HEADER TRANSCRIPTION 11-DEC-19 6TOG
TITLE CRYSTAL STRUCTURE OF HUMAN BCL6 BTB DOMAIN IN COMPLEX WITH COMPOUND 5
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: B-CELL LYMPHOMA 6 PROTEIN;
COMPND 3 CHAIN: A;
COMPND 4 SYNONYM: BCL-6,B-CELL LYMPHOMA 5 PROTEIN,BCL-5,PROTEIN LAZ-3,ZINC
COMPND 5 FINGER AND BTB DOMAIN-CONTAINING PROTEIN 27,ZINC FINGER PROTEIN 51;
COMPND 6 ENGINEERED: YES;
COMPND 7 MOL_ID: 2;
COMPND 8 MOLECULE: ALA-TRP-VAL-ILE-PRO-ALA;
COMPND 9 CHAIN: B;
COMPND 10 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 3 ORGANISM_COMMON: HUMAN;
SOURCE 4 ORGANISM_TAXID: 9606;
SOURCE 5 GENE: BCL6, BCL5, LAZ3, ZBTB27, ZNF51;
SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21;
SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693;
SOURCE 8 EXPRESSION_SYSTEM_VARIANT: AI;
SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;
SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET48B;
SOURCE 11 MOL_ID: 2;
SOURCE 12 SYNTHETIC: YES;
SOURCE 13 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT;
SOURCE 14 ORGANISM_TAXID: 32630
KEYWDS CANCER, LYMPHOMA, INHIBITOR, DEGRADER, TRANSCRIPTION
EXPDTA X-RAY DIFFRACTION
AUTHOR K.SHETTY,Y.-V.LE BIHAN,R.L.M.VAN MONTFORT
REVDAT 3 24-JAN-24 6TOG 1 REMARK
REVDAT 2 06-MAY-20 6TOG 1 JRNL
REVDAT 1 22-APR-20 6TOG 0
JRNL AUTH B.R.BELLENIE,K.J.CHEUNG,A.VARELA,O.A.PIERRAT,G.W.COLLIE,
JRNL AUTH 2 G.M.BOX,M.D.BRIGHT,S.GOWAN,A.HAYES,M.J.RODRIGUES,K.N.SHETTY,
JRNL AUTH 3 M.CARTER,O.A.DAVIS,A.T.HENLEY,P.INNOCENTI,L.D.JOHNSON,M.LIU,
JRNL AUTH 4 S.DE KLERK,Y.V.LE BIHAN,M.G.LLOYD,P.C.MCANDREW,E.SHEHU,
JRNL AUTH 5 R.TALBOT,H.L.WOODWARD,R.BURKE,V.KIRKIN,R.L.M.VAN MONTFORT,
JRNL AUTH 6 F.I.RAYNAUD,O.W.ROSSANESE,S.HOELDER
JRNL TITL ACHIEVINGIN VIVOTARGET DEPLETION THROUGH THE DISCOVERY AND
JRNL TITL 2 OPTIMIZATION OF BENZIMIDAZOLONE BCL6 DEGRADERS.
JRNL REF J.MED.CHEM. V. 63 4047 2020
JRNL REFN ISSN 0022-2623
JRNL PMID 32275432
JRNL DOI 10.1021/ACS.JMEDCHEM.9B02076
REMARK 2
REMARK 2 RESOLUTION. 1.69 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : BUSTER 2.10.3
REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER,
REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN,
REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.69
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.15
REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000
REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9
REMARK 3 NUMBER OF REFLECTIONS : 23984
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT
REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM
REMARK 3 R VALUE (WORKING + TEST SET) : 0.232
REMARK 3 R VALUE (WORKING SET) : 0.231
REMARK 3 FREE R VALUE : 0.250
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.780
REMARK 3 FREE R VALUE TEST SET COUNT : 1147
REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL
REMARK 3
REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN.
REMARK 3 TOTAL NUMBER OF BINS USED : 50
REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.69
REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.70
REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.79
REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 480
REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2481
REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 458
REMARK 3 BIN R VALUE (WORKING SET) : 0.2442
REMARK 3 BIN FREE R VALUE : 0.3240
REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.58
REMARK 3 BIN FREE R VALUE TEST SET COUNT : 22
REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.000
REMARK 3
REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.
REMARK 3 PROTEIN ATOMS : 1004
REMARK 3 NUCLEIC ACID ATOMS : 0
REMARK 3 HETEROGEN ATOMS : 19
REMARK 3 SOLVENT ATOMS : 72
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : 27.92
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.52
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : 0.49430
REMARK 3 B22 (A**2) : 0.49430
REMARK 3 B33 (A**2) : -0.98860
REMARK 3 B12 (A**2) : 0.00000
REMARK 3 B13 (A**2) : 0.00000
REMARK 3 B23 (A**2) : 0.00000
REMARK 3
REMARK 3 ESTIMATED COORDINATE ERROR.
REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.350
REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.098
REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.095
REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.093
REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.091
REMARK 3
REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797
REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601
REMARK 3
REMARK 3 CORRELATION COEFFICIENTS.
REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.934
REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.916
REMARK 3
REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15
REMARK 3 TERM COUNT WEIGHT FUNCTION.
REMARK 3 BOND LENGTHS : 1061 ; 2.000 ; HARMONIC
REMARK 3 BOND ANGLES : 1437 ; 2.000 ; HARMONIC
REMARK 3 TORSION ANGLES : 378 ; 2.000 ; SINUSOIDAL
REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL
REMARK 3 GENERAL PLANES : 185 ; 5.000 ; HARMONIC
REMARK 3 ISOTROPIC THERMAL FACTORS : 1061 ; 20.000 ; HARMONIC
REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL
REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL
REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL
REMARK 3 CHIRAL IMPROPER TORSION : 144 ; 5.000 ; SEMIHARMONIC
REMARK 3 SUM OF OCCUPANCIES : 12 ; 1.000 ; HARMONIC
REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL
REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL
REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL
REMARK 3 IDEAL-DIST CONTACT TERM : 1320 ; 4.000 ; SEMIHARMONIC
REMARK 3
REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES.
REMARK 3 BOND LENGTHS (A) : 0.010
REMARK 3 BOND ANGLES (DEGREES) : 1.13
REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.92
REMARK 3 OTHER TORSION ANGLES (DEGREES) : 16.64
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : 9
REMARK 3
REMARK 3 TLS GROUP : 1
REMARK 3 SELECTION: {A|6 - 13}
REMARK 3 ORIGIN FOR THE GROUP (A): -46.9735 23.0253 -22.9165
REMARK 3 T TENSOR
REMARK 3 T11: 0.0880 T22: -0.1049
REMARK 3 T33: 0.1167 T12: 0.1848
REMARK 3 T13: -0.1360 T23: -0.0683
REMARK 3 L TENSOR
REMARK 3 L11: 8.6383 L22: 0.8469
REMARK 3 L33: 1.3464 L12: 1.0934
REMARK 3 L13: 3.8807 L23: -0.9008
REMARK 3 S TENSOR
REMARK 3 S11: 0.2053 S12: -0.1233 S13: 0.2020
REMARK 3 S21: -0.0488 S22: -0.2465 S23: -0.1586
REMARK 3 S31: -0.0972 S32: -0.0980 S33: 0.0412
REMARK 3
REMARK 3 TLS GROUP : 2
REMARK 3 SELECTION: {A|14 - 27}
REMARK 3 ORIGIN FOR THE GROUP (A): -38.5157 15.7131 -9.0075
REMARK 3 T TENSOR
REMARK 3 T11: -0.0895 T22: -0.0887
REMARK 3 T33: 0.2211 T12: -0.0069
REMARK 3 T13: -0.0935 T23: -0.0575
REMARK 3 L TENSOR
REMARK 3 L11: 2.0152 L22: 5.0623
REMARK 3 L33: 8.3155 L12: -0.7890
REMARK 3 L13: -2.3224 L23: 0.7934
REMARK 3 S TENSOR
REMARK 3 S11: 0.0918 S12: -0.2311 S13: -0.4310
REMARK 3 S21: 0.1488 S22: -0.0970 S23: 0.1883
REMARK 3 S31: 0.1418 S32: -0.1884 S33: 0.0052
REMARK 3
REMARK 3 TLS GROUP : 3
REMARK 3 SELECTION: {A|28 - 33}
REMARK 3 ORIGIN FOR THE GROUP (A): -28.5791 9.2807 -6.3508
REMARK 3 T TENSOR
REMARK 3 T11: -0.0989 T22: 0.0255
REMARK 3 T33: 0.1535 T12: 0.1191
REMARK 3 T13: -0.1075 T23: -0.0803
REMARK 3 L TENSOR
REMARK 3 L11: -0.9895 L22: 1.3601
REMARK 3 L33: 2.0912 L12: 0.8477
REMARK 3 L13: -0.5860 L23: 3.0019
REMARK 3 S TENSOR
REMARK 3 S11: -0.0732 S12: -0.0777 S13: -0.1504
