLLEN; SOURCE 9 GENE: PEX1, AT3G19020, K13E13.23; SOURCE 10 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 11 EXPRESSION_SYSTEM_COMMON: CABBAGE LOOPER; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 7111; SOURCE 13 EXPRESSION_SYSTEM_CELL_LINE: 38; SOURCE 14 EXPRESSION_SYSTEM_CELL: INSECT CELLS; SOURCE 15 EXPRESSION_SYSTEM_VECTOR_TYPE: PFASTBAC; SOURCE 16 EXPRESSION_SYSTEM_PLASMID: PFASTBAC; SOURCE 17 MOL_ID: 2; SOURCE 18 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 19 ORGANISM_COMMON: THALE CRESS; SOURCE 20 ORGANISM_TAXID: 3702; SOURCE 21 VARIANT: COL-0; SOURCE 22 ORGAN: POLLEN; SOURCE 23 TISSUE: POLLEN; SOURCE 24 CELL: POLLEN; SOURCE 25 GENE: RALFL4, AT1G28270, F3H9.8; SOURCE 26 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 27 EXPRESSION_SYSTEM_COMMON: CABBAGE LOOPER; SOURCE 28 EXPRESSION_SYSTEM_TAXID: 7111; SOURCE 29 EXPRESSION_SYSTEM_CELL_LINE: 38; SOURCE 30 EXPRESSION_SYSTEM_VECTOR_TYPE: PFASTBAC; SOURCE 31 EXPRESSION_SYSTEM_PLASMID: PFASTBAC KEYWDS LEUCINE RICH EXTENSIN, PEPTIDE SIGNALING, CELL WALL SIGNALING, LRR, KEYWDS 2 PLANT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.MOUSSU,C.CAROLINE,G.SANTOS-FERNANDEZ,S.WEHRLE,U.GROSSNIKLAUS, AUTHOR 2 J.SANTIAGO REVDAT 10 07-FEB-24 6TME 1 REMARK REVDAT 9 08-MAR-23 6TME 1 TITLE REVDAT 8 07-DEC-22 6TME 1 REMARK ATOM REVDAT 7 04-MAY-22 6TME 1 COMPND REMARK LINK ATOM REVDAT 6 20-APR-22 6TME 1 REMARK ATOM REVDAT 5 11-NOV-20 6TME 1 COMPND REMARK ATOM REVDAT 4 29-JUL-20 6TME 1 COMPND REMARK HETNAM HETSYN REVDAT 4 2 1 LINK SITE ATOM REVDAT 3 08-APR-20 6TME 1 JRNL REVDAT 2 25-MAR-20 6TME 1 JRNL REVDAT 1 18-MAR-20 6TME 0 JRNL AUTH S.MOUSSU,C.BROYART,G.SANTOS-FERNANDEZ,S.AUGUSTIN,S.WEHRLE, JRNL AUTH 2 U.GROSSNIKLAUS,J.SANTIAGO JRNL TITL STRUCTURAL BASIS FOR RECOGNITION OF RALF PEPTIDES BY LRX JRNL TITL 2 PROTEINS DURING POLLEN TUBE GROWTH. JRNL REF PROC.NATL.ACAD.SCI.USA V. 117 7494 2020 JRNL REFN ESSN 1091-6490 JRNL PMID 32165538 JRNL DOI 10.1073/PNAS.2000100117 REMARK 2 REMARK 2 RESOLUTION. 2.33 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.33 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.00 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.960 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.2 REMARK 3 NUMBER OF REFLECTIONS : 40536 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.175 REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.229 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.980 REMARK 3 FREE R VALUE TEST SET COUNT : 2017 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.0000 - 5.6000 0.97 2743 149 0.1845 0.2016 REMARK 3 2 5.6000 - 4.4500 0.97 2734 159 0.1392 0.1773 REMARK 3 3 4.4500 - 3.8900 0.97 2762 148 0.1283 0.1798 REMARK 3 4 3.8900 - 3.5300 0.98 2790 133 0.1479 0.2074 REMARK 3 5 3.5300 - 3.2800 0.99 2806 126 0.1718 0.2338 REMARK 3 6 3.2800 - 3.0900 0.99 2789 169 0.1796 0.2776 REMARK 3 7 3.0900 - 2.9300 0.99 2807 131 0.1861 0.2707 REMARK 3 8 2.9300 - 2.8000 0.98 2788 134 0.1802 0.2656 REMARK 3 9 2.8000 - 2.7000 0.98 2740 148 0.1907 0.2884 REMARK 3 10 2.7000 - 2.6000 0.98 2795 137 0.2092 0.2605 REMARK 3 11 2.6000 - 2.5200 0.98 2775 154 0.2174 0.3124 REMARK 3 12 2.5200 - 2.4500 0.98 2761 132 0.2278 0.3066 REMARK 3 13 2.4500 - 2.3800 0.98 2747 159 0.2281 0.2791 REMARK 3 14 2.3800 - 2.3300 0.88 2482 138 0.2434 0.3266 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.290 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.920 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.57 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 16.6125 8.0625 19.5112 REMARK 3 T TENSOR REMARK 3 T11: 0.1560 T22: 0.1123 REMARK 3 T33: 0.1336 T12: -0.0006 REMARK 3 T13: 0.0128 T23: -0.0093 REMARK 3 L TENSOR REMARK 3 L11: 0.8717 L22: 0.1184 REMARK 3 L33: 0.3773 L12: 0.0534 REMARK 3 L13: 0.2749 L23: 0.1375 REMARK 3 S TENSOR REMARK 3 S11: -0.0619 S12: 0.0564 S13: -0.0027 REMARK 3 S21: -0.0527 S22: 0.0265 S23: 0.0164 REMARK 3 S31: -0.0217 S32: 0.0469 S33: -0.0009 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6TME COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 04-DEC-19. REMARK 100 THE DEPOSITION ID IS D_1292105618. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-AUG-19 REMARK 200 TEMPERATURE (KELVIN) : 80 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000036 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40550 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.330 REMARK 200 RESOLUTION RANGE LOW (A) : 48.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.2 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.13600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.33 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.41 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.90800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6QXP REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.66 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.3 M AMMONIUM SULFATE 20 % W/V PEG REMARK 280 4000, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6340 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16300 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -94.