HEADER TRANSCRIPTION 11-DEC-19 6TOG TITLE CRYSTAL STRUCTURE OF HUMAN BCL6 BTB DOMAIN IN COMPLEX WITH COMPOUND 5 COMPND MOL_ID: 1; COMPND 2 MOLECULE: B-CELL LYMPHOMA 6 PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: BCL-6,B-CELL LYMPHOMA 5 PROTEIN,BCL-5,PROTEIN LAZ-3,ZINC COMPND 5 FINGER AND BTB DOMAIN-CONTAINING PROTEIN 27,ZINC FINGER PROTEIN 51; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: ALA-TRP-VAL-ILE-PRO-ALA; COMPND 9 CHAIN: B; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: BCL6, BCL5, LAZ3, ZBTB27, ZNF51; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: AI; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET48B; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 14 ORGANISM_TAXID: 32630 KEYWDS CANCER, LYMPHOMA, INHIBITOR, DEGRADER, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR K.SHETTY,Y.-V.LE BIHAN,R.L.M.VAN MONTFORT REVDAT 3 24-JAN-24 6TOG 1 REMARK REVDAT 2 06-MAY-20 6TOG 1 JRNL REVDAT 1 22-APR-20 6TOG 0 JRNL AUTH B.R.BELLENIE,K.J.CHEUNG,A.VARELA,O.A.PIERRAT,G.W.COLLIE, JRNL AUTH 2 G.M.BOX,M.D.BRIGHT,S.GOWAN,A.HAYES,M.J.RODRIGUES,K.N.SHETTY, JRNL AUTH 3 M.CARTER,O.A.DAVIS,A.T.HENLEY,P.INNOCENTI,L.D.JOHNSON,M.LIU, JRNL AUTH 4 S.DE KLERK,Y.V.LE BIHAN,M.G.LLOYD,P.C.MCANDREW,E.SHEHU, JRNL AUTH 5 R.TALBOT,H.L.WOODWARD,R.BURKE,V.KIRKIN,R.L.M.VAN MONTFORT, JRNL AUTH 6 F.I.RAYNAUD,O.W.ROSSANESE,S.HOELDER JRNL TITL ACHIEVINGIN VIVOTARGET DEPLETION THROUGH THE DISCOVERY AND JRNL TITL 2 OPTIMIZATION OF BENZIMIDAZOLONE BCL6 DEGRADERS. JRNL REF J.MED.CHEM. V. 63 4047 2020 JRNL REFN ISSN 0022-2623 JRNL PMID 32275432 JRNL DOI 10.1021/ACS.JMEDCHEM.9B02076 REMARK 2 REMARK 2 RESOLUTION. 1.69 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.3 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.69 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.15 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 23984 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.232 REMARK 3 R VALUE (WORKING SET) : 0.231 REMARK 3 FREE R VALUE : 0.250 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.780 REMARK 3 FREE R VALUE TEST SET COUNT : 1147 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 50 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.69 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.70 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.79 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 480 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2481 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 458 REMARK 3 BIN R VALUE (WORKING SET) : 0.2442 REMARK 3 BIN FREE R VALUE : 0.3240 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.58 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 22 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1004 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 19 REMARK 3 SOLVENT ATOMS : 72 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 27.92 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.52 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.49430 REMARK 3 B22 (A**2) : 0.49430 REMARK 3 B33 (A**2) : -0.98860 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.350 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.098 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.095 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.093 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.091 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.934 