data_6TOM # _entry.id 6TOM # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.383 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 6TOM pdb_00006tom 10.2210/pdb6tom/pdb WWPDB D_1292104976 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2020-04-22 2 'Structure model' 1 1 2020-05-06 3 'Structure model' 1 2 2024-01-24 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 3 'Structure model' chem_comp_atom 4 3 'Structure model' chem_comp_bond 5 3 'Structure model' database_2 6 3 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_volume' 2 2 'Structure model' '_citation.page_first' 3 2 'Structure model' '_citation.page_last' 4 2 'Structure model' '_citation_author.identifier_ORCID' 5 3 'Structure model' '_database_2.pdbx_DOI' 6 3 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6TOM _pdbx_database_status.recvd_initial_deposition_date 2019-12-11 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Rodrigues, M.J.' 1 0000-0003-1243-903X 'Le Bihan, Y.-V.' 2 0000-0002-6850-9706 'van Montfort, R.L.M.' 3 0000-0002-5688-3450 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev J.Med.Chem. _citation.journal_id_ASTM JMCMAR _citation.journal_id_CSD 0151 _citation.journal_id_ISSN 0022-2623 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 63 _citation.language ? _citation.page_first 4047 _citation.page_last 4068 _citation.title 'AchievingIn VivoTarget Depletion through the Discovery and Optimization of Benzimidazolone BCL6 Degraders.' _citation.year 2020 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1021/acs.jmedchem.9b02076 _citation.pdbx_database_id_PubMed 32275432 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Bellenie, B.R.' 1 ? primary 'Cheung, K.J.' 2 ? primary 'Varela, A.' 3 ? primary 'Pierrat, O.A.' 4 ? primary 'Collie, G.W.' 5 ? primary 'Box, G.M.' 6 ? primary 'Bright, M.D.' 7 ? primary 'Gowan, S.' 8 ? primary 'Hayes, A.' 9 ? primary 'Rodrigues, M.J.' 10 ? primary 'Shetty, K.N.' 11 ? primary 'Carter, M.' 12 ? primary 'Davis, O.A.' 13 ? primary 'Henley, A.T.' 14 ? primary 'Innocenti, P.' 15 ? primary 'Johnson, L.D.' 16 ? primary 'Liu, M.' 17 ? primary 'de Klerk, S.' 18 ? primary 'Le Bihan, Y.V.' 19 ? primary 'Lloyd, M.G.' 20 ? primary 'McAndrew, P.C.' 21 ? primary 'Shehu, E.' 22 ? primary 'Talbot, R.' 23 ? primary 'Woodward, H.L.' 24 ? primary 'Burke, R.' 25 ? primary 'Kirkin, V.' 26 ? primary 'van Montfort, R.L.M.' 27 ? primary 'Raynaud, F.I.' 28 ? primary 'Rossanese, O.W.' 29 ? primary 'Hoelder, S.' 30 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'B-cell lymphoma 6 protein' 16498.953 1 ? ? ? ? 2 non-polymer syn ;5-[[2-[(3~{S},5~{R})-4,4-bis(fluoranyl)-3,5-dimethyl-piperidin-1-yl]-5-chloranyl-pyrimidin-4-yl]amino]-1-methyl-3-(3-methyl-3-oxidanyl-butyl)benzimidazol-2-one ; 508.992 1 ? ? ? ? 3 non-polymer syn 1,2-ETHANEDIOL 62.068 3 ? ? ? ? 4 water nat water 18.015 95 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'BCL-6,B-cell lymphoma 5 protein,BCL-5,Protein LAZ-3,Zinc finger and BTB domain-containing protein 27,Zinc finger protein 51' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GPGLDYKDDDDKENLYFQGADSCIQFTRHASDVLLNLNRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQL KCNLSVINLDPEINPEGFCILLDFMYTSRLNLREGNIMAVMATAMYLQMEHVVDTCRKFIKASE ; _entity_poly.pdbx_seq_one_letter_code_can ;GPGLDYKDDDDKENLYFQGADSCIQFTRHASDVLLNLNRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQL KCNLSVINLDPEINPEGFCILLDFMYTSRLNLREGNIMAVMATAMYLQMEHVVDTCRKFIKASE ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 ;5-[[2-[(3~{S},5~{R})-4,4-bis(fluoranyl)-3,5-dimethyl-piperidin-1-yl]-5-chloranyl-pyrimidin-4-yl]amino]-1-methyl-3-(3-methyl-3-oxidanyl-butyl)benzimidazol-2-one ; NQZ 3 1,2-ETHANEDIOL EDO 4 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 PRO n 1 3 GLY n 1 4 LEU n 1 5 ASP n 1 6 TYR n 1 7 LYS n 1 8 ASP n 1 9 ASP n 1 10 ASP n 1 11 ASP n 1 12 LYS n 1 13 GLU n 1 14 ASN n 1 15 LEU n 1 16 TYR n 1 17 PHE n 1 18 GLN n 1 19 GLY n 1 20 ALA n 1 21 ASP n 1 22 SER n 1 23 CYS n 1 24 ILE n 1 25 GLN n 1 26 PHE n 1 27 THR n 1 28 ARG n 1 29 HIS n 1 30 ALA n 1 31 SER n 1 32 ASP n 1 33 VAL n 1 34 LEU n 1 35 LEU n 1 36 ASN n 1 37 LEU n 1 38 ASN n 1 39 ARG n 1 40 LEU n 1 41 ARG n 1 42 SER n 1 43 ARG n 1 44 ASP n 1 45 ILE n 1 46 LEU n 1 47 THR n 1 48 ASP n 1 49 VAL n 1 50 VAL n 1 51 ILE n 1 52 VAL n 1 53 VAL n 1 54 SER n 1 55 ARG n 1 56 GLU n 1 57 GLN n 1 58 PHE n 1 59 ARG n 1 60 ALA n 1 61 HIS n 1 62 LYS n 1 63 THR n 1 64 VAL n 1 65 LEU n 1 66 MET n 1 67 ALA n 1 68 CYS n 1 69 SER n 1 70 GLY n 1 71 LEU n 1 72 PHE n 1 73 TYR n 1 74 SER n 1 75 ILE n 1 76 PHE n 1 77 THR n 1 78 ASP n 1 79 GLN n 1 80 LEU n 1 81 LYS n 1 82 CYS n 1 83 ASN n 1 84 LEU n 1 85 SER n 1 86 VAL n 1 87 ILE n 1 88 ASN n 1 89 LEU n 1 90 ASP n 1 91 PRO n 1 92 GLU n 1 93 ILE n 1 94 ASN n 1 95 PRO n 1 96 GLU n 1 97 GLY n 1 98 PHE n 1 99 CYS n 1 100 ILE n 1 101 LEU n 1 102 LEU n 1 103 ASP n 1 104 PHE n 1 105 MET n 1 106 TYR n 1 107 THR n 1 108 SER n 1 109 ARG n 1 110 LEU n 1 111 ASN n 1 112 LEU n 1 113 ARG n 1 114 GLU n 1 115 GLY n 1 116 ASN n 1 117 ILE n 1 118 MET n 1 119 ALA n 1 120 VAL n 1 121 MET n 1 122 ALA n 1 123 THR n 1 124 ALA n 1 125 MET n 1 126 TYR n 1 127 LEU n 1 128 GLN n 1 129 MET n 1 130 GLU n 1 131 HIS n 1 132 VAL n 1 133 VAL n 1 134 ASP n 1 135 THR n 1 136 CYS n 1 137 ARG n 1 138 LYS n 1 139 PHE n 1 140 ILE n 1 141 LYS n 1 142 ALA n 1 143 SER n 1 144 GLU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 144 _entity_src_gen.gene_src_common_name Human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'BCL6, BCL5, LAZ3, ZBTB27, ZNF51' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 511693 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant AI _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET48b _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 EDO non-polymer . 1,2-ETHANEDIOL 'ETHYLENE GLYCOL' 'C2 H6 O2' 62.068 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NQZ non-polymer . ;5-[[2-[(3~{S},5~{R})-4,4-bis(fluoranyl)-3,5-dimethyl-piperidin-1-yl]-5-chloranyl-pyrimidin-4-yl]amino]-1-methyl-3-(3-methyl-3-oxidanyl-butyl)benzimidazol-2-one ; ? 