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4340 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15930 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -35.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 29 REMARK 465 GLU A 30 REMARK 465 LEU A 31 REMARK 465 THR A 32 REMARK 465 ASP A 33 REMARK 465 GLU A 34 REMARK 465 GLU A 35 REMARK 465 ALA A 36 REMARK 465 SER A 37 REMARK 465 PHE A 38 REMARK 465 LEU A 39 REMARK 465 THR A 40 REMARK 465 ARG A 41 REMARK 465 ARG A 42 REMARK 465 GLN A 43 REMARK 465 LEU A 44 REMARK 465 LEU A 45 REMARK 465 ALA A 46 REMARK 465 LEU A 47 REMARK 465 SER A 48 REMARK 465 GLU A 49 REMARK 465 ASN A 50 REMARK 465 GLY A 51 REMARK 465 ASP A 52 REMARK 465 LEU A 53 REMARK 465 PRO A 54 REMARK 465 ASP A 55 REMARK 465 ASP A 56 REMARK 465 ILE A 57 REMARK 465 GLU A 58 REMARK 465 TYR A 59 REMARK 465 GLU A 60 REMARK 465 VAL A 61 REMARK 465 ASP A 62 REMARK 465 LEU A 63 REMARK 465 ASP A 64 REMARK 465 LEU A 65 REMARK 465 LYS A 66 REMARK 465 PHE A 67 REMARK 465 ALA A 68 REMARK 465 ASN A 69 REMARK 465 LYS A 394 REMARK 465 ASP A 395 REMARK 465 LYS A 396 REMARK 465 CYS A 397 REMARK 465 ALA A 398 REMARK 465 GLY A 399 REMARK 465 GLY A 400 REMARK 465 MET B 29 REMARK 465 GLU B 30 REMARK 465 LEU B 31 REMARK 465 THR B 32 REMARK 465 ASP B 33 REMARK 465 GLU B 34 REMARK 465 GLU B 35 REMARK 465 ALA B 36 REMARK 465 SER B 37 REMARK 465 PHE B 38 REMARK 465 LEU B 39 REMARK 465 THR B 40 REMARK 465 ARG B 41 REMARK 465 ARG B 42 REMARK 465 GLN B 43 REMARK 465 LEU B 44 REMARK 465 LEU B 45 REMARK 465 ALA B 46 REMARK 465 LEU B 47 REMARK 465 SER B 48 REMARK 465 GLU B 49 REMARK 465 ASN B 50 REMARK 465 GLY B 51 REMARK 465 ASP B 52 REMARK 465 LEU B 53 REMARK 465 PRO B 54 REMARK 465 ASP B 55 REMARK 465 ASP B 56 REMARK 465 ILE B 57 REMARK 465 GLU B 58 REMARK 465 TYR B 59 REMARK 465 GLU B 60 REMARK 465 VAL B 61 REMARK 465 ASP B 62 REMARK 465 LEU B 63 REMARK 465 ASP B 64 REMARK 465 LEU B 65 REMARK 465 LYS B 66 REMARK 465 PHE B 67 REMARK 465 CYS B 392 REMARK 465 SER B 393 REMARK 465 LYS B 394 REMARK 465 ASP B 395 REMARK 465 LYS B 396 REMARK 465 CYS B 397 REMARK 465 ALA B 398 REMARK 465 GLY B 399 REMARK 465 GLY B 400 REMARK 465 ALA C 1058 REMARK 465 ARG C 1059 REMARK 465 GLY C 1060 REMARK 465 ALA D 1058 REMARK 465 ARG D 1059 REMARK 465 GLY D 1060 REMARK 465 ARG D 1107 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 TYR A 87 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 CYS A 157 SG REMARK 470 LYS A 162 CG CD CE NZ REMARK 470 