REMARK 3 S21: 0.1663 S22: 0.1222 S23: -0.0372
REMARK 3 S31: 0.1775 S32: 0.5793 S33: -0.0490
REMARK 3
REMARK 3 TLS GROUP : 4
REMARK 3 SELECTION: {A|34 - 79}
REMARK 3 ORIGIN FOR THE GROUP (A): -21.1809 21.7863 -2.6479
REMARK 3 T TENSOR
REMARK 3 T11: -0.1798 T22: 0.1997
REMARK 3 T33: 0.1833 T12: -0.0247
REMARK 3 T13: -0.0556 T23: -0.2076
REMARK 3 L TENSOR
REMARK 3 L11: 5.9725 L22: 1.8629
REMARK 3 L33: 1.4868 L12: -0.0473
REMARK 3 L13: 0.6678 L23: 2.0526
REMARK 3 S TENSOR
REMARK 3 S11: 0.2798 S12: -0.6115 S13: 0.0845
REMARK 3 S21: 0.1682 S22: 0.1792 S23: -0.2420
REMARK 3 S31: 0.2905 S32: 0.5853 S33: -0.4590
REMARK 3
REMARK 3 TLS GROUP : 5
REMARK 3 SELECTION: {A|80 - 92}
REMARK 3 ORIGIN FOR THE GROUP (A): -32.7335 23.1920 1.4867
REMARK 3 T TENSOR
REMARK 3 T11: -0.2542 T22: 0.0775
REMARK 3 T33: 0.0382 T12: -0.0016
REMARK 3 T13: -0.0023 T23: -0.1768
REMARK 3 L TENSOR
REMARK 3 L11: 2.5011 L22: -2.5011
REMARK 3 L33: 8.3155 L12: -1.4440
REMARK 3 L13: 3.7333 L23: -0.6455
REMARK 3 S TENSOR
REMARK 3 S11: 0.0902 S12: -0.7243 S13: -0.1810
REMARK 3 S21: 0.3091 S22: 0.2664 S23: 0.3115
REMARK 3 S31: -0.0066 S32: 0.0257 S33: -0.3566
REMARK 3
REMARK 3 TLS GROUP : 6
REMARK 3 SELECTION: {A|93 - 101}
REMARK 3 ORIGIN FOR THE GROUP (A): -39.5149 28.2811 5.5703
REMARK 3 T TENSOR
REMARK 3 T11: -0.1074 T22: 0.2494
REMARK 3 T33: 0.3025 T12: -0.0050
REMARK 3 T13: 0.0446 T23: -0.1497
REMARK 3 L TENSOR
REMARK 3 L11: 10.2975 L22: 4.1795
REMARK 3 L33: 1.4155 L12: -0.5225
REMARK 3 L13: 0.3478 L23: -2.0982
REMARK 3 S TENSOR
REMARK 3 S11: -0.0859 S12: -0.2211 S13: -0.0538
REMARK 3 S21: -0.1689 S22: 0.3272 S23: 0.0922
REMARK 3 S31: 0.2473 S32: -0.0646 S33: -0.2413
REMARK 3
REMARK 3 TLS GROUP : 7
REMARK 3 SELECTION: {A|102 - 114}
REMARK 3 ORIGIN FOR THE GROUP (A): -28.7055 32.9478 3.0690
REMARK 3 T TENSOR
REMARK 3 T11: -0.3936 T22: -0.0465
REMARK 3 T33: 0.1336 T12: 0.0034
REMARK 3 T13: -0.0463 T23: -0.2022
REMARK 3 L TENSOR
REMARK 3 L11: 2.9019 L22: 6.3797
REMARK 3 L33: 3.2634 L12: 1.4378
REMARK 3 L13: 1.0653 L23: 3.9757
REMARK 3 S TENSOR
REMARK 3 S11: -0.0804 S12: -0.3786 S13: 0.3807
REMARK 3 S21: 0.3238 S22: 0.1853 S23: -0.3334
REMARK 3 S31: -0.4503 S32: -0.3085 S33: -0.1049
REMARK 3
REMARK 3 TLS GROUP : 8
REMARK 3 SELECTION: {A|115 - 129}
REMARK 3 ORIGIN FOR THE GROUP (A): -37.5027 39.3467 2.7672
REMARK 3 T TENSOR
REMARK 3 T11: -0.3257 T22: -0.0524
REMARK 3 T33: 0.3040 T12: -0.0085
REMARK 3 T13: -0.0256 T23: -0.1903
REMARK 3 L TENSOR
REMARK 3 L11: 5.4252 L22: 9.4905
REMARK 3 L33: 1.6682 L12: 2.1638
REMARK 3 L13: 0.8552 L23: -1.2658
REMARK 3 S TENSOR
REMARK 3 S11: 0.0566 S12: 0.2267 S13: 0.0704
REMARK 3 S21: -0.2823 S22: -0.1796 S23: -0.1937
REMARK 3 S31: -0.0796 S32: 0.1122 S33: 0.1230
REMARK 3
REMARK 3 TLS GROUP : 9
REMARK 3 SELECTION: {B|0 - 5}
REMARK 3 ORIGIN FOR THE GROUP (A): -49.9841 24.2218 -23.5006
REMARK 3 T TENSOR
REMARK 3 T11: 0.0098 T22: -0.0866
REMARK 3 T33: 0.1738 T12: 0.2362
REMARK 3 T13: -0.1361 T23: -0.0683
REMARK 3 L TENSOR
REMARK 3 L11: 1.7945 L22: 0.9007
REMARK 3 L33: 0.0000 L12: -1.8141
REMARK 3 L13: 1.2483 L23: 3.6587
REMARK 3 S TENSOR
REMARK 3 S11: -0.0438 S12: 0.0900 S13: 0.2401
REMARK 3 S21: 0.0423 S22: 0.0985 S23: 0.0704
REMARK 3 S31: 0.3685 S32: 0.0722 S33: -0.0548
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 6TOG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 11-DEC-19.