'C24 H31 Cl F2 N6 O2' 508.992 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 -14 ? ? ? A . n A 1 2 PRO 2 -13 ? ? ? A . n A 1 3 GLY 3 -12 ? ? ? A . n A 1 4 LEU 4 -11 ? ? ? A . n A 1 5 ASP 5 -10 ? ? ? A . n A 1 6 TYR 6 -9 ? ? ? A . n A 1 7 LYS 7 -8 ? ? ? A . n A 1 8 ASP 8 -7 ? ? ? A . n A 1 9 ASP 9 -6 ? ? ? A . n A 1 10 ASP 10 -5 ? ? ? A . n A 1 11 ASP 11 -4 ? ? ? A . n A 1 12 LYS 12 -3 ? ? ? A . n A 1 13 GLU 13 -2 ? ? ? A . n A 1 14 ASN 14 -1 -1 ASN ASN A . n A 1 15 LEU 15 0 0 LEU LEU A . n A 1 16 TYR 16 1 1 TYR TYR A . n A 1 17 PHE 17 2 2 PHE PHE A . n A 1 18 GLN 18 3 3 GLN GLN A . n A 1 19 GLY 19 4 4 GLY GLY A . n A 1 20 ALA 20 5 5 ALA ALA A . n A 1 21 ASP 21 6 6 ASP ASP A . n A 1 22 SER 22 7 7 SER SER A . n A 1 23 CYS 23 8 8 CYS CYS A . n A 1 24 ILE 24 9 9 ILE ILE A . n A 1 25 GLN 25 10 10 GLN GLN A . n A 1 26 PHE 26 11 11 PHE PHE A . n A 1 27 THR 27 12 12 THR THR A . n A 1 28 ARG 28 13 13 ARG ARG A . n A 1 29 HIS 29 14 14 HIS HIS A . n A 1 30 ALA 30 15 15 ALA ALA A . n A 1 31 SER 31 16 16 SER SER A . n A 1 32 ASP 32 17 17 ASP ASP A . n A 1 33 VAL 33 18 18 VAL VAL A . n A 1 34 LEU 34 19 19 LEU LEU A . n A 1 35 LEU 35 20 20 LEU LEU A . n A 1 36 ASN 36 21 21 ASN ASN A . n A 1 37 LEU 37 22 22 LEU LEU A . n A 1 38 ASN 38 23 23 ASN ASN A . n A 1 39 ARG 39 24 24 ARG ARG A . n A 1 40 LEU 40 25 25 LEU LEU A . n A 1 41 ARG 41 26 26 ARG ARG A . n A 1 42 SER 42 27 27 SER SER A . n A 1 43 ARG 43 28 28 ARG ARG A . n A 1 44 ASP 44 29 29 ASP ASP A . n A 1 45 ILE 45 30 30 ILE ILE A . n A 1 46 LEU 46 31 31 LEU LEU A . n A 1 47 THR 47 32 32 THR THR A . n A 1 48 ASP 48 33 33 ASP ASP A . n A 1 49 VAL 49 34 34 VAL VAL A . n A 1 50 VAL 50 35 35 VAL VAL A . n A 1 51 ILE 51 36 36 ILE ILE A . n A 1 52 VAL 52 37 37 VAL VAL A . n A 1 53 VAL 53 38 38 VAL VAL A . n A 1 54 SER 54 39 39 SER SER A . n A 1 55 ARG 55 40 40 ARG ARG A . n A 1 56 GLU 56 41 41 GLU GLU A . n A 1 57 GLN 57 42 42 GLN GLN A . n A 1 58 PHE 58 43 43 PHE PHE A . n A 1 59 ARG 59 44 44 ARG ARG A . n A 1 60 ALA 60 45 45 ALA ALA A . n A 1 61 HIS 61 46 46 HIS HIS A . n A 1 62 LYS 62 47 47 LYS LYS A . n A 1 63 THR 63 48 48 THR THR A . n A 1 64 VAL 64 49 49 VAL VAL A . n A 1 65 LEU 65 50 50 LEU LEU A . n A 1 66 MET 66 51 51 MET MET A . n A 1 67 ALA 67 52 52 ALA ALA A . n A 1 68 CYS 68 53 53 CYS CYS A . n A 1 69 SER 69 54 54 SER SER A . n A 1 70 GLY 70 55 55 GLY GLY A . n A 1 71 LEU 71 56 56 LEU LEU A . n A 1 72 PHE 72 57 57 PHE PHE A . n A 1 73 TYR 73 58 58 TYR TYR A . n A 1 74 SER 74 59 59 SER SER A . n A 1 75 ILE 75 60 60 ILE ILE A . n A 1 76 PHE 76 61 61 PHE PHE A . n A 1 77 THR 77 62 62 THR THR A . n A 1 78 ASP 78 63 63 ASP ASP A . n A 1 79 GLN 79 64 64 GLN GLN A . n A 1 80 LEU 80 65 65 LEU LEU A . n A 1 81 LYS 81 66 66 LYS LYS A . n A 1 82 CYS 82 67 67 CYS CYS A . n A 1 83 ASN 83 68 68 ASN ASN A . n A 1 84 LEU 84 69 69 LEU LEU A . n A 1 85 SER 85 70 70 SER SER A . n A 1 86 VAL 86 71 71 VAL VAL A . n A 1 87 ILE 87 72 72 ILE ILE A . n A 1 88 ASN 88 73 73 ASN ASN A . n A 1 89 LEU 89 74 74 LEU LEU A . n A 1 90 ASP 90 75 75 ASP ASP A . n A 1 91 PRO 91 76 76 PRO PRO A . n A 1 92 GLU 92 77 77 GLU GLU A . n A 1 93 ILE 93 78 78 ILE ILE A . n A 1 94 ASN 94 79 79 ASN ASN A . n A 1 95 PRO 95 80 80 PRO PRO A . n A 1 96 GLU 96 81 81 GLU GLU A . n A 1 97 GLY 97 82 82 GLY GLY A . n A 1 98 PHE 98 83 83 PHE PHE A . n A 1 99 CYS 99 84 84 CYS CYS A . n A 1 100 ILE 100 85 85 ILE ILE A . n A 1 101 LEU 101 86 86 LEU LEU A . n A 1 102 LEU 102 87 87 LEU LEU A . n A 1 103 ASP 103 88 88 ASP ASP A . n A 1 104 PHE 104 89 89 PHE PHE A . n A 1 105 MET 105 90 90 MET MET A . n A 1 106 TYR 106 91 91 TYR TYR A . n A 1 107 THR 107 92 92 THR THR A . n A 1 108 SER 108 93 93 SER SER A . n A 1 109 ARG 109 94 94 ARG ARG A . n A 1 110 LEU 110 95 95 LEU LEU A . n A 1 111 ASN 111 96 96 ASN ASN A . n A 1 112 LEU 112 97 97 LEU LEU A . n A 1 113 ARG 113 98 98 ARG ARG A . n A 1 114 GLU 114 99 99 GLU GLU A . n A 1 115 GLY 115 100 100 GLY GLY A . n A 1 116 ASN 116 101 101 ASN ASN A . n A 1 117 ILE 117 102 102 ILE ILE A . n A 1 118 MET 118 103 103 MET MET A . n A 1 119 ALA 119 104 104 ALA ALA A . n A 1 120 VAL 120 105 105 VAL VAL A . n A 1 121 MET 121 106 106 MET MET A . n A 1 122 ALA 122 107 107 ALA ALA A . n A 1 123 THR 123 108 108 THR THR A . n A 1 124 ALA 124 109 109 ALA ALA A . n A 1 125 MET 125 110 110 MET MET A . n A 1 126 TYR 126 111 111 TYR TYR A . n A 1 127 LEU 127 112 112 LEU LEU A . n A 1 128 GLN 128 113 113 GLN GLN A . n A 1 129 MET 129 114 114 MET MET A . n A 1 130 GLU 130 115 115 GLU GLU A . n A 1 131 HIS 131 116 116 HIS HIS A . n A 1 132 VAL 132 117 117 VAL VAL A . n A 1 133 VAL 133 118 118 VAL VAL A . n A 1 134 ASP 134 119 119 ASP ASP A . n A 1 135 THR 135 120 120 THR THR A . n A 1 136 CYS 136 121 121 CYS CYS A . n A 1 137 ARG 137 122 122 ARG ARG A . n A 1 138 LYS 138 123 123 LYS LYS A . n A 1 139 PHE 139 124 124 PHE PHE A . n A 1 140 ILE 140 125 125 ILE ILE A . n A 1 141 LYS 141 126 126 LYS LYS A . n A 1 142 ALA 142 127 127 ALA ALA A . n A 1 143 SER 143 128 128 SER SER A . n A 1 144 GLU 144 129 129 GLU GLU A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NQZ 1 201 200 NQZ 260 A . C 3 EDO 1 202 1 EDO EDO A . D 3 EDO 1 203 2 EDO EDO A . E 3 EDO 1 204 4 EDO EDO A . F 4 HOH 1 301 98 HOH HOH A . F 4 HOH 2 302 32 HOH HOH A . F 4 HOH 3 303 57 HOH HOH A . F 4 HOH 4 304 45 HOH HOH A . F 4 HOH 5 305 48 HOH HOH A . F 4 HOH 6 306 74 HOH HOH A . F 4 HOH 7 307 41 HOH HOH A . F 4 HOH 8 308 19 HOH HOH A . F 4 HOH 9 309 35 HOH HOH A . F 4 HOH 10 310 72 HOH HOH A . F 4 HOH 11 311 28 HOH HOH A . F 4 HOH 12 312 6 HOH HOH A . F 4 HOH 13 313 67 HOH HOH A . F 4 HOH 14 314 60 HOH HOH A . F 4 HOH 15 315 71 HOH HOH A . F 4 HOH 16 316 23 HOH HOH A . F 4 HOH 17 317 88 HOH HOH A . F 4 HOH 18 318 54 HOH HOH A . F 4 HOH 19 319 58 HOH HOH A . F 4 HOH 20 320 108 HOH HOH A . F 4 HOH 21 321 95 HOH HOH A . F 4 HOH 22 