LYS A 256 CD CE NZ REMARK 470 LYS A 262 CD CE NZ REMARK 470 ASP A 391 CG OD1 OD2 REMARK 470 ASN B 69 CG OD1 ND2 REMARK 470 TYR B 87 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS B 162 CG CD CE NZ REMARK 470 LYS B 195 CE NZ REMARK 470 LYS B 237 CD CE NZ REMARK 470 LYS B 256 CG CD CE NZ REMARK 470 LYS B 262 CG CD CE NZ REMARK 470 LYS B 335 CG CD CE NZ REMARK 470 GLN B 351 CG CD OE1 NE2 REMARK 470 GLN B 359 CG CD OE1 NE2 REMARK 470 GLU B 360 CG CD OE1 OE2 REMARK 470 GLN B 371 CG CD OE1 NE2 REMARK 470 GLU B 381 CG CD OE1 OE2 REMARK 470 LEU B 383 CG CD1 CD2 REMARK 470 ARG B 388 CG CD NE CZ NH1 NH2 REMARK 470 LYS C1087 CG CD CE NZ REMARK 470 LYS C1088 CG CD CE NZ REMARK 470 ARG C1090 CG CD NE CZ NH1 NH2 REMARK 470 LYS D1087 CG CD CE NZ REMARK 470 LYS D1088 CG CD CE NZ REMARK 470 ARG D1090 CG CD NE CZ NH1 NH2 REMARK 470 ARG D1096 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG D 1097 O HOH D 1201 1.93 REMARK 500 OD2 ASP C 1067 OH TYR C 1106 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 116 97.83 -169.52 REMARK 500 ASN A 178 -158.07 -130.98 REMARK 500 ASN A 202 -156.34 -126.84 REMARK 500 ASP A 216 59.75 -90.51 REMARK 500 ASN A 225 -156.15 -125.97 REMARK 500 SER A 229 -155.12 57.94 REMARK 500 ASN A 248 -161.68 -125.52 REMARK 500 ASN A 263 -0.15 68.61 REMARK 500 ILE A 270 123.10 -38.37 REMARK 500 ASN A 296 -144.88 -124.51 REMARK 500 ASN A 320 -158.22 -136.71 REMARK 500 ASN A 368 -151.10 -115.71 REMARK 500 CYS A 392 81.02 -67.38 REMARK 500 ASP B 116 92.70 -173.25 REMARK 500 ASN B 178 -154.97 -131.00 REMARK 500 ASN B 202 -156.29 -131.90 REMARK 500 ASN B 225 -149.83 -124.98 REMARK 500 SER B 229 -156.08 65.12 REMARK 500 ASN B 248 -161.98 -129.63 REMARK 500 THR B 257 4.70 -65.82 REMARK 500 ASN B 272 -163.35 -124.40 REMARK 500 LEU B 285 71.49 -112.10 REMARK 500 ASN B 296 -152.13 -122.20 REMARK 500 SER B 337 -38.63 -132.46 REMARK 500 ASN B 344 -143.18 -141.62 REMARK 500 SER B 352 10.15 -66.85 REMARK 500 ASN B 368 -141.51 -118.69 REMARK 500 ARG B 388 78.51 -119.12 REMARK 500 ASP C1085 54.22 -156.32 REMARK 500 ARG C1097 -140.83 -127.95 REMARK 500 ASP D1085 63.98 -156.10 REMARK 500 SER D1100 -61.42 -94.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 703 DISTANCE = 6.23 ANGSTROMS REMARK 525 HOH A 704 DISTANCE = 6.98 ANGSTROMS REMARK 525 HOH B 672 DISTANCE = 6.92 ANGSTROMS REMARK 525 HOH B 673 DISTANCE = 7.17 ANGSTROMS REMARK 525 HOH B 674 DISTANCE = 8.03 ANGSTROMS REMARK 525 HOH B 675 DISTANCE = 7.12 ANGSTROMS REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 NAG A 501 