HEADER TRANSCRIPTION 11-DEC-19 6TO6 TITLE SOLUTION STRUCTURE OF THE MODULATOR OF REPRESSION (MOR) OF THE TITLE 2 TEMPERATE BACTERIOPHAGE TP901-1 FROM LACTOCOCCUS LACTIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: MOR; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LACTOCOCCUS PHAGE TP901-1; SOURCE 3 ORGANISM_TAXID: 35345; SOURCE 4 GENE: MOR; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS MODULATOR OF REPRESSION, TRANSCRIPTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR K.K.RASMUSSEN,M.BLACKLEDGE,T.HERRMANN,L.LO LEGGIO,M.R.JENSEN REVDAT 4 14-JUN-23 6TO6 1 REMARK REVDAT 3 02-SEP-20 6TO6 1 JRNL REVDAT 2 26-AUG-20 6TO6 1 JRNL REVDAT 1 19-AUG-20 6TO6 0 JRNL AUTH K.K.RASMUSSEN,A.PALENCIA,A.K.VARMING,H.EL-WALI,E.BOERI ERBA, JRNL AUTH 2 M.BLACKLEDGE,K.HAMMER,T.HERRMANN,M.KILSTRUP,L.LO LEGGIO, JRNL AUTH 3 M.R.JENSEN JRNL TITL REVEALING THE MECHANISM OF REPRESSOR INACTIVATION DURING JRNL TITL 2 SWITCHING OF A TEMPERATE BACTERIOPHAGE. JRNL REF PROC.NATL.ACAD.SCI.USA V. 117 20576 2020 JRNL REFN ESSN 1091-6490 JRNL PMID 32788352 JRNL DOI 10.1073/PNAS.2005218117 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6TO6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 11-DEC-19. REMARK 100 THE DEPOSITION ID IS D_1292105673. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 100 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 700 UM [U-13C; U-15N] MOR, 90% REMARK 210 H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : HCCH-TOCSY; [1H-1H] NOESY-15N REMARK 210 -HSQC; ALIPHATIC [1H-1H]-NOESY- REMARK 210 13C-HSQC; AROMATIC [1H-1H]-NOESY- REMARK 210 13C-HSQC; HNCO; HN(CA)CO; HN(CO) REMARK 210 CACB; HNCACB REMARK 210 SPECTROMETER FIELD STRENGTH : 950 MHZ; 700 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE III REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : UNIO, CYANA, CCPNMR ANALYSIS REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 80 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : NULL EMARK: REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 4820 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 46 HZ2 LYS A 50 1.60 REMARK 500 HZ1 LYS A 36 OE1 GLU A 47 1.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 20 VAL A 33 CB VAL A 33 CG2 -0.127 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 2 90.70 69.65 REMARK 500 1 TYR A 3 105.49 65.50 REMARK 500 1 ASN A 38 -75.43 -109.00 REMARK 500 1 ASP A 39 -10.90 -168.22 REMARK 500 1 GLU A 56 72.64 64.34 REMARK 500 1 PHE A 67 -76.44 -108.11 REMARK 500 1 ASN A 68 -68.74 -92.05 REMARK 500 1 LYS A 70 131.26 176.98 REMARK 500 1 VAL A 71 72.13 -151.74 REMARK 500 2 SER A 2 -169.32 70.59 REMARK 500 2 TYR A 5 32.57 -85.41 REMARK 500 2 LEU A 37 49.23 -83.57 REMARK 500 2 ASN A 38 -65.05 -156.17 REMARK 500 2 ASP A 39 -23.48 -164.85 REMARK 500 2 GLU A 56 73.80 56.81 REMARK 500 2 PHE A 67 -62.68 -136.55 REMARK 500 2 ALA A 69 37.05 -83.43 REMARK 500 2 LYS A 70 104.36 51.29 REMARK 500 3 TYR A 3 28.47 -163.96 REMARK 500 3 CYS A 16 -51.67 -120.19 REMARK 500 3 ASP A 39 -14.45 -163.99 REMARK 500 3 GLU A 56 96.18 65.49 REMARK 500 3 TYR A 65 -60.30 -92.85 REMARK 500 3 PHE A 67 -51.80 -162.44 REMARK 500 3 ASN A 68 124.66 60.20 REMARK 500 4 SER A 2 -167.26 57.49 REMARK 500 4 ASP A 4 133.37 65.02 REMARK 500 4 ASP A 39 57.79 76.47 REMARK 500 4 GLU A 56 77.75 61.47 REMARK 500 4 TYR A 65 -70.35 -117.34 REMARK 500 4 ASN A 68 107.97 -47.04 REMARK 500 4 ALA A 69 30.35 -89.53 REMARK 500 5 TYR A 3 -164.83 66.35 REMARK 500 5 ASP A 39 -22.66 178.49 REMARK 500 5 GLU A 56 72.64 67.50 REMARK 500 5 TYR A 65 -75.11 -122.93 REMARK 500 5 ALA A 69 36.34 -87.25 REMARK 500 5 LYS A 70 72.01 58.98 REMARK 500 6 SER A 0 17.96 58.83 REMARK 500 6 TYR A 3 173.47 68.23 REMARK 500 6 GLU A 56 88.11 66.92 REMARK 500 7 SER A 2 122.20 71.72 REMARK 500 7 LEU A 37 33.07 -84.02 REMARK 500 7 ASN A 38 -58.70 -147.13 REMARK 500 7 ASP A 39 -34.61 -162.16 REMARK 500 7 GLU A 56 83.75 63.18 REMARK 500 7 TYR A 65 -66.88 -100.64 REMARK 500 7 ASN A 68 87.97 -66.44 REMARK 500 7 ALA A 69 67.68 -101.92 REMARK 500 8 SER A 2 85.52 69.07 REMARK 500 REMARK 500 THIS ENTRY HAS 125 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 34462 RELATED DB: BMRB REMARK 900 SOLUTION STRUCTURE OF THE MODULATOR OF REPRESSION (MOR) OF THE REMARK 900 TEMPERATE BACTERIOPHAGE TP901-1 FROM LACTOCOCCUS LACTIS DBREF 6TO6 A 1 72 UNP O48504 O48504_9CAUD 1 72 SEQADV 6TO6 GLY A -1 UNP O48504 EXPRESSION TAG SEQADV 6TO6 SER A 0 UNP O48504 EXPRESSION TAG SEQRES 1 A 74 GLY SER MET SER TYR ASP TYR SER SER LEU LEU GLY LYS SEQRES 2 A 74 ILE THR GLU LYS CYS GLY THR GLN TYR ASN PHE ALA ILE SEQRES 3 A 74 ALA MET GLY LEU SER GLU ARG THR VAL SER LEU LYS LEU SEQRES 4 A 74 ASN ASP LYS VAL THR TRP LYS ASP ASP GLU ILE LEU LYS SEQRES 5 A 74 ALA VAL HIS VAL LEU GLU LEU ASN PRO GLN ASP ILE PRO SEQRES 6 A 74 LYS TYR PHE PHE ASN ALA LYS VAL HIS HELIX 1 AA1 TYR A 5 CYS A 16 1 12 HELIX 2 AA2 THR A 18 GLY A 27 1 10 HELIX 3 AA3 SER A 29 LEU A 37 1 9 HELIX 4 AA4 LYS A 44 GLU A 56 1 13 HELIX 5 AA5 ASP A 61 PHE A 66 1 6 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1