REMARK 100 THE DEPOSITION ID IS D_1292104936.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 22-MAY-15
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : 7
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : DIAMOND
REMARK 200 BEAMLINE : I03
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 0.9763
REMARK 200 MONOCHROMATOR : NULL
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : PIXEL
REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS
REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.7
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24088
REMARK 200 RESOLUTION RANGE HIGH (A) : 1.690
REMARK 200 RESOLUTION RANGE LOW (A) : 29.150
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0
REMARK 200 DATA REDUNDANCY : 36.70
REMARK 200 R MERGE (I) : 0.15800
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 16.9000
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.69
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.72
REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0
REMARK 200 DATA REDUNDANCY IN SHELL : 35.20
REMARK 200 R MERGE FOR SHELL (I) : 3.60100
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: PHASER
REMARK 200 STARTING MODEL: 3BIM
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 63.00
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.32
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 2 MICROLITER OF THE BCL6-BTB/WVIP
REMARK 280 COMPLEX AT 4 MG/ML PLUS 1 MICROLITER OF A CRYSTALLISATION
REMARK 280 SOLUTION CONSISTING OF 1 M K2HPO4, 0.7 M NAH2PO4, 75 MM SODIUM
REMARK 280 ACETATE BUFFER PH 4.5 AND 2 % DMSO, AGAINST 350 MICROLITER OF
REMARK 280 CRYSTALLISATION SOLUTION., PH 7, VAPOR DIFFUSION, HANGING DROP,
REMARK 280 TEMPERATURE 291K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -Y,X-Y,Z+1/3
REMARK 290 3555 -X+Y,-X,Z+2/3
REMARK 290 4555 -X,-Y,Z+1/2
REMARK 290 5555 Y,-X+Y,Z+5/6
REMARK 290 6555 X-Y,X,Z+1/6
REMARK 290 7555 Y,X,-Z+1/3
REMARK 290 8555 X-Y,-Y,-Z
REMARK 290 9555 -X,-X+Y,-Z+2/3
REMARK 290 10555 -Y,-X,-Z+5/6
REMARK 290 11555 -X+Y,Y,-Z+1/2
REMARK 290 12555 X,X-Y,-Z+1/6
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000
REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 51.46500
REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000
REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000
REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 102.93000
REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 77.19750
REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000
REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000
REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 128.66250
REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000
REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000
REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 25.73250
REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000
REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000
REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 51.46500
REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000
REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000
REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 102.93000
REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000
REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000
REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 128.66250
REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 77.19750
REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000
REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000
REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 25.73250
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 TOTAL BURIED SURFACE AREA: 5840 ANGSTROM**2
REMARK 350 SURFACE AREA OF THE COMPLEX: 12970 ANGSTROM**2
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -72.0 KCAL/MOL
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 350 BIOMT1 2 0.500000 -0.866025 0.000000 0.00000
REMARK 350 BIOMT2 2 -0.866025 -0.500000 0.000000 0.00000
REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -25.73250
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 GLY A 2
REMARK 465 PRO A 3
REMARK 465 GLY A 4
REMARK 465 ALA A 5
REMARK 470
REMARK 470 MISSING ATOM
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 470 I=INSERTION CODE):
REMARK 470 M RES CSSEQI ATOMS
REMARK 470 ASP A 6 N CB CG OD1 OD2
REMARK 470 ARG A 13 NE CZ NH1 NH2
REMARK 470 GLN A 64 CD OE1 NE2
REMARK 470 GLU A 77 CG CD OE1 OE2
REMARK 470 ARG A 98 CD NE CZ NH1 NH2
REMARK 470 GLU A 115 OE1
REMARK 470 ARG A 122 NH2
REMARK 470 LYS A 123 NZ
REMARK 470 LYS A 126 NZ
REMARK 470 GLU A 129 O OE1 OE2
REMARK 470 ALA B 0 N CB
REMARK 470 ALA B 5 CA C O CB
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 MET A 114 77.74 -117.24
REMARK 500
REMARK 500 REMARK: NULL
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue NQH A 201
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue DMS A 202
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC3
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 203
DBREF 6TOG A 5 129 UNP P41182 BCL6_HUMAN 5 129
DBREF 6TOG B 0 5 PDB 6TOG 6TOG 0 5
SEQADV 6TOG GLY A 2 UNP P41182 EXPRESSION TAG
SEQADV 6TOG PRO A 3 UNP P41182 EXPRESSION TAG
SEQADV 6TOG GLY A 4 UNP P41182 EXPRESSION TAG
SEQRES 1 A 128 GLY PRO GLY ALA ASP SER CYS ILE GLN PHE THR ARG HIS
SEQRES 2 A 128 ALA SER ASP VAL LEU LEU ASN LEU ASN ARG LEU ARG SER
SEQRES 3 A 128 ARG ASP ILE LEU THR ASP VAL VAL ILE VAL VAL SER ARG
SEQRES 4 A 128 GLU GLN PHE ARG ALA HIS LYS THR VAL LEU MET ALA CYS
SEQRES 5 A 128 SER GLY LEU PHE TYR SER ILE PHE THR ASP GLN LEU LYS
SEQRES 6 A 128 CYS ASN LEU SER VAL ILE ASN LEU ASP PRO GLU ILE ASN
SEQRES 7 A 128 PRO GLU GLY PHE CYS ILE LEU LEU ASP PHE MET TYR THR
SEQRES 8 A 128 SER ARG LEU ASN LEU ARG GLU GLY ASN ILE MET ALA VAL
SEQRES 9 A 128 MET ALA THR ALA MET TYR LEU GLN MET GLU HIS VAL VAL
SEQRES 10 A 128 ASP THR CYS ARG LYS PHE ILE LYS ALA SER GLU
SEQRES 1 B 6 ALA TRP VAL ILE PRO ALA
HET NQH A 201 14
HET DMS A 202 4
HET CL A 203 1
HETNAM NQH 2-CHLORANYL-4-(CYCLOPROPYLMETHYLAMINO)PYRIDINE-3-
HETNAM 2 NQH CARBONITRILE
HETNAM DMS DIMETHYL SULFOXIDE
HETNAM CL CHLORIDE ION
FORMUL 3 NQH C10 H10 CL N3
FORMUL 4 DMS C2 H6 O S
FORMUL 5 CL CL 1-
FORMUL 6 HOH *72(H2 O)
HELIX 1 AA1 ARG A 13 ARG A 28 1 16
HELIX 2 AA2 HIS A 46 SER A 54 1 9
HELIX 3 AA3 SER A 54 THR A 62 1 9
HELIX 4 AA4 LEU A 65 LEU A 69 5 5
HELIX 5 AA5 ASN A 79 SER A 93 1 15
HELIX 6 AA6 ASN A 101 LEU A 112 1 12
HELIX 7 AA7 MET A 114 GLU A 129 1 16
SHEET 1 AA1 2 GLN A 10 PHE A 11 0
SHEET 2 AA1 2 TRP B 1 VAL B 2 -1 O VAL B 2 N GLN A 10
SHEET 1 AA2 3 GLU A 41 ALA A 45 0
SHEET 2 AA2 3 VAL A 34 VAL A 38 -1 N ILE A 36 O PHE A 43
SHEET 3 AA2 3 VAL A 71 ASN A 73 1 O ILE A 72 N VAL A 37
SITE 1 AC1 8 ASN A 21 LEU A 25 MET A 51 ALA A 52
SITE 2 AC1 8 CYS A 53 SER A 54 GLY A 55 TYR A 58
SITE 1 AC2 2 ARG A 24 SER A 27
SITE 1 AC3 1 HIS A 116
CRYST1 67.329 67.329 154.395 90.00 90.00 120.00 P 61 2 2 12
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.014852 0.008575 0.000000 0.00000
SCALE2 0.000000 0.017150 0.000000 0.00000
SCALE3 0.000000 0.000000 0.006477 0.00000