DBREF 6TME A 31 400 UNP Q9LJ64 PLRX1_ARATH 31 400 DBREF 6TME B 31 400 UNP Q9LJ64 PLRX1_ARATH 31 400 DBREF 6TME C 1058 1107 UNP Q9FZA0 RLF4_ARATH 58 107 DBREF 6TME D 1058 1107 UNP Q9FZA0 RLF4_ARATH 58 107 SEQADV 6TME MET A 29 UNP Q9LJ64 INITIATING METHIONINE SEQADV 6TME GLU A 30 UNP Q9LJ64 EXPRESSION TAG SEQADV 6TME PHE A 133 UNP Q9LJ64 ALA 133 CONFLICT SEQADV 6TME MET B 29 UNP Q9LJ64 INITIATING METHIONINE SEQADV 6TME GLU B 30 UNP Q9LJ64 EXPRESSION TAG SEQADV 6TME PHE B 133 UNP Q9LJ64 ALA 133 CONFLICT SEQRES 1 A 372 MET GLU LEU THR ASP GLU GLU ALA SER PHE LEU THR ARG SEQRES 2 A 372 ARG GLN LEU LEU ALA LEU SER GLU ASN GLY ASP LEU PRO SEQRES 3 A 372 ASP ASP ILE GLU TYR GLU VAL ASP LEU ASP LEU LYS PHE SEQRES 4 A 372 ALA ASN ASN ARG LEU LYS ARG ALA TYR ILE ALA LEU GLN SEQRES 5 A 372 ALA TRP LYS LYS ALA PHE TYR SER ASP PRO PHE ASN THR SEQRES 6 A 372 ALA ALA ASN TRP VAL GLY PRO ASP VAL CYS SER TYR LYS SEQRES 7 A 372 GLY VAL PHE CYS ALA PRO ALA LEU ASP ASP PRO SER VAL SEQRES 8 A 372 LEU VAL VAL ALA GLY ILE ASP LEU ASN HIS ALA ASP ILE SEQRES 9 A 372 PHE GLY TYR LEU PRO PRO GLU LEU GLY LEU LEU THR ASP SEQRES 10 A 372 VAL ALA LEU PHE HIS VAL ASN SER ASN ARG PHE CYS GLY SEQRES 11 A 372 VAL ILE PRO LYS SER LEU SER LYS LEU THR LEU MET TYR SEQRES 12 A 372 GLU PHE ASP VAL SER ASN ASN ARG PHE VAL GLY PRO PHE SEQRES 13 A 372 PRO THR VAL ALA LEU SER TRP PRO SER LEU LYS PHE LEU SEQRES 14 A 372 ASP ILE ARG TYR ASN ASP PHE GLU GLY LYS LEU PRO PRO SEQRES 15 A 372 GLU ILE PHE ASP LYS ASP LEU ASP ALA ILE PHE LEU ASN SEQRES 16 A 372 ASN ASN ARG PHE GLU SER THR ILE PRO GLU THR ILE GLY SEQRES 17 A 372 LYS SER THR ALA SER VAL VAL THR PHE ALA HIS ASN LYS SEQRES 18 A 372 PHE SER GLY CYS ILE PRO LYS THR ILE GLY GLN MET LYS SEQRES 19 A 372 ASN LEU ASN GLU ILE VAL PHE ILE GLY ASN ASN LEU SER SEQRES 20 A 372 GLY CYS LEU PRO ASN GLU ILE GLY SER LEU ASN ASN VAL SEQRES 21 A 372 THR VAL PHE ASP ALA SER SER ASN GLY PHE VAL GLY SER SEQRES 22 A 372 LEU PRO SER THR LEU SER GLY LEU ALA ASN VAL GLU GLN SEQRES 23 A 372 MET ASP PHE SER TYR ASN LYS PHE THR GLY PHE VAL THR SEQRES 24 A 372 ASP ASN ILE CYS LYS LEU PRO LYS LEU SER ASN PHE THR SEQRES 25 A 372 PHE SER TYR ASN PHE PHE ASN GLY GLU ALA GLN SER CYS SEQRES 26 A 372 VAL PRO GLY SER SER GLN GLU LYS GLN PHE ASP ASP THR SEQRES 27 A 372 SER ASN CYS LEU GLN ASN ARG PRO ASN GLN LYS SER ALA SEQRES 28 A 372 LYS GLU CYS LEU PRO VAL VAL SER ARG PRO VAL ASP CYS SEQRES 29 A 372 SER LYS ASP LYS CYS ALA GLY GLY SEQRES 1 B 372 MET GLU LEU THR ASP GLU GLU ALA SER PHE LEU THR ARG SEQRES 2 B 372 ARG