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.916 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 1061 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 1437 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 378 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES : 185 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 1061 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 144 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : 12 ; 1.000 ; HARMONIC REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 1320 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.13 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.92 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 16.64 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: {A|6 - 13} REMARK 3 ORIGIN FOR THE GROUP (A): -46.9735 23.0253 -22.9165 REMARK 3 T TENSOR REMARK 3 T11: 0.0880 T22: -0.1049 REMARK 3 T33: 0.1167 T12: 0.1848 REMARK 3 T13: -0.1360 T23: -0.0683 REMARK 3 L TENSOR REMARK 3 L11: 8.6383 L22: 0.8469 REMARK 3 L33: 1.3464 L12: 1.0934 REMARK 3 L13: 3.8807 L23: -0.9008 REMARK 3 S TENSOR REMARK 3 S11: 0.2053 S12: -0.1233 S13: 0.2020 REMARK 3 S21: -0.0488 S22: -0.2465 S23: -0.1586 REMARK 3 S31: -0.0972 S32: -0.0980 S33: 0.0412 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: {A|14 - 27} REMARK 3 ORIGIN FOR THE GROUP (A): -38.5157 15.7131 -9.0075 REMARK 3 T TENSOR REMARK 3 T11: -0.0895 T22: -0.0887 REMARK 3 T33: 0.2211 T12: -0.0069 REMARK 3 T13: -0.0935 T23: -0.0575 REMARK 3 L TENSOR REMARK 3 L11: 2.0152 L22: 5.0623 REMARK 3 L33: 8.3155 L12: -0.7890 REMARK 3 L13: -2.3224 L23: 0.7934 REMARK 3 S TENSOR REMARK 3 S11: 0.0918 S12: -0.2311 S13: -0.4310 REMARK 3 S21: 0.1488 S22: -0.0970 S23: 0.1883 REMARK 3 S31: 0.1418 S32: -0.1884 S33: 0.0052 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: {A|28 - 33} REMARK 3 ORIGIN FOR THE GROUP (A): -28.5791 9.2807 -6.3508 REMARK 3 T TENSOR REMARK 3 T11: -0.0989 T22: 0.0255 REMARK 3 T33: 0.1535 T12: 0.1191 REMARK 3 T13: -0.1075 T23: -0.0803 REMARK 3 L TENSOR REMARK 3 L11: -0.9895 L22: 1.3601 REMARK 3 L33: 2.0912 L12: 0.8477 REMARK 3 L13: -0.5860 L23: 3.0019 REMARK 3 S TENSOR REMARK 3 S11: -0.0732 S12: -0.0777 S13: -0.1504 REMARK 3 S21: 0.1663 S22: 0.1222 S23: -0.0372 REMARK 3 S31: 0.1775 S32: 0.5793 S33: -0.0490 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: {A|34 - 79} REMARK 3 ORIGIN FOR THE GROUP (A): -21.1809 21.7863 -2.6479 REMARK 3 T TENSOR REMARK 3 T11: -0.1798 T22: 0.1997 REMARK 3 T33: 0.1833 T12: -0.0247 REMARK 3 T13: -0.0556 T23: -0.2076 REMARK 3 L TENSOR REMARK 3 L11: 5.9725 L22: 1.8629 REMARK 3 L33: 1.4868 L12: -0.0473 REMARK 3 L13: 0.6678 L23: 2.0526 REMARK 3 S TENSOR REMARK 3 S11: 0.2798 S12: -0.6115 S13: 0.0845 REMARK 3 S21: 0.1682 S22: 0.1792 S23: -0.2420 REMARK 3 S31: 0.2905 S32: 0.5853 S33: -0.4590 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: {A|80 - 92} REMARK 3 ORIGIN FOR THE GROUP (A): -32.7335 23.1920 1.4867 REMARK 3 T TENSOR REMARK 3 T11: -0.2542 T22: 0.0775 REMARK 3 T33: 0.0382 T12: -0.0016 REMARK 3 T13: -0.0023 T23: -0.1768 REMARK 3 L TENSOR REMARK 3 L11: 2.5011 L22: -2.5011 REMARK 3 L33: 8.3155 L12: -1.4440 REMARK 3 L13: 3.7333 L23: -0.6455 REMARK 3 S TENSOR REMARK 3 S11: 0.0902 S12: -0.7243 S13: -0.1810 REMARK 3 S21: 0.3091 S22: 0.2664 S23: 0.3115 REMARK 3 S31: -0.0066 S32: 0.0257 S33: -0.3566 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: {A|93 - 