322 39 HOH HOH A . F 4 HOH 23 323 33 HOH HOH A . F 4 HOH 24 324 8 HOH HOH A . F 4 HOH 25 325 14 HOH HOH A . F 4 HOH 26 326 62 HOH HOH A . F 4 HOH 27 327 103 HOH HOH A . F 4 HOH 28 328 24 HOH HOH A . F 4 HOH 29 329 15 HOH HOH A . F 4 HOH 30 330 89 HOH HOH A . F 4 HOH 31 331 56 HOH HOH A . F 4 HOH 32 332 11 HOH HOH A . F 4 HOH 33 333 97 HOH HOH A . F 4 HOH 34 334 77 HOH HOH A . F 4 HOH 35 335 78 HOH HOH A . F 4 HOH 36 336 70 HOH HOH A . F 4 HOH 37 337 2 HOH HOH A . F 4 HOH 38 338 18 HOH HOH A . F 4 HOH 39 339 1 HOH HOH A . F 4 HOH 40 340 5 HOH HOH A . F 4 HOH 41 341 59 HOH HOH A . F 4 HOH 42 342 87 HOH HOH A . F 4 HOH 43 343 49 HOH HOH A . F 4 HOH 44 344 4 HOH HOH A . F 4 HOH 45 345 61 HOH HOH A . F 4 HOH 46 346 50 HOH HOH A . F 4 HOH 47 347 99 HOH HOH A . F 4 HOH 48 348 52 HOH HOH A . F 4 HOH 49 349 20 HOH HOH A . F 4 HOH 50 350 43 HOH HOH A . F 4 HOH 51 351 10 HOH HOH A . F 4 HOH 52 352 66 HOH HOH A . F 4 HOH 53 353 42 HOH HOH A . F 4 HOH 54 354 7 HOH HOH A . F 4 HOH 55 355 3 HOH HOH A . F 4 HOH 56 356 91 HOH HOH A . F 4 HOH 57 357 94 HOH HOH A . F 4 HOH 58 358 79 HOH HOH A . F 4 HOH 59 359 80 HOH HOH A . F 4 HOH 60 360 21 HOH HOH A . F 4 HOH 61 361 68 HOH HOH A . F 4 HOH 62 362 25 HOH HOH A . F 4 HOH 63 363 22 HOH HOH A . F 4 HOH 64 364 17 HOH HOH A . F 4 HOH 65 365 55 HOH HOH A . F 4 HOH 66 366 27 HOH HOH A . F 4 HOH 67 367 44 HOH HOH A . F 4 HOH 68 368 46 HOH HOH A . F 4 HOH 69 369 51 HOH HOH A . F 4 HOH 70 370 85 HOH HOH A . F 4 HOH 71 371 69 HOH HOH A . F 4 HOH 72 372 64 HOH HOH A . F 4 HOH 73 373 26 HOH HOH A . F 4 HOH 74 374 90 HOH HOH A . F 4 HOH 75 375 81 HOH HOH A . F 4 HOH 76 376 96 HOH HOH A . F 4 HOH 77 377 16 HOH HOH A . F 4 HOH 78 378 47 HOH HOH A . F 4 HOH 79 379 65 HOH HOH A . F 4 HOH 80 380 106 HOH HOH A . F 4 HOH 81 381 107 HOH HOH A . F 4 HOH 82 382 13 HOH HOH A . F 4 HOH 83 383 102 HOH HOH A . F 4 HOH 84 384 9 HOH HOH A . F 4 HOH 85 385 93 HOH HOH A . F 4 HOH 86 386 86 HOH HOH A . F 4 HOH 87 387 109 HOH HOH A . F 4 HOH 88 388 83 HOH HOH A . F 4 HOH 89 389 100 HOH HOH A . F 4 HOH 90 390 84 HOH HOH A . F 4 HOH 91 391 104 HOH HOH A . F 4 HOH 92 392 73 HOH HOH A . F 4 HOH 93 393 101 HOH HOH A . F 4 HOH 94 394 34 HOH HOH A . F 4 HOH 95 395 29 HOH HOH A . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LEU 0 ? CD1 ? A LEU 15 CD1 2 1 Y 1 A LEU 0 ? CD2 ? A LEU 15 CD2 3 1 Y 1 A ASP 6 ? OD2 ? A ASP 21 OD2 4 1 Y 1 A GLN 64 ? CD ? A GLN 79 CD 5 1 Y 1 A GLN 64 ? OE1 ? A GLN 79 OE1 6 1 Y 1 A GLN 64 ? NE2 ? A GLN 79 NE2 7 1 Y 1 A ARG 94 ? NH2 ? A ARG 109 NH2 8 1 Y 1 A ARG 98 ? NE ? A ARG 113 NE 9 1 Y 1 A ARG 98 ? CZ ? A ARG 113 CZ 10 1 Y 1 A ARG 98 ? NH1 ? A ARG 113 NH1 11 1 Y 1 A ARG 98 ? NH2 ? A ARG 113 NH2 12 1 Y 1 A GLU 115 ? CD ? A GLU 130 CD 13 1 Y 1 A GLU 115 ? OE1 ? A GLU 130 OE1 14 1 Y 1 A GLU 115 ? OE2 ? A GLU 130 OE2 15 1 Y 1 A LYS 123 ? NZ ? A LYS 138 NZ 16 1 Y 1 A LYS 126 ? CD ? A LYS 141 CD 17 1 Y 1 A LYS 126 ? CE ? A LYS 141 CE 18 1 Y 1 A LYS 126 ? NZ ? A LYS 141 NZ 19 1 Y 1 A GLU 129 ? O ? A GLU 144 O # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? Aimless ? ? ? 0.7.4 1 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 2 ? refinement ? ? ? ? ? ? ? ? ? ? ? BUSTER ? ? ? 2.10.3 3 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.24 4 ? 'data collection' ? ? ? ? ? ? ? ? ? ? ? DIALS ? ? ? . 5 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 120.000 _cell.angle_gamma_esd ? _cell.entry_id 6TOM _cell.details ? _cell.formula_units_Z ? _cell.length_a 67.279 _cell.length_a_esd ? _cell.length_b 67.279 _cell.length_b_esd ? _cell.length_c 166.379 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 12 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6TOM _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6TOM _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 3.29 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 62.66 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 291 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details ;1.5 microliter of BCL6-BTB at 10 mg/mL plus 1.5 microliter of a crystallisation solution consisting of 0.1 M Tris pH 7.5 and 0.80 M Na/K Tartrate, against 300 microliter of crystallisation solution. ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS 6M-F' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2019-07-15 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9159 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'DIAMOND BEAMLINE I04-1' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.9159 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline I04-1 _diffrn_source.pdbx_synchrotron_site Diamond # _reflns.B_iso_Wilson_estimate 41.910 _reflns.entry_id 6TOM _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.900 _reflns.d_resolution_low 47.720 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 18447 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 100.000 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 12.000 _reflns.pdbx_Rmerge_I_obs 0.098 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 11.400 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects 153 _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.103 _reflns.pdbx_Rpim_I_all 0.030 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all 221388 _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.998 _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.meanI_over_sigI_all _reflns_shell.meanI_over_sigI_obs _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.number_unique_obs _reflns_shell.percent_possible_all _reflns_shell.percent_possible_obs _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_gt _reflns_shell.meanI_over_uI_all _reflns_shell.meanI_over_uI_gt _reflns_shell.number_measured_gt _reflns_shell.number_unique_gt _reflns_shell.percent_possible_gt _reflns_shell.Rmerge_F_gt _reflns_shell.Rmerge_I_gt _reflns_shell.pdbx_redundancy _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_netI_over_sigmaI_all _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_rejects _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_CC_half _reflns_shell.pdbx_CC_star _reflns_shell.pdbx_R_split 1.900 1.940 ? ? 