GLN LEU LEU ALA LEU SER GLU ASN GLY ASP LEU PRO SEQRES 3 B 372 ASP ASP ILE GLU TYR GLU VAL ASP LEU ASP LEU LYS PHE SEQRES 4 B 372 ALA ASN ASN ARG LEU LYS ARG ALA TYR ILE ALA LEU GLN SEQRES 5 B 372 ALA TRP LYS LYS ALA PHE TYR SER ASP PRO PHE ASN THR SEQRES 6 B 372 ALA ALA ASN TRP VAL GLY PRO ASP VAL CYS SER TYR LYS SEQRES 7 B 372 GLY VAL PHE CYS ALA PRO ALA LEU ASP ASP PRO SER VAL SEQRES 8 B 372 LEU VAL VAL ALA GLY ILE ASP LEU ASN HIS ALA ASP ILE SEQRES 9 B 372 PHE GLY TYR LEU PRO PRO GLU LEU GLY LEU LEU THR ASP SEQRES 10 B 372 VAL ALA LEU PHE HIS VAL ASN SER ASN ARG PHE CYS GLY SEQRES 11 B 372 VAL ILE PRO LYS SER LEU SER LYS LEU THR LEU MET TYR SEQRES 12 B 372 GLU PHE ASP VAL SER ASN ASN ARG PHE VAL GLY PRO PHE SEQRES 13 B 372 PRO THR VAL ALA LEU SER TRP PRO SER LEU LYS PHE LEU SEQRES 14 B 372 ASP ILE ARG TYR ASN ASP PHE GLU GLY LYS LEU PRO PRO SEQRES 15 B 372 GLU ILE PHE ASP LYS ASP LEU ASP ALA ILE PHE LEU ASN SEQRES 16 B 372 ASN ASN ARG PHE GLU SER THR ILE PRO GLU THR ILE GLY SEQRES 17 B 372 LYS SER THR ALA SER VAL VAL THR PHE ALA HIS ASN LYS SEQRES 18 B 372 PHE SER GLY CYS ILE PRO LYS THR ILE GLY GLN MET LYS SEQRES 19 B 372 ASN LEU ASN GLU ILE VAL PHE ILE GLY ASN ASN LEU SER SEQRES 20 B 372 GLY CYS LEU PRO ASN GLU ILE GLY SER LEU ASN ASN VAL SEQRES 21 B 372 THR VAL PHE ASP ALA SER SER ASN GLY PHE VAL GLY SER SEQRES 22 B 372 LEU PRO SER THR LEU SER GLY LEU ALA ASN VAL GLU GLN SEQRES 23 B 372 MET ASP PHE SER TYR ASN LYS PHE THR GLY PHE VAL THR SEQRES 24 B 372 ASP ASN ILE CYS LYS LEU PRO LYS LEU SER ASN PHE THR SEQRES 25 B 372 PHE SER TYR ASN PHE PHE ASN GLY GLU ALA GLN SER CYS SEQRES 26 B 372 VAL PRO GLY SER SER GLN GLU LYS GLN PHE ASP ASP THR SEQRES 27 B 372 SER ASN CYS LEU GLN ASN ARG PRO ASN GLN LYS SER ALA SEQRES 28 B 372 LYS GLU CYS LEU PRO VAL VAL SER ARG PRO VAL ASP CYS SEQRES 29 B 372 SER LYS ASP LYS CYS ALA GLY GLY SEQRES 1 C 50 ALA ARG GLY ARG ARG TYR ILE GLY TYR ASP ALA LEU LYS SEQRES 2 C 50 LYS ASN ASN VAL PRO CYS SER ARG ARG GLY ARG SER TYR SEQRES 3 C 50 TYR ASP CYS LYS LYS ARG ARG ARG ASN ASN PRO TYR ARG SEQRES 4 C 50 ARG GLY CYS SER ALA ILE THR HIS CYS TYR ARG SEQRES 1 D 50 ALA ARG GLY ARG ARG TYR ILE GLY TYR ASP ALA LEU LYS SEQRES 2 D 50 LYS ASN ASN VAL PRO CYS SER ARG ARG GLY ARG SER TYR SEQRES 3 D 50 TYR ASP CYS LYS LYS ARG ARG ARG ASN ASN PRO TYR ARG SEQRES 4 D 50 ARG GLY CYS SER ALA ILE THR HIS CYS TYR ARG HET NAG E 1 14 HET NAG E 2 14 HET NAG F 1 14 HET NAG F 2 14 HET NAG A 501 13 HET SO4 A 502 5 HET SO4 A 503 5 HET SO4 A 504 5 HET SO4 A 505 5 HET SO4 A 506 5 HET