101} REMARK 3 ORIGIN FOR THE GROUP (A): -39.5149 28.2811 5.5703 REMARK 3 T TENSOR REMARK 3 T11: -0.1074 T22: 0.2494 REMARK 3 T33: 0.3025 T12: -0.0050 REMARK 3 T13: 0.0446 T23: -0.1497 REMARK 3 L TENSOR REMARK 3 L11: 10.2975 L22: 4.1795 REMARK 3 L33: 1.4155 L12: -0.5225 REMARK 3 L13: 0.3478 L23: -2.0982 REMARK 3 S TENSOR REMARK 3 S11: -0.0859 S12: -0.2211 S13: -0.0538 REMARK 3 S21: -0.1689 S22: 0.3272 S23: 0.0922 REMARK 3 S31: 0.2473 S32: -0.0646 S33: -0.2413 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: {A|102 - 114} REMARK 3 ORIGIN FOR THE GROUP (A): -28.7055 32.9478 3.0690 REMARK 3 T TENSOR REMARK 3 T11: -0.3936 T22: -0.0465 REMARK 3 T33: 0.1336 T12: 0.0034 REMARK 3 T13: -0.0463 T23: -0.2022 REMARK 3 L TENSOR REMARK 3 L11: 2.9019 L22: 6.3797 REMARK 3 L33: 3.2634 L12: 1.4378 REMARK 3 L13: 1.0653 L23: 3.9757 REMARK 3 S TENSOR REMARK 3 S11: -0.0804 S12: -0.3786 S13: 0.3807 REMARK 3 S21: 0.3238 S22: 0.1853 S23: -0.3334 REMARK 3 S31: -0.4503 S32: -0.3085 S33: -0.1049 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: {A|115 - 129} REMARK 3 ORIGIN FOR THE GROUP (A): -37.5027 39.3467 2.7672 REMARK 3 T TENSOR REMARK 3 T11: -0.3257 T22: -0.0524 REMARK 3 T33: 0.3040 T12: -0.0085 REMARK 3 T13: -0.0256 T23: -0.1903 REMARK 3 L TENSOR REMARK 3 L11: 5.4252 L22: 9.4905 REMARK 3 L33: 1.6682 L12: 2.1638 REMARK 3 L13: 0.8552 L23: -1.2658 REMARK 3 S TENSOR REMARK 3 S11: 0.0566 S12: 0.2267 S13: 0.0704 REMARK 3 S21: -0.2823 S22: -0.1796 S23: -0.1937 REMARK 3 S31: -0.0796 S32: 0.1122 S33: 0.1230 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: {B|0 - 5} REMARK 3 ORIGIN FOR THE GROUP (A): -49.9841 24.2218 -23.5006 REMARK 3 T TENSOR REMARK 3 T11: 0.0098 T22: -0.0866 REMARK 3 T33: 0.1738 T12: 0.2362 REMARK 3 T13: -0.1361 T23: -0.0683 REMARK 3 L TENSOR REMARK 3 L11: 1.7945 L22: 0.9007 REMARK 3 L33: 0.0000 L12: -1.8141 REMARK 3 L13: 1.2483 L23: 3.6587 REMARK 3 S TENSOR REMARK 3 S11: -0.0438 S12: 0.0900 S13: 0.2401 REMARK 3 S21: 0.0423 S22: 0.0985 S23: 0.0704 REMARK 3 S31: 0.3685 S32: 0.0722 S33: -0.0548 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6TOG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 11-DEC-19. REMARK 100 THE DEPOSITION ID IS D_1292104936. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-MAY-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9763 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.7 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24088 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.690 REMARK 200 RESOLUTION RANGE LOW (A) : 29.150 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 36.70 REMARK 200 R MERGE (I) : 0.15800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.69 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.72 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 35.20 REMARK 200 R MERGE FOR SHELL (I) : 3.60100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3BIM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2 MICROLITER OF THE BCL6-BTB/WVIP REMARK 280 COMPLEX AT 4 MG/ML PLUS 1 MICROLITER OF A CRYSTALLISATION REMARK 280 SOLUTION CONSISTING OF 1 M K2HPO4, 0.7 M NAH2PO4, 75 MM SODIUM REMARK 280 ACETATE BUFFER PH 4.5 AND 2 % DMSO, AGAINST 350 MICROLITER OF REMARK 280 CRYSTALLISATION SOLUTION., PH 7, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 51.46500 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 102.93000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 