14715 ? ? ? 1159 100.000 ? ? ? ? 2.021 ? ? ? ? ? ? ? ? 12.700 ? ? ? 0.900 2.106 0.585 ? 1 1 0.558 ? ? 9.110 47.720 ? ? 2314 ? ? ? 232 99.400 ? ? ? ? 0.035 ? ? ? ? ? ? ? ? 10.000 ? ? ? 42.400 0.036 0.011 ? 2 1 0.999 ? ? # _refine.aniso_B[1][1] -1.1784 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][2] -1.1784 _refine.aniso_B[2][3] 0.0000 _refine.aniso_B[3][3] 2.3568 _refine.B_iso_max 141.370 _refine.B_iso_mean 49.9000 _refine.B_iso_min 24.960 _refine.correlation_coeff_Fo_to_Fc 0.9530 _refine.correlation_coeff_Fo_to_Fc_free 0.9560 _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 6TOM _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.9000 _refine.ls_d_res_low 18.4200 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 18347 _refine.ls_number_reflns_R_free 944 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 100.0000 _refine.ls_percent_reflns_R_free 5.1500 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1980 _refine.ls_R_factor_R_free 0.2180 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1970 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 3BIM _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI 0.1060 _refine.pdbx_overall_SU_R_free_Blow_DPI 0.1120 _refine.pdbx_overall_SU_R_Blow_DPI 0.1220 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML ? _refine.overall_SU_R_Cruickshank_DPI 0.1120 _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_analyze.entry_id 6TOM _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_coordinate_error_obs 0.260 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_sigma_a_free_details ? _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_sigma_a_obs_details ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.RG_d_res_high ? _refine_analyze.RG_d_res_low ? _refine_analyze.RG_free ? _refine_analyze.RG_work ? _refine_analyze.RG_free_work_ratio ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id final _refine_hist.details ? _refine_hist.d_res_high 1.9000 _refine_hist.d_res_low 18.4200 _refine_hist.number_atoms_solvent 102 _refine_hist.number_atoms_total 1179 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total 131 _refine_hist.pdbx_B_iso_mean_ligand 66.04 _refine_hist.pdbx_B_iso_mean_solvent 60.70 _refine_hist.pdbx_number_atoms_protein 1030 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 47 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? ? ? 409 ? t_dihedral_angle_d 2.000 SINUSOIDAL 'X-RAY DIFFRACTION' ? ? ? ? ? t_trig_c_planes ? ? 'X-RAY DIFFRACTION' ? ? ? 210 ? t_gen_planes 5.000 HARMONIC 'X-RAY DIFFRACTION' ? ? ? 1138 ? t_it 20.000 HARMONIC 'X-RAY DIFFRACTION' ? ? ? ? ? t_nbd ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? t_improper_torsion ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? t_pseud_angle ? ? 'X-RAY DIFFRACTION' ? ? ? 152 ? t_chiral_improper_torsion 5.000 SEMIHARMONIC 'X-RAY DIFFRACTION' ? ? ? 11 ? t_sum_occupancies 1.000 HARMONIC 'X-RAY DIFFRACTION' ? ? ? ? ? t_utility_distance ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? t_utility_angle ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? t_utility_torsion ? ? 'X-RAY DIFFRACTION' ? ? ? 1456 ? t_ideal_dist_contact 4.000 SEMIHARMONIC 'X-RAY DIFFRACTION' ? 0.010 ? 1138 ? t_bond_d 2.000 HARMONIC 'X-RAY DIFFRACTION' ? 1.000 ? 1542 ? t_angle_deg 2.000 HARMONIC 'X-RAY DIFFRACTION' ? 3.210 ? ? ? t_omega_torsion ? ? 'X-RAY DIFFRACTION' ? 14.980 ? ? ? t_other_torsion ? ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.d_res_high 1.9000 _refine_ls_shell.d_res_low 1.9100 _refine_ls_shell.number_reflns_all 391 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.number_reflns_R_free 21 _refine_ls_shell.number_reflns_R_work 370 _refine_ls_shell.percent_reflns_obs 99.7300 _refine_ls_shell.percent_reflns_R_free 5.3700 _refine_ls_shell.R_factor_all 0.1951 _refine_ls_shell.R_factor_obs ? _refine_ls_shell.R_factor_R_free 0.1787 _refine_ls_shell.R_factor_R_free_error 0.0000 _refine_ls_shell.R_factor_R_work 0.1961 _refine_ls_shell.redundancy_reflns_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.wR_factor_all ? _refine_ls_shell.wR_factor_obs ? _refine_ls_shell.wR_factor_R_free ? _refine_ls_shell.wR_factor_R_work ? _refine_ls_shell.pdbx_R_complete ? _refine_ls_shell.pdbx_total_number_of_bins_used 47 _refine_ls_shell.pdbx_phase_error ? _refine_ls_shell.pdbx_fsc_work ? _refine_ls_shell.pdbx_fsc_free ? # _struct.entry_id 6TOM _struct.title 'Crystal structure of human BCL6 BTB domain in complex with compound 1' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6TOM _struct_keywords.text 'Cancer, Lymphoma, Inhibitor, Degrader, TRANSCRIPTION' _struct_keywords.pdbx_keywords TRANSCRIPTION # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 3 ? F N N 4 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code BCL6_HUMAN _struct_ref.pdbx_db_accession P41182 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;ADSCIQFTRHASDVLLNLNRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKCNLSVINLDPEINPEGFC ILLDFMYTSRLNLREGNIMAVMATAMYLQMEHVVDTCRKFIKASE ; _struct_ref.pdbx_align_begin 5 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 6TOM _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 20 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 144 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P41182 _struct_ref_seq.db_align_beg 5 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 129 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 5 _struct_ref_seq.pdbx_auth_seq_align_end 129 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 6TOM GLY A 1 ? UNP P41182 ? ? 'expression tag' -14 1 1 6TOM PRO A 2 ? UNP P41182 ? ? 'expression tag' -13 2 1 6TOM GLY A 3 ? UNP P41182 ? ? 'expression tag' -12 3 1 6TOM LEU A 4 ? UNP P41182 ? ? 'expression tag' -11 4 1 6TOM ASP A 5 ? UNP P41182 ? ? 