SO4 A 507 5 HET SO4 A 508 5 HET SO4 A 509 5 HET SO4 A 510 5 HET SO4 A 511 5 HET GOL A 512 6 HET GOL A 513 6 HET EDO A 514 4 HET EDO A 515 4 HET NAG B 501 14 HET SO4 B 502 5 HET SO4 B 503 5 HET GOL B 504 6 HET GOL C1201 6 HET EDO C1202 4 HET EDO C1203 4 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETNAM EDO 1,2-ETHANEDIOL HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 5 NAG 6(C8 H15 N O6) FORMUL 8 SO4 12(O4 S 2-) FORMUL 18 GOL 4(C3 H8 O3) FORMUL 20 EDO 4(C2 H6 O2) FORMUL 29 HOH *196(H2 O) HELIX 1 AA1 ASN A 70 ALA A 85 1 16 HELIX 2 AA2 ASP A 101 TYR A 105 5 5 HELIX 3 AA3 PRO A 137 LEU A 143 5 7 HELIX 4 AA4 PRO A 161 LEU A 167 5 7 HELIX 5 AA5 PRO A 185 TRP A 191 5 7 HELIX 6 AA6 PRO A 209 LYS A 215 5 7 HELIX 7 AA7 PRO A 232 SER A 238 5 7 HELIX 8 AA8 PRO A 255 MET A 261 5 7 HELIX 9 AA9 PRO A 279 LEU A 285 5 7 HELIX 10 AB1 PRO A 303 LEU A 309 5 7 HELIX 11 AB2 THR A 327 LYS A 332 1 6 HELIX 12 AB3 GLN A 351 VAL A 354 5 4 HELIX 13 AB4 SER A 378 SER A 387 1 10 HELIX 14 AB5 ASN B 70 ALA B 85 1 16 HELIX 15 AB6 ASP B 101 TYR B 105 5 5 HELIX 16 AB7 PRO B 137 LEU B 143 5 7 HELIX 17 AB8 PRO B 161 LEU B 167 5 7 HELIX 18 AB9 PRO B 185 TRP B 191 5 7 HELIX 19 AC1 PRO B 210 LYS B 215 1 6 HELIX 20 AC2 PRO B 232 SER B 238 5 7 HELIX 21 AC3 PRO B 255 MET B 261 5 7 HELIX 22 AC4 PRO B 279 LEU B 285 5 7 HELIX 23 AC5 PRO B 303 LEU B 309 5 7 HELIX 24 AC6 GLN B 351 VAL B 354 5 4 HELIX 25 AC7 SER B 378 ARG B 388 1 11 HELIX 26 AC8 TYR C 1063 ALA C 1068 1 6 HELIX 27 AC9 ALA C 1101 ARG C 1107 1 7 HELIX 28 AD1 TYR D 1063 ALA D 1068 1 6 HELIX 29 AD2 ALA D 1101 TYR D 1106 1 6 SHEET 1 AA112 VAL A 108 ALA A 113 0 SHEET 2 AA112 ASP A 116 ASP A 126 -1 O GLY A 124 N PHE A 109 SHEET 3 AA112 LEU A 148 HIS A 150 1 O HIS A 150 N ILE A 125 SHEET 4 AA112 GLU A 172 ASP A 174 1 O ASP A 174 N PHE A 149 SHEET 5 AA112 PHE A 196 ASP A 198 1 O PHE A 196 N PHE A 173 SHEET 6 AA112 ALA A 219 PHE A 221 1 O PHE A 221 N LEU A 197 SHEET 7 AA112 VAL A 242 THR A 244 1 O THR A 244 N ILE A 220 SHEET 8 AA112 GLU A 266 VAL A 268 1 O GLU A 266 N VAL A 243 SHEET 9 AA112 VAL A 290 ASP A 292 1 O VAL A 290 N ILE A 267 SHEET 10 AA112 GLN A 314 ASP A 316 1 O GLN A 314 N PHE A 291 SHEET 11 AA112 ASN A 338 THR A 340 1 O ASN A 338 N MET A 315 SHEET 12 AA112 GLN A 362 ASP A 364 1 O GLN A 362 N PHE A 339 SHEET 1 AA2 8 PHE A 133 GLY A 134 0 SHEET 2 AA2 8 ARG A 155 GLY A 158 1 O CYS A 157 N GLY A 134 SHEET 3 AA2 8 ARG A 179 PRO A 183 1 O ARG A 179 N PHE A 156 SHEET 4 AA2 8 ASP A 203 GLY A 206 1 O ASP A 203 N PHE A 180 SHEET 5 AA2 8 ARG A 226 SER A 229 1 