77.19750 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 128.66250 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 25.73250 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 51.46500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 102.93000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 128.66250 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 77.19750 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 25.73250 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5840 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12970 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -72.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -25.73250 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 2 REMARK 465 PRO A 3 REMARK 465 GLY A 4 REMARK 465 ALA A 5 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 6 N CB CG OD1 OD2 REMARK 470 ARG A 13 NE CZ NH1 NH2 REMARK 470 GLN A 64 CD OE1 NE2 REMARK 470 GLU A 77 CG CD OE1 OE2 REMARK 470 ARG A 98 CD NE CZ NH1 NH2 REMARK 470 GLU A 115 OE1 REMARK 470 ARG A 122 NH2 REMARK 470 LYS A 123 NZ REMARK 470 LYS A 126 NZ REMARK 470 GLU A 129 O OE1 OE2 REMARK 470 ALA B 0 N CB REMARK 470 ALA B 5 CA C O CB REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 114 77.74 -117.24 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NQH A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 203 DBREF 6TOG A 5 129 UNP P41182 BCL6_HUMAN 5 129 DBREF 6TOG B 0 5 PDB 6TOG 6TOG 0 5 SEQADV 6TOG GLY A 2 UNP P41182 EXPRESSION TAG SEQADV 6TOG PRO A 3 UNP P41182 EXPRESSION TAG SEQADV 6TOG GLY A 4 UNP P41182 EXPRESSION TAG SEQRES 1 A 128 GLY PRO GLY ALA ASP SER CYS ILE GLN PHE THR ARG HIS SEQRES 2 A 128 ALA SER ASP VAL LEU LEU ASN LEU ASN ARG LEU ARG SER SEQRES 3 A 128 ARG ASP ILE LEU THR ASP VAL VAL ILE VAL VAL SER ARG SEQRES 4 A 128 GLU GLN PHE ARG ALA HIS LYS THR VAL LEU MET ALA CYS SEQRES 5 A 128 SER GLY LEU PHE TYR SER ILE PHE THR ASP GLN LEU LYS SEQRES 6 A 128 CYS ASN LEU SER VAL ILE ASN LEU ASP PRO GLU ILE ASN SEQRES 7 A 128 PRO GLU GLY PHE CYS ILE LEU LEU ASP PHE MET TYR THR SEQRES 8 A 128 SER ARG LEU ASN LEU ARG GLU GLY ASN ILE MET ALA VAL SEQRES 9 A 128 MET ALA THR ALA MET TYR LEU GLN MET GLU HIS VAL VAL SEQRES 10 A 128 ASP THR CYS ARG LYS PHE ILE LYS ALA SER GLU SEQRES 1 B 6 ALA TRP VAL ILE PRO ALA HET NQH A 201 14 HET DMS A 202 4 HET CL A 203 1 HETNAM NQH 2-CHLORANYL-4-(CYCLOPROPYLMETHYLAMINO)PYRIDINE-3- HETNAM 2 NQH CARBONITRILE HETNAM DMS DIMETHYL SULFOXIDE HETNAM CL CHLORIDE ION FORMUL 3 NQH C10 H10 CL N3 FORMUL 4 DMS C2 H6 O S FORMUL 5 CL CL 1- FORMUL 6 HOH *72(H2 O) HELIX 1 AA1 ARG A 13 ARG A 28 1 16 HELIX 2 AA2 HIS A 46 SER A 54 1 9 HELIX 3 AA3 SER A 54 THR A 62 1 9 HELIX 4 AA4 LEU A 65 LEU A 69 5 5 HELIX 5 AA5 ASN A 79 SER A 93 1 15 HELIX 6 AA6 ASN A 101 LEU A 112 1 12 HELIX 7 AA7 MET A 114 GLU A 129 1 16 SHEET 1 AA1 2 GLN A 10 PHE A 11 0 SHEET 2 AA1 2 TRP B 1 VAL B 2 -1 O VAL B 2 N GLN A 10 SHEET 1 AA2 3 GLU A 41 ALA A 45 0 SHEET 2 AA2 3 VAL A 34 VAL A 38 -1 N ILE A 36 O PHE A 43 SHEET 3 AA2 3 VAL A 71 ASN A 73 1 O ILE A 72 N VAL A 37 SITE 1 AC1 8 ASN A 21 LEU A 25 MET A 51 ALA A 52 SITE 2 AC1 8 CYS A 53 SER A 54 GLY A 55 TYR A 58 SITE 1 AC2 2 ARG A 24 SER A 27 SITE 1 AC3 1 HIS A 116 CRYST1 67.329 67.329 154.395 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014852 0.008575 0.000000 0.00000 SCALE2 0.000000 0.017150 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006477 0.00000