'expression tag' -10 5 1 6TOM TYR A 6 ? UNP P41182 ? ? 'expression tag' -9 6 1 6TOM LYS A 7 ? UNP P41182 ? ? 'expression tag' -8 7 1 6TOM ASP A 8 ? UNP P41182 ? ? 'expression tag' -7 8 1 6TOM ASP A 9 ? UNP P41182 ? ? 'expression tag' -6 9 1 6TOM ASP A 10 ? UNP P41182 ? ? 'expression tag' -5 10 1 6TOM ASP A 11 ? UNP P41182 ? ? 'expression tag' -4 11 1 6TOM LYS A 12 ? UNP P41182 ? ? 'expression tag' -3 12 1 6TOM GLU A 13 ? UNP P41182 ? ? 'expression tag' -2 13 1 6TOM ASN A 14 ? UNP P41182 ? ? 'expression tag' -1 14 1 6TOM LEU A 15 ? UNP P41182 ? ? 'expression tag' 0 15 1 6TOM TYR A 16 ? UNP P41182 ? ? 'expression tag' 1 16 1 6TOM PHE A 17 ? UNP P41182 ? ? 'expression tag' 2 17 1 6TOM GLN A 18 ? UNP P41182 ? ? 'expression tag' 3 18 1 6TOM GLY A 19 ? UNP P41182 ? ? 'expression tag' 4 19 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 5100 ? 1 MORE -24 ? 1 'SSA (A^2)' 13540 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'gel filtration' _pdbx_struct_assembly_auth_evidence.details ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 12_565 x,x-y+1,-z+1/6 0.5000000000 0.8660254038 0.0000000000 -33.6395000000 0.8660254038 -0.5000000000 0.0000000000 58.2653231412 0.0000000000 0.0000000000 -1.0000000000 27.7298333333 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 ARG A 28 ? ARG A 43 ? ARG A 13 ARG A 28 1 ? 16 HELX_P HELX_P2 AA2 HIS A 61 ? SER A 69 ? HIS A 46 SER A 54 1 ? 9 HELX_P HELX_P3 AA3 SER A 69 ? THR A 77 ? SER A 54 THR A 62 1 ? 9 HELX_P HELX_P4 AA4 LEU A 80 ? LEU A 84 ? LEU A 65 LEU A 69 5 ? 5 HELX_P HELX_P5 AA5 ASN A 94 ? SER A 108 ? ASN A 79 SER A 93 1 ? 15 HELX_P HELX_P6 AA6 ASN A 116 ? GLN A 128 ? ASN A 101 GLN A 113 1 ? 13 HELX_P HELX_P7 AA7 MET A 129 ? GLU A 144 ? MET A 114 GLU A 129 1 ? 16 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 2 ? AA2 ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA2 1 2 ? anti-parallel AA2 2 3 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 TYR A 16 ? GLN A 18 ? TYR A 1 GLN A 3 AA1 2 ILE A 24 ? PHE A 26 ? ILE A 9 PHE A 11 AA2 1 GLU A 56 ? ALA A 60 ? GLU A 41 ALA A 45 AA2 2 VAL A 49 ? VAL A 53 ? VAL A 34 VAL A 38 AA2 3 VAL A 86 ? ASN A 88 ? VAL A 71 ASN A 73 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N PHE A 17 ? N PHE A 2 O GLN A 25 ? O GLN A 10 AA2 1 2 O PHE A 58 ? O PHE A 43 N ILE A 51 ? N ILE A 36 AA2 2 3 N VAL A 52 ? N VAL A 37 O ILE A 87 ? O ILE A 72 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A NQZ 201 ? 14 'binding site for residue NQZ A 201' AC2 Software A EDO 202 ? 4 'binding site for residue EDO A 202' AC3 Software A EDO 203 ? 6 'binding site for residue EDO A 203' AC4 Software A EDO 204 ? 4 'binding site for residue EDO A 204' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 14 ASP A 32 ? ASP A 17 . ? 12_565 ? 2 AC1 14 LEU A 40 ? LEU A 25 . ? 12_565 ? 3 AC1 14 MET A 66 ? MET A 51 . ? 1_555 ? 4 AC1 14 ALA A 67 ? ALA A 52 . ? 1_555 ? 5 AC1 14 CYS A 68 ? CYS A 53 . ? 1_555 ? 6 AC1 14 GLY A 70 ? GLY A 55 . ? 1_555 ? 7 AC1 14 TYR A 73 ? TYR A 58 . ? 1_555 ? 8 AC1 14 GLN A 128 ? GLN A 113 . ? 1_555 ? 9 AC1 14 MET A 129 ? MET A 114 . ? 1_555 ? 10 AC1 14 GLU A 130 ? GLU A 115 . ? 1_555 ? 11 AC1 14 HOH F . ? HOH A 301 . ? 1_555 ? 12 AC1 14 HOH F . ? HOH A 315 . ? 1_555 ? 13 AC1 14 HOH F . ? HOH A 351 . ? 1_555 ? 14 AC1 14 HOH F . ? HOH A 356 . ? 1_555 ? 15 AC2 4 TYR A 16 ? TYR A 1 . ? 1_555 ? 16 AC2 4 GLN A 18 ? GLN A 3 . ? 1_555 ? 17 AC2 4 ASN A 88 ? ASN A 73 . ? 5_554 ? 18 AC2 4 HOH F . ? HOH A 317 . ? 5_554 ? 19 AC3 6 SER A 54 ? SER A 39 . ? 1_555 ? 20 AC3 6 ARG A 55 ? ARG A 40 . ? 11_455 ? 21 AC3 6 PRO A 91 ? PRO A 76 . ? 1_555 ? 22 AC3 6 GLU A 92 ? GLU A 77 . ? 1_555 ? 23 AC3 6 ILE A 93 ? ILE A 78 . ? 1_555 ? 24 AC3 6 ASN A 94 ? ASN A 79 . ? 1_555 ? 25 AC4 4 GLU A 130 ? GLU A 115 . ? 1_555 ? 26 AC4 4 VAL A 133 ? VAL A 118 . ? 1_555 ? 27 AC4 4 ASP A 134 ? ASP A 119 . ? 1_555 ? 28 AC4 4 HOH F . ? HOH A 306 . ? 1_555 ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 CYS A 8 ? B -48.40 150.51 2 1 LEU A 31 ? ? 58.94 18.98 3 1 SER A 39 ? ? 53.80 -129.58 4 1 SER A 93 ? ? 80.98 3.59 5 1 MET A 114 ? ? -116.14 76.86 # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[1][1]_esd _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][2]_esd _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[1][3]_esd _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[2][2]_esd _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.T[2][3]_esd _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[3][3]_esd _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[1][1]_esd _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][2]_esd _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[1][3]_esd _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[2][2]_esd _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.L[2][3]_esd _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[3][3]_esd _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][1]_esd _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][2]_esd _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[1][3]_esd _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][1]_esd _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][2]_esd _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][3]_esd _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][1]_esd _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][2]_esd _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[3][3]_esd 1 'X-RAY DIFFRACTION' ? refined -19.4685 30.1531 1.9681 -0.1184 ? -0.0614 ? -0.0053 ? 0.0275 ? 0.0985 ? 0.0257 ? 5.0234 ? 4.2995 ? -1.1423 ? 3.2979 ? -3.8424 ? 6.9340 ? -0.0256 ? 0.2941 ? 0.1033 ? -0.1838 ? 0.0315 ? -0.4694 ? -0.0791 ? 0.2721 ? -0.0059 ? 2 'X-RAY DIFFRACTION' ? refined -36.1506 25.2821 18.3297 0.0155 ? 0.0268 ? 0.0117 ? -0.0450 ? 0.0285 ? 0.0654 ? 4.9107 ? 1.5967 ? -0.7319 ? 2.2332 ? -1.0781 ? 3.8823 ? 0.2170 ? -0.2881 ? 0.3991 ? 0.3448 ? 0.0100 ? 0.3972 ? -0.3702 ? -0.1625 ? -0.2270 ? 