O ARG A 226 N PHE A 204 SHEET 6 AA2 8 LYS A 249 GLY A 252 1 O LYS A 249 N PHE A 227 SHEET 7 AA2 8 ASN A 273 CYS A 277 1 O ASN A 273 N PHE A 250 SHEET 8 AA2 8 GLY A 297 VAL A 299 1 O VAL A 299 N GLY A 276 SHEET 1 AA3 2 THR A 323 VAL A 326 0 SHEET 2 AA3 2 PHE A 345 GLU A 349 1 O GLY A 348 N VAL A 326 SHEET 1 AA412 VAL B 108 ALA B 113 0 SHEET 2 AA412 ASP B 116 ASP B 126 -1 O GLY B 124 N PHE B 109 SHEET 3 AA412 LEU B 148 HIS B 150 1 O HIS B 150 N ILE B 125 SHEET 4 AA412 GLU B 172 ASP B 174 1 O ASP B 174 N PHE B 149 SHEET 5 AA412 PHE B 196 ASP B 198 1 O ASP B 198 N PHE B 173 SHEET 6 AA412 ALA B 219 PHE B 221 1 O ALA B 219 N LEU B 197 SHEET 7 AA412 VAL B 242 THR B 244 1 O THR B 244 N ILE B 220 SHEET 8 AA412 GLU B 266 VAL B 268 1 O GLU B 266 N VAL B 243 SHEET 9 AA412 VAL B 290 ASP B 292 1 O VAL B 290 N ILE B 267 SHEET 10 AA412 GLN B 314 ASP B 316 1 O GLN B 314 N PHE B 291 SHEET 11 AA412 ASN B 338 THR B 340 1 O THR B 340 N MET B 315 SHEET 12 AA412 GLN B 362 ASP B 364 1 O GLN B 362 N PHE B 339 SHEET 1 AA5 5 PHE B 133 GLY B 134 0 SHEET 2 AA5 5 ARG B 155 GLY B 158 1 O CYS B 157 N GLY B 134 SHEET 3 AA5 5 ARG B 179 PRO B 183 1 O ARG B 179 N PHE B 156 SHEET 4 AA5 5 ASP B 203 GLY B 206 1 O ASP B 203 N PHE B 180 SHEET 5 AA5 5 ARG B 226 PHE B 227 1 O ARG B 226 N PHE B 204 SHEET 1 AA6 5 SER B 251 GLY B 252 0 SHEET 2 AA6 5 ASN B 273 CYS B 277 1 O SER B 275 N GLY B 252 SHEET 3 AA6 5 GLY B 297 GLY B 300 1 O GLY B 297 N LEU B 274 SHEET 4 AA6 5 LYS B 321 VAL B 326 1 O LYS B 321 N PHE B 298 SHEET 5 AA6 5 PHE B 345 GLU B 349 1 O PHE B 345 N PHE B 322 SSBOND 1 CYS A 103 CYS A 110 1555 1555 2.10 SSBOND 2 CYS A 277 CYS A 392 1555 1555 2.04 SSBOND 3 CYS A 331 CYS A 353 1555 1555 2.07 SSBOND 4 CYS A 369 CYS A 382 1555 1555 2.06 SSBOND 5 CYS B 103 CYS B 110 1555 1555 2.10 SSBOND 6 CYS B 331 CYS B 353 1555 1555 2.04 SSBOND 7 CYS B 369 CYS B 382 1555 1555 1.99 SSBOND 8 CYS C 1076 CYS C 1086 1555 1555 2.06 SSBOND 9 CYS C 1099 CYS C 1105 1555 1555 2.04 SSBOND 10 CYS D 1076 CYS D 1086 1555 1555 2.03 SSBOND 11 CYS D 1099 CYS D 1105 1555 1555 2.04 LINK ND2 ASN A 287 C1 NAG A 501 1555 1555 1.44 LINK ND2 ASN A 338 C1 NAG E 1 1555 1555 1.45 LINK ND2 ASN B 287 C1 NAG B 501 1555 1555 1.46 LINK ND2 ASN B 338 C1 NAG F 1 1555 1555 1.45 LINK O4 NAG E 1 C3 NAG E 2 1555 1555 1.38 LINK O4 NAG F 1 C3 NAG F 2 1555 1555 1.38 CRYST1 51.806 65.542 83.700 72.12 87.62 68.36 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019303 -0.007658 0.001688 0.00000 SCALE2 0.000000 0.016414 -0.005431 0.00000 SCALE3 0.000000 0.000000 0.012595 0.00000