HEADER DNA BINDING PROTEIN 11-DEC-19 6TOB TITLE STRUCTURAL AND DNA BINDING PROPERTIES OF MYCOBACTERIAL INTEGRATION TITLE 2 HOST FACTOR MIHF COMPND MOL_ID: 1; COMPND 2 MOLECULE: INTEGRATION HOST FACTOR MIHF; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 1773; SOURCE 4 GENE: MIHF, ERS007672_05099, ERS007703_04035; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS - TRANSCRIPTIONAL CONTROL. MYCOBACTERIAL INTEGRATION HOST FACTOR - KEYWDS 2 MIHF IS AN ALPHA-HELICAL PROTEIN WITH TWO DNA-BINDING SITES, DNA KEYWDS 3 BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR T.HERRMANN REVDAT 3 14-JUN-23 6TOB 1 REMARK REVDAT 2 04-MAR-20 6TOB 1 JRNL REVDAT 1 25-DEC-19 6TOB 0 JRNL AUTH N.T.ODERMATT,M.LELLI,T.HERRMANN,L.A.ABRIATA,A.JAPARIDZE, JRNL AUTH 2 H.VOILQUIN,R.SINGH,J.PITON,L.EMSLEY,G.DIETLER,S.T.COLE JRNL TITL STRUCTURAL AND DNA BINDING PROPERTIES OF MYCOBACTERIAL JRNL TITL 2 INTEGRATION HOST FACTOR MIHF. JRNL REF J.STRUCT.BIOL. V. 209 07434 2020 JRNL REFN ESSN 1095-8657 JRNL PMID 31846718 JRNL DOI 10.1016/J.JSB.2019.107434 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER A. T. ET.AL. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6TOB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 11-DEC-19. REMARK 100 THE DEPOSITION ID IS D_1292105796. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.5 REMARK 210 IONIC STRENGTH : 100 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 1.34 MM [U-13C; U-15N] REMARK 210 MYCOBACTERIAL INTEGRATION HOST REMARK 210 FACTOR (MIHF), 50 MM SODIUM REMARK 210 PHOSPHATE, 100 MM SODIUM REMARK 210 CHLORIDE, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : CBCACONH; HACACONH; HACANH; 1H REMARK 210 -13C 3D HSQC NOESY; 1H-15N 3D REMARK 210 HSQC NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 1000 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE III REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA 3.98, UNIO 2.9 REMARK 210 METHOD USED : MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 80 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8570 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 2 84.28 58.46 REMARK 500 1 HIS A 3 179.47 58.38 REMARK 500 1 ALA A 28 92.73 -66.54 REMARK 500 1 ARG A 29 -45.66 -147.20 REMARK 500 1 LEU A 94 158.14 -49.32 REMARK 500 1 ASP A 96 -168.66 -174.70 REMARK 500 2 HIS A 3 -170.62 -172.84 REMARK 500 2 ALA A 28 103.73 -51.72 REMARK 500 2 ARG A 29 -47.99 -151.55 REMARK 500 3 SER A 2 87.70 -173.48 REMARK 500 3 ALA A 28 -169.81 64.07 REMARK 500 3 THR A 88 34.08 -99.45 REMARK 500 3 LEU A 94 178.94 -56.58 REMARK 500 3 ASP A 96 20.99 -148.23 REMARK 500 4 SER A 2 63.04 60.99 REMARK 500 4 HIS A 3 -171.24 -173.13 REMARK 500 4 ALA A 28 103.42 -51.76 REMARK 500 4 ARG A 29 -42.04 -153.93 REMARK 500 4 ASP A 96 29.66 -170.17 REMARK 500 5 THR A 11 -173.14 -63.37 REMARK 500 5 ALA A 28 30.40 -97.44 REMARK 500 5 THR A 88 33.97 -94.80 REMARK 500 5 LEU A 94 -169.25 -114.36 REMARK 500 6 THR A 11 -173.16 -63.18 REMARK 500 6 ARG A 29 -48.54 -141.15 REMARK 500 6 ASP A 96 -166.82 -60.89 REMARK 500 7 HIS A 3 179.33 57.62 REMARK 500 7 THR A 11 176.53 -57.08 REMARK 500 7 ALA A 28 -83.14 -77.24 REMARK 500 7 ARG A 29 -77.02 66.71 REMARK 500 8 SER A 2 120.66 -178.93 REMARK 500 8 HIS A 3 146.35 -179.21 REMARK 500 8 THR A 11 -172.95 -59.10 REMARK 500 8 ARG A 29 -49.55 -179.68 REMARK 500 8 THR A 88 33.63 -97.74 REMARK 500 8 ASP A 96 -167.72 63.69 REMARK 500 9 SER A 2 -65.45 -132.80 REMARK 500 9 HIS A 3 -179.39 57.97 REMARK 500 9 ALA A 28 96.40 -60.65 REMARK 500 9 ARG A 29 -48.53 -153.65 REMARK 500 10 HIS A 3 -173.62 -177.39 REMARK 500 10 MET A 4 172.11 -55.08 REMARK 500 10 ARG A 29 -58.57 -179.57 REMARK 500 10 THR A 88 31.20 -96.14 REMARK 500 10 ASP A 96 -74.48 -113.64 REMARK 500 11 ARG A 29 -48.88 -147.49 REMARK 500 11 THR A 88 32.27 -94.38 REMARK 500 11 LEU A 94 -169.49 -60.38 REMARK 500 11 ASP A 96 -34.09 -179.87 REMARK 500 12 ALA A 6 84.78 -69.63 REMARK 500 REMARK 500 THIS ENTRY HAS 81 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 34463 RELATED DB: BMRB REMARK 900 STRUCTURAL AND DNA BINDING PROPERTIES OF MYCOBACTERIAL INTEGRATION REMARK 900 HOST FACTOR MIHF DBREF1 6TOB A 5 109 UNP A0A0U0SDY2_MYCTX DBREF2 6TOB A A0A0U0SDY2 53 157 SEQADV 6TOB GLY A 1 UNP A0A0U0SDY EXPRESSION TAG SEQADV 6TOB SER A 2 UNP A0A0U0SDY EXPRESSION TAG SEQADV 6TOB HIS A 3 UNP A0A0U0SDY EXPRESSION TAG SEQADV 6TOB MET A 4 UNP A0A0U0SDY EXPRESSION TAG SEQRES 1 A 109 GLY SER HIS MET VAL ALA LEU PRO GLN LEU THR ASP GLU SEQRES 2 A 109 GLN ARG ALA ALA ALA LEU GLU LYS ALA ALA ALA ALA ARG SEQRES 3 A 109 ARG ALA ARG ALA GLU LEU LYS ASP ARG LEU LYS ARG GLY SEQRES 4 A 109 GLY THR ASN LEU THR GLN VAL LEU LYS ASP ALA GLU SER SEQRES 5 A 109 ASP GLU VAL LEU GLY LYS MET LYS VAL SER ALA LEU LEU SEQRES 6 A 109 GLU ALA LEU PRO LYS VAL GLY LYS VAL LYS ALA GLN GLU SEQRES 7 A 109 ILE MET THR GLU LEU GLU ILE ALA PRO THR ARG ARG LEU SEQRES 8 A 109 ARG GLY LEU GLY ASP ARG GLN ARG LYS ALA LEU LEU GLU SEQRES 9 A 109 LYS PHE GLY SER ALA HELIX 1 AA1 THR A 11 ARG A 15 5 5 HELIX 2 AA2 GLU A 20 ALA A 28 1 9 HELIX 3 AA3 ARG A 29 GLY A 39 1 11 HELIX 4 AA4 ASN A 42 ALA A 50 1 9 HELIX 5 AA5 VAL A 55 MET A 59 5 5 HELIX 6 AA6 LYS A 60 ALA A 67 1 8 HELIX 7 AA7 GLY A 72 GLU A 84 1 13 HELIX 8 AA8 ASP A 96 GLY A 107 1 12 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1