3 'X-RAY DIFFRACTION' ? refined -39.5033 13.7627 29.8376 -0.0193 ? -0.0510 ? 0.0508 ? -0.0217 ? 0.0613 ? -0.0649 ? 3.8398 ? 0.8198 ? -3.8451 ? 1.7543 ? 1.1302 ? 0.0000 ? 0.0538 ? -0.5804 ? -0.0742 ? 0.4883 ? 0.0840 ? 0.2891 ? 0.1724 ? -0.2651 ? -0.1378 ? 4 'X-RAY DIFFRACTION' ? refined -31.8959 9.5547 18.8640 0.0268 ? -0.0173 ? -0.0226 ? -0.0949 ? 0.0172 ? 0.0344 ? 4.1410 ? 1.5876 ? -0.7311 ? 5.0924 ? -2.6120 ? 5.3260 ? -0.0789 ? 0.2171 ? -0.3522 ? -0.1444 ? 0.0400 ? 0.0036 ? 0.4882 ? 0.0134 ? 0.0389 ? 5 'X-RAY DIFFRACTION' ? refined -38.9915 1.6892 16.4818 0.2146 ? -0.0954 ? -0.1367 ? -0.0199 ? 0.0555 ? 0.0586 ? 1.0772 ? 0.1007 ? 1.8323 ? 2.2079 ? 2.5945 ? 0.7046 ? 0.0487 ? -0.0681 ? -0.1183 ? -0.1287 ? -0.0815 ? -0.0196 ? 0.1344 ? -0.3376 ? 0.0328 ? 6 'X-RAY DIFFRACTION' ? refined -32.3688 13.2831 29.5950 -0.0416 ? -0.0774 ? -0.0412 ? -0.1601 ? 0.0425 ? -0.1098 ? 2.8302 ? 0.7611 ? -0.7177 ? 3.2524 ? -0.7712 ? 2.7016 ? 0.2698 ? -0.2732 ? -0.0791 ? 0.6737 ? -0.1250 ? 0.0683 ? 0.0947 ? -0.0059 ? -0.1447 ? 7 'X-RAY DIFFRACTION' ? refined -21.8048 21.8628 33.3366 0.1156 ? -0.1422 ? -0.1156 ? -0.0269 ? 0.0402 ? 0.0256 ? 2.5224 ? -0.4917 ? 0.4640 ? -1.2204 ? 3.6285 ? 2.0997 ? 0.2409 ? -0.3677 ? 0.3523 ? 0.2795 ? -0.2005 ? -0.4085 ? -0.0401 ? -0.0875 ? -0.0403 ? 8 'X-RAY DIFFRACTION' ? refined -23.4234 10.0930 30.7709 -0.0689 ? -0.0416 ? -0.1170 ? -0.1862 ? 0.1079 ? -0.0557 ? 2.4390 ? 2.0854 ? -0.8377 ? 4.9809 ? -0.8090 ? 2.3769 ? 0.0837 ? -0.2634 ? -0.2559 ? 0.5822 ? -0.3810 ? -0.4617 ? 0.1345 ? 0.3228 ? 0.2973 ? 9 'X-RAY DIFFRACTION' ? refined -13.3844 14.4365 30.8167 0.0245 ? 0.0075 ? -0.0814 ? 0.0337 ? 0.1285 ? 0.2708 ? 10.0488 ? -0.9702 ? -1.6584 ? 6.4763 ? -2.3341 ? 0.0203 ? -0.0683 ? 0.2318 ? -0.1967 ? 0.0595 ? -0.0536 ? -0.4682 ? -0.0580 ? 0.0773 ? 0.1219 ? # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 1 'X-RAY DIFFRACTION' 1 ? ? A -1 ? ? A 13 ? '{A|-1 - 13}' 2 'X-RAY DIFFRACTION' 2 ? ? A 14 ? ? A 33 ? '{A|14 - 33}' 3 'X-RAY DIFFRACTION' 3 ? ? A 34 ? ? A 46 ? '{A|34 - 46}' 4 'X-RAY DIFFRACTION' 4 ? ? A 47 ? ? A 61 ? '{A|47 - 61}' 5 'X-RAY DIFFRACTION' 5 ? ? A 62 ? ? A 68 ? '{A|62 - 68}' 6 'X-RAY DIFFRACTION' 6 ? ? A 69 ? ? A 92 ? '{A|69 - 92}' 7 'X-RAY DIFFRACTION' 7 ? ? A 93 ? ? A 101 ? '{A|93 - 101}' 8 'X-RAY DIFFRACTION' 8 ? ? A 102 ? ? A 114 ? '{A|102 - 114}' 9 'X-RAY DIFFRACTION' 9 ? ? A 115 ? ? A 129 ? '{A|115 - 129}' # _phasing.method MR # _pdbx_entry_details.entry_id 6TOM _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY -14 ? A GLY 1 2 1 Y 1 A PRO -13 ? A PRO 2 3 1 Y 1 A GLY -12 ? A GLY 3 4 1 Y 1 A LEU -11 ? A LEU 4 5 1 Y 1 A ASP -10 ? A ASP 5 6 1 Y 1 A TYR -9 ? A TYR 6 7 1 Y 1 A LYS -8 ? A LYS 7 8 1 Y 1 A ASP -7 ? A ASP 8 9 1 Y 1 A ASP -6 ? A ASP 9 10 1 Y 1 A ASP -5 ? A ASP 10 11 1 Y 1 A ASP -4 ? A ASP 11 12 1 Y 1 A LYS -3 ? A LYS 12 13 1 Y 1 A GLU -2 ? A GLU 13 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 EDO C1 C N N 88 EDO O1 O N N 89 EDO C2 C N N 90 EDO O2 O N N 91 EDO H11 H N N 92 EDO H12 H N N 93 EDO HO1 H N N 94 EDO H21 H N N 95 EDO H22 H N N 96 EDO HO2 H N N 97 GLN N N N N 98 GLN CA C N S 99 GLN C C N N 100 GLN O O N N 101 GLN CB C N N 102 GLN CG C N N 103 GLN CD C N N 104 GLN OE1 O N N 105 GLN NE2 N N N 106 GLN OXT O N N 107 GLN H H N N 108 GLN H2 H N N 109 GLN HA H N N 110 GLN HB2 H N N 111 GLN HB3 H N N 112 GLN HG2 H N N 113 GLN HG3 H N N 114 GLN HE21 H N N 115 GLN HE22 H N N 116 GLN HXT H N N 117 GLU N N N N 118 GLU CA C N S 119 GLU C C N N 120 GLU O O N N 121 GLU CB C N N 122 GLU CG C N N 123 GLU CD C N N 124 GLU OE1 O N N 125 GLU OE2 O N N 126 GLU OXT O N N 127 GLU H H N N 128 GLU H2 H N N 129 GLU HA H N N 130 GLU HB2 H N N 131 GLU HB3 H N N 132 GLU HG2 H N N 133 GLU HG3 H N N 134 GLU HE2 H N N 135 GLU HXT H N N 136 GLY N N N N 137 GLY CA C N N 138 GLY C C N N 139 GLY O O N N 140 GLY OXT O N N 141 GLY H H N N 142 GLY H2 H N N 143 GLY HA2 H N N 144 GLY HA3 H N N 145 GLY HXT H N N 146 HIS N N N N 147 HIS CA C N S 148 HIS C C N N 149 HIS O O N N 150 HIS CB C N N 151 HIS CG C Y N 152 HIS ND1 N Y N 153 HIS CD2 C Y N 154 HIS CE1 C Y N 155 HIS NE2 N Y N 156 HIS OXT O N N 157 HIS H H N N 158 HIS H2 H N N 159 HIS HA H N N 160 HIS HB2 H N N 161 HIS HB3 H N N 162 HIS HD1 H N N 163 HIS HD2 H N N 164 HIS HE1 H N N 165 HIS HE2 H N N 166 HIS HXT H N N 167 HOH O O N N 168 HOH H1 H N N 169 HOH H2 H N N 170 ILE N N N N 171 ILE CA C N S 172 ILE C C N N 173 ILE O O N N 174 ILE CB C N S 175 ILE CG1 C N N 176 ILE CG2 C N N 177 ILE CD1 C N N 178 ILE OXT O N N 179 ILE H H N N 180 ILE H2 H N N 181 ILE HA H N N 182 ILE HB H N N 183 ILE HG12 H N N 184 ILE HG13 H N N 185 ILE HG21 H N N 186 ILE HG22 H N N 187 ILE HG23 H N N 188 ILE HD11 H N N 189 ILE HD12 H N N 190 ILE HD13 H N N 191 ILE HXT H N N 192 LEU N N N N 193 LEU CA C N S 194 LEU C C N N 195 LEU O O N N 196 LEU CB C N N 197 LEU CG C N N 198 LEU CD1 C N N 199 LEU CD2 C N N 200 LEU OXT O N N 201 LEU H H N N 202 LEU H2 H N N 203 LEU HA H N N 204 LEU HB2 H N N 205 LEU HB3 H N N 206 LEU HG H N N 207 LEU HD11 H N N 208 LEU HD12 H N N 209 LEU HD13 H N N 210 LEU HD21 H N N 211 LEU HD22 H N N 212 LEU HD23 H N N 213 LEU HXT H N N 214 LYS N N N N 215 LYS CA C N S 216 LYS C C N N 217 LYS O O N N 218 LYS CB C N N 219 LYS CG C N N 220 LYS CD C N N 221 LYS CE C N N 222 LYS NZ N N N 223 LYS OXT O N N 224 LYS H H N N 225 LYS H2 H N N 226 LYS HA H N N 227 LYS HB2 H N N 228 LYS HB3 H N N 229 LYS HG2 H N N 230 LYS HG3 H N N 231 LYS HD2 H N N 232 LYS HD3 H N N 233 LYS HE2 H N N 234 LYS HE3 H N N 235 LYS HZ1 H N N 236 LYS HZ2 H N N 237 LYS HZ3 H N N 238 LYS HXT H N N 239 MET N N N N 240 MET CA C N S 241 MET C C N N 242 MET O O N N 243 MET CB C N N 244 MET CG C N N 245 MET SD S N N 246 MET CE C N N 247 MET OXT O N N 248 MET H H N N 249 MET H2 H N N 250 MET HA H N N 251 MET HB2 H N N 252 MET HB3 H N N 253 MET HG2 H N N 254 MET HG3 H N N 255 MET HE1 H N N 256 MET HE2 H N N 257 MET HE3 H N N 258 MET HXT H N N 259 NQZ CL CL N N 260 NQZ C22 C Y N 261 NQZ C23 C Y N 262 NQZ N5 N Y N 263 NQZ C7 C Y N 264 NQZ N N N N 265 NQZ C2 C N N 266 NQZ C3 C N N 267 NQZ C4 C N R 268 NQZ C5 C N N 269 NQZ C6 C N N 270 NQZ F F N N 271 NQZ F1 F N N 272 NQZ C1 C N S 273 NQZ C C N N 274 NQZ C8 C Y N 275 NQZ N1 N Y N 276 NQZ N2 N N N 277 NQZ C9 C Y N 278 NQZ C14 C Y N 279 NQZ C13 C Y N 280 NQZ C12 C Y N 281 NQZ N3 N N N 282 NQZ C15 C N N 283 NQZ C16 C N N 284 NQZ O O N N 285 NQZ N4 N N N 286 NQZ C11 C Y N 287 NQZ C10 C Y N 288 NQZ C17 C N N 289 NQZ C18 C N N 290 NQZ C19 C N N 291 NQZ O1 O N N 292 NQZ C21 C N N 293 NQZ C20 C N N 294 NQZ H1 H N N 295 NQZ H2 H N N 296 NQZ H3 H N N 297 NQZ H4 H N N 298 NQZ H5 H N N 299 NQZ H6 H N N 300 NQZ H7 H N N 301 NQZ H8 H N N 302 NQZ H9 H N N 303 NQZ H10 H N N 304 NQZ H11 H N N 305 NQZ H12 H N N 306 NQZ H13 H N N 307 NQZ H14 H N N 308 NQZ H15 H N N 309 NQZ H16 H N N 310 NQZ H17 H N N 311 NQZ H18 H N N 312 NQZ H19 H N N 313 NQZ H20 H N N 314 NQZ H21 H N N 315 NQZ H22 H N N 316 NQZ H23 H N N 317 NQZ H24 H N N 318 NQZ H25 H N N 319 NQZ H26 H N N 320 NQZ H27 H N N 321 NQZ H28 H N N 322 NQZ H29 H N N 323 NQZ H30 H N N 324 NQZ H31 H N N 325 PHE N N N N 326 PHE CA C N S 327 PHE C C N N 328 PHE O O N N 329 PHE CB C N N 330 PHE CG C Y N 331 PHE CD1 C Y N 332 PHE CD2 C Y N 333 PHE CE1 C Y N 334 PHE CE2 C Y N 335 PHE CZ C Y N 336 PHE OXT O N N 337 PHE H H N N 338 PHE H2 H N N 339 PHE HA H N N 340 PHE HB2 H N N 341 PHE HB3 H N N 342 PHE HD1 H N N 343 PHE HD2 H N N 344 PHE HE1 H N N 345 PHE HE2 H N N 346 PHE HZ H N N 347 PHE HXT H N N 348 PRO N N N N 349 PRO CA C N S 350 PRO C C N N 351 PRO O O N N 352 PRO CB C N N 353 PRO CG C N N 354 PRO CD C N N 355 PRO OXT O N N 356 PRO H H N N 357 PRO HA H N N 358 PRO HB2 H N N 359 PRO HB3 H N N 360 PRO HG2 H N N 361 PRO HG3 H N N 362 PRO HD2 H N N 363 PRO HD3 H N N 364 PRO HXT H N N 365 SER N N N N 366 SER CA C N S 367 SER C C N N 368 SER O O N N 369 SER CB C N N 370 SER OG O N N 371 SER OXT O N N 372 SER H H N N 373 SER H2 H N N 374 SER HA H N N 375 SER HB2 H N N 376 SER HB3 H N N 377 SER HG H N N 378 SER HXT H N N 379 THR N N N N 380 THR CA C N S 381 THR C C N N 382 THR O O N N 383 THR CB C N R 384 THR OG1 O N N 385 THR CG2 C N N 386 THR OXT O N N 387 THR H H N N 388 THR H2 H N N 389 THR HA H N N 390 THR HB H N N 391 THR HG1 H N N 392 THR HG21 H N N 393 THR HG22 H N N 394 THR HG23 H N N 395 THR HXT H N N 396 TYR N N N N 397 TYR CA C N S 398 TYR C C N N 399 TYR O O N N 400 TYR CB C N N 401 TYR CG C Y N 402 TYR CD1 C Y N 403 TYR CD2 C Y N 404 TYR CE1 C Y N 405 TYR CE2 C Y N 406 TYR CZ C Y N 407 TYR OH O N N 408 TYR OXT O N N 409 TYR H H N N 410 TYR H2 H N N 411 TYR HA H N N 412 TYR HB2 H N N 413 TYR HB3 H N N 414 TYR HD1 H N N 415 TYR HD2 H N N 416 TYR HE1 H N N 417 TYR HE2 H N N 418 TYR HH H N N 419 TYR HXT H N N 420 VAL N N N N 421 VAL CA C N S 422 VAL C C N N 423 VAL O O N N 424 VAL CB C N N 425 VAL CG1 C N N 426 VAL CG2 C N N 427 VAL OXT O N N 428 VAL H H N N 429 VAL H2 H N N 430 VAL HA H N N 431 VAL HB H N N 432 VAL HG11 H N N 433 VAL HG12 H N N 434 VAL HG13 H N N 435 VAL HG21 H N N 436 VAL HG22 H N N 437 VAL HG23 H N N 438 VAL HXT H N N 439 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 EDO C1 O1 sing N N 83 EDO C1 C2 sing N N 84 EDO C1 H11 sing N N 85 EDO C1 H12 sing N N 86 EDO O1 HO1 sing N N 87 EDO C2 O2 sing N N 88 EDO C2 H21 sing N N 89 EDO C2 H22 sing N N 90 EDO O2 HO2 sing N N 91 GLN N CA sing N N 92 GLN N H sing N N 93 GLN N H2 sing N N 94 GLN CA C sing N N 95 GLN CA CB sing N N 96 GLN CA HA sing N N 97 GLN C O doub N N 98 GLN C OXT sing N N 99 GLN CB CG sing N N 100 GLN CB HB2 sing N N 101 GLN CB HB3 sing N N 102 GLN CG CD sing N N 103 GLN CG HG2 sing N N 104 GLN CG HG3 sing N N 105 GLN CD OE1 doub N N 106 GLN CD NE2 sing N N 107 GLN NE2 HE21 sing N N 108 GLN NE2 HE22 sing N N 109 GLN OXT HXT sing N N 110 GLU N CA sing N N 111 GLU N H sing N N 112 GLU N H2 sing N N 113 GLU CA C sing N N 114 GLU CA CB sing N N 115 GLU CA HA sing N N 116 GLU C O doub N N 117 GLU C OXT sing N N 118 GLU CB CG sing N N 119 GLU CB HB2 sing N N 120 GLU CB HB3 sing N N 121 GLU CG CD sing N N 122 GLU CG HG2 sing N N 123 GLU CG HG3 sing N N 124 GLU CD OE1 doub N N 125 GLU CD OE2 sing N N 126 GLU OE2 HE2 sing N N 127 GLU OXT HXT sing N N 128 GLY N CA sing N N 129 GLY N H sing N N 130 GLY N H2 sing N N 131 GLY CA C sing N N 132 GLY CA HA2 sing N N 133 GLY CA HA3 sing N N 134 GLY C O doub N N 135 GLY C OXT sing N N 136 GLY OXT HXT sing N N 137 HIS N CA sing N N 138 HIS N H sing N N 139 HIS N H2 sing N N 140 HIS CA C sing N N 141 HIS CA CB sing N N 142 HIS CA HA sing N N 143 HIS C O doub N N 144 HIS C OXT sing N N 145 HIS CB CG sing N N 146 HIS CB HB2 sing N N 147 HIS CB HB3 sing N N 148 HIS CG ND1 sing Y N 149 HIS CG CD2 doub Y N 150 HIS ND1 CE1 doub Y N 151 HIS ND1 HD1 sing N N 152 HIS CD2 NE2 sing Y N 153 HIS CD2 HD2 sing N N 154 HIS CE1 NE2 sing Y N 155 HIS CE1 HE1 sing N N 156 HIS NE2 HE2 sing N N 157 HIS OXT HXT sing N N 158 HOH O H1 sing N N 159 HOH O H2 sing N N 160 ILE N CA sing N N 161 ILE N H sing N N 162 ILE N H2 sing N N 163 ILE CA C sing N N 164 ILE CA CB sing N N 165 ILE CA HA sing N N 166 ILE C O doub N N 167 ILE C OXT sing N N 168 ILE CB CG1 sing N N 169 ILE CB CG2 sing N N 170 ILE CB HB sing N N 171 ILE CG1 CD1 sing N N 172 ILE CG1 HG12 sing N N 173 ILE CG1 HG13 sing N N 174 ILE CG2 HG21 sing N N 175 ILE CG2 HG22 sing N N 176 ILE CG2 HG23 sing N N 177 ILE CD1 HD11 sing N N 178 ILE CD1 HD12 sing N N 179 ILE CD1 HD13 sing N N 180 ILE OXT HXT sing N N 181 LEU N CA sing N N 182 LEU N H sing N N 183 LEU N H2 sing N N 184 LEU CA C sing N N 185 LEU CA CB sing N N 186 LEU CA HA sing N N 187 LEU C O doub N N 188 LEU C OXT sing N N 189 LEU CB CG sing N N 190 LEU CB HB2 sing N N 191 LEU CB HB3 sing N N 192 LEU CG CD1 sing N N 193 LEU CG CD2 sing N N 194 LEU CG HG sing N N 195 LEU CD1 HD11 sing N N 196 LEU CD1 HD12 sing N N 197 LEU CD1 HD13 sing N N 198 LEU CD2 HD21 sing N N 199 LEU CD2 HD22 sing N N 200 LEU CD2 HD23 sing N N 201 LEU OXT HXT sing N N 202 LYS N CA sing N N 203 LYS N H sing N N 204 LYS N H2 sing N N 205 LYS CA C sing N N 206 LYS CA CB sing N N 207 LYS CA HA sing N N 208 LYS C O doub N N 209 LYS C OXT sing N N 210 LYS CB CG sing N N 211 LYS CB HB2 sing N N 212 LYS CB HB3 sing N N 213 LYS CG CD sing N N 214 LYS CG HG2 sing N N 215 LYS CG HG3 sing N N 216 LYS CD CE sing N N 217 LYS CD HD2 sing N N 218 LYS CD HD3 sing N N 219 LYS CE NZ sing N N 220 LYS CE HE2 sing N N 221 LYS CE HE3 sing N N 222 LYS NZ HZ1 sing N N 223 LYS NZ HZ2 sing N N 224 LYS NZ HZ3 sing N N 225 LYS OXT HXT sing N N 226 MET N CA sing N N 227 MET N H sing N N 228 MET N H2 sing N N 229 MET CA C sing N N 230 MET CA CB sing N N 231 MET CA HA sing N N 232 MET C O doub N N 233 MET C OXT sing N N 234 MET CB CG sing N N 235 MET CB HB2 sing N N 236 MET CB HB3 sing N N 237 MET CG SD sing N N 238 MET CG HG2 sing N N 239 MET CG HG3 sing N N 240 MET SD CE sing N N 241 MET CE HE1 sing N N 242 MET CE HE2 sing N N 243 MET CE HE3 sing N N 244 MET OXT HXT sing N N 245 NQZ C5 C4 sing N N 246 NQZ C3 C4 sing N N 247 NQZ C3 N sing N N 248 NQZ C4 C6 sing N N 249 NQZ N5 C23 doub Y N 250 NQZ N5 C7 sing Y N 251 NQZ F C6 sing N N 252 NQZ C23 C22 sing Y N 253 NQZ C6 F1 sing N N 254 NQZ C6 C1 sing N N 255 NQZ N C7 sing N N 256 NQZ N C2 sing N N 257 NQZ C7 N1 doub Y N 258 NQZ C2 C1 sing N N 259 NQZ C22 CL sing N N 260 NQZ C22 C8 doub Y N 261 NQZ C1 C sing N N 262 NQZ N1 C8 sing Y N 263 NQZ C8 N2 sing N N 264 NQZ N2 C9 sing N N 265 NQZ C9 C14 doub Y N 266 NQZ C9 C10 sing Y N 267 NQZ C14 C13 sing Y N 268 NQZ C21 C19 sing N N 269 NQZ C10 C11 doub Y N 270 NQZ C20 C19 sing N N 271 NQZ C13 C12 doub Y N 272 NQZ C19 C18 sing N N 273 NQZ C19 O1 sing N N 274 NQZ C18 C17 sing N N 275 NQZ C11 C12 sing Y N 276 NQZ C11 N4 sing N N 277 NQZ C12 N3 sing N N 278 NQZ N4 C17 sing N N 279 NQZ N4 C16 sing N N 280 NQZ N3 C16 sing N N 281 NQZ N3 C15 sing N N 282 NQZ C16 O doub N N 283 NQZ C23 H1 sing N N 284 NQZ C2 H2 sing N N 285 NQZ C2 H3 sing N N 286 NQZ C3 H4 sing N N 287 NQZ C3 H5 sing N N 288 NQZ C4 H6 sing N N 289 NQZ C5 H7 sing N N 290 NQZ C5 H8 sing N N 291 NQZ C5 H9 sing N N 292 NQZ C1 H10 sing N N 293 NQZ C H11 sing N N 294 NQZ C H12 sing N N 295 NQZ C H13 sing N N 296 NQZ N2 H14 sing N N 297 NQZ C14 H15 sing N N 298 NQZ C13 H16 sing N N 299 NQZ C15 H17 sing N N 300 NQZ C15 H18 sing N N 301 NQZ C15 H19 sing N N 302 NQZ C10 H20 sing N N 303 NQZ C17 H21 sing N N 304 NQZ C17 H22 sing N N 305 NQZ C18 H23 sing N N 306 NQZ C18 H24 sing N N 307 NQZ O1 H25 sing N N 308 NQZ C21 H26 sing N N 309 NQZ C21 H27 sing N N 310 NQZ C21 H28 sing N N 311 NQZ C20 H29 sing N N 312 NQZ C20 H30 sing N N 313 NQZ C20 H31 sing N N 314 PHE N CA sing N N 315 PHE N H sing N N 316 PHE N H2 sing N N 317 PHE CA C sing N N 318 PHE CA CB sing N N 319 PHE CA HA sing N N 320 PHE C O doub N N 321 PHE C OXT sing N N 322 PHE CB CG sing N N 323 PHE CB HB2 sing N N 324 PHE CB HB3 sing N N 325 PHE CG CD1 doub Y N 326 PHE CG CD2 sing Y N 327 PHE CD1 CE1 sing Y N 328 PHE CD1 HD1 sing N N 329 PHE CD2 CE2 doub Y N 330 PHE CD2 HD2 sing N N 331 PHE CE1 CZ doub Y N 332 PHE CE1 HE1 sing N N 333 PHE CE2 CZ sing Y N 334 PHE CE2 HE2 sing N N 335 PHE CZ HZ sing N N 336 PHE OXT HXT sing N N 337 PRO N CA sing N N 338 PRO N CD sing N N 339 PRO N H sing N N 340 PRO CA C sing N N 341 PRO CA CB sing N N 342 PRO CA HA sing N N 343 PRO C O doub N N 344 PRO C OXT sing N N 345 PRO CB CG sing N N 346 PRO CB HB2 sing N N 347 PRO CB HB3 sing N N 348 PRO CG CD sing N N 349 PRO CG HG2 sing N N 350 PRO CG HG3 sing N N 351 PRO CD HD2 sing N N 352 PRO CD HD3 sing N N 353 PRO OXT HXT sing N N 354 SER N CA sing N N 355 SER N H sing N N 356 SER N H2 sing N N 357 SER CA C sing N N 358 SER CA CB sing N N 359 SER CA HA sing N N 360 SER C O doub N N 361 SER C OXT sing N N 362 SER CB OG sing N N 363 SER CB HB2 sing N N 364 SER CB HB3 sing N N 365 SER OG HG sing N N 366 SER OXT HXT sing N N 367 THR N CA sing N N 368 THR N H sing N N 369 THR N H2 sing N N 370 THR CA C sing N N 371 THR CA CB sing N N 372 THR CA HA sing N N 373 THR C O doub N N 374 THR C OXT sing N N 375 THR CB OG1 sing N N 376 THR CB CG2 sing N N 377 THR CB HB sing N N 378 THR OG1 HG1 sing N N 379 THR CG2 HG21 sing N N 380 THR CG2 HG22 sing N N 381 THR CG2 HG23 sing N N 382 THR OXT HXT sing N N 383 TYR N CA sing N N 384 TYR N H sing N N 385 TYR N H2 sing N N 386 TYR CA C sing N N 387 TYR CA CB sing N N 388 TYR CA HA sing N N 389 TYR C O doub N N 390 TYR C OXT sing N N 391 TYR CB CG sing N N 392 TYR CB HB2 sing N N 393 TYR CB HB3 sing N N 394 TYR CG CD1 doub Y N 395 TYR CG CD2 sing Y N 396 TYR CD1 CE1 sing Y N 397 TYR CD1 HD1 sing N N 398 TYR CD2 CE2 doub Y N 399 TYR CD2 HD2 sing N N 400 TYR CE1 CZ doub Y N 401 TYR CE1 HE1 sing N N 402 TYR CE2 CZ sing Y N 403 TYR CE2 HE2 sing N N 404 TYR CZ OH sing N N 405 TYR OH HH sing N N 406 TYR OXT HXT sing N N 407 VAL N CA sing N N 408 VAL N H sing N N 409 VAL N H2 sing N N 410 VAL CA C sing N N 411 VAL CA CB sing N N 412 VAL CA HA sing N N 413 VAL C O doub N N 414 VAL C OXT sing N N 415 VAL CB CG1 sing N N 416 VAL CB CG2 sing N N 417 VAL CB HB sing N N 418 VAL CG1 HG11 sing N N 419 VAL CG1 HG12 sing N N 420 VAL CG1 HG13 sing N N 421 VAL CG2 HG21 sing N N 422 VAL CG2 HG22 sing N N 423 VAL CG2 HG23 sing N N 424 VAL OXT HXT sing N N 425 # _pdbx_audit_support.funding_organization 'Cancer Research UK' _pdbx_audit_support.country 'United Kingdom' _pdbx_audit_support.grant_number C309/A11566 _pdbx_audit_support.ordinal 1 # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id NQZ _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id NQZ _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 3BIM _pdbx_initial_refinement_model.details ? # _atom_sites.entry_id 6TOM _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.014863 _atom_sites.fract_transf_matrix[1][2] 0.008581 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.017163 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.